Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

87661124 .. 87663819

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTCGTCAAACTTGAGAGGAAAAAGAGAGAGACTTCAATGACTTCTCATTCCCAAGAGAGTCTCTATCTGCAAATGTCACAACAAAGAGAGTCAAAGGAGGAGGAGGGGGAAGAAAATGAAGCTCAAGATCAACCAGAAGTTGCCTATGGAGCAAGCAGAGTGGAATCTAAACAACCAAGCATGAACAATGAAAGATATGGAAGGATCGTGAAGGTTCAAGGAGGCCACGTTATTAGATCACTTGCGAGAAAAGACAGGCACAGCAAGATCTACACGTCCAAGGGCCCAAGAGACAGAAGGTTCCGGCTTTCAGCTCAAACTGCCATAGAGTTCTATGATGTTCAAGACCGTCTTGGCTTTGATAGACCAAGCAAGGCCATTGACTGGCTCATTCACAAGGCCAAGGCCTCCATTGAAGCTCTCGAAGATTCTTCTACTACACACCATCCTCAGCATCACCAAGGAGGCAATGCCGAGCCAGAAATTGTCAAAACTCATCAGCCTTTGGACGAGGGCACTATGAAAAATGAGAGCAAAGAACCTGTTCTTGACTATGCTGAAGAAGCCCTCAATTGTGCTCCCAATTTATCAGAGGCCAATTTCATGGAGATGGGTTGGTTTCAAAGTCTGATGGCTTGGAATTACAATGCAGGTGATAGTGGAGAAGGTTGTTCTTTCAATTCATCATCTGTTACTCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

235

Amino Acids

26.74

Weight (kDa)

5.76

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	83 - 160	6.6e-31	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	644
AccB7I	CCANNNNNTGG	1 cut(s)	387
AclWI	GGATC	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	582
AfiI	CCNNNNNNNGG	1 cut(s)	387
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	6 cut(s)	39, 221, 347, 419, 626, 682
AjiI	CACGTC	1 cut(s)	279
AluBI	AGCT	3 cut(s)	125, 317, 422
AluI	AGCT	3 cut(s)	125, 317, 422
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	3 cut(s)	26, 68, 288
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	6 cut(s)	226, 286, 378, 402, 408, 597
ApaI	GGGCCC	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	546
AspS9I	GGNCC	2 cut(s)	286, 287
AsuHPI	GGTGA	2 cut(s)	452, 668
BaeGI	GKGCMC	2 cut(s)	290, 521
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	583
BbvCI	CCTCAGC	1 cut(s)	453
BccI	CCATC	3 cut(s)	456, 607, 628
BcoDI	GTCTC	3 cut(s)	26, 68, 288
BfmI	CTRYAG	1 cut(s)	704
BfuAI	ACCTGC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	270
BmgBI	CACGTC	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	286, 287
BmiI	GGNNCC	2 cut(s)	288, 305
BmsI	GCATC	1 cut(s)	466
Bpu10I	CCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	35, 111
BsaJI	CCNNGG	3 cut(s)	282, 405, 463
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	478
BseDI	CCNNGG	3 cut(s)	282, 405, 463
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	2 cut(s)	116, 119
BseSI	GKGCMC	2 cut(s)	290, 521
BshFI	GGCC	6 cut(s)	228, 288, 380, 404, 410, 599
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	3 cut(s)	26, 68, 288
BsnI	GGCC	6 cut(s)	228, 288, 380, 404, 410, 599
Bsp120I	GGGCCC	1 cut(s)	286
Bsp1286I	GDGCHC	3 cut(s)	290, 521, 583
Bsp143I	GATC	4 cut(s)	130, 207, 239, 270
BspANI	GGCC	6 cut(s)	228, 288, 380, 404, 410, 599
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	288, 305
BspMI	ACCTGC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	282, 405, 463
BssMI	GATC	4 cut(s)	130, 207, 239, 270
BssT1I	CCWWGG	3 cut(s)	282, 405, 463
Bst4CI	ACNGT	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	4 cut(s)	133, 210, 242, 273
BstMAI	GTCTC	3 cut(s)	26, 68, 288
BstMBI	GATC	4 cut(s)	130, 207, 239, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 323, 566
BstSFI	CTRYAG	1 cut(s)	704
BstSLI	GKGCMC	2 cut(s)	290, 521
BstX2I	RGATCY	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	6 cut(s)	228, 288, 380, 404, 410, 599
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	448
BveI	ACCTGC	1 cut(s)	644
Cac8I	GCNNGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	286, 287
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviAII	CATG	2 cut(s)	184, 607
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	4 cut(s)	132, 209, 241, 272
DpnII	GATC	4 cut(s)	130, 207, 239, 270
Eco130I	CCWWGG	3 cut(s)	282, 405, 463
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	286
EcoT14I	CCWWGG	3 cut(s)	282, 405, 463
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	3 cut(s)	282, 405, 463
FaeI	CATG	2 cut(s)	187, 610
FaiI	YATR	9 cut(s)	150, 185, 201, 329, 339, 524, 558, 608, 706
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FatI	CATG	2 cut(s)	183, 606
FokI	GGATG	1 cut(s)	435
FriOI	GRGCYC	1 cut(s)	290
HaeIII	GGCC	6 cut(s)	228, 288, 380, 404, 410, 599
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	2 cut(s)	187, 610
HinfI	GANTC	4 cut(s)	61, 92, 167, 431
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	452, 668
Hpy188I	TCNGA	2 cut(s)	595, 633
Hpy188III	TCNNGA	5 cut(s)	128, 211, 347, 425, 551
HpyAV	CCTTC	4 cut(s)	198, 208, 294, 662
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	2 cut(s)	231, 278
HpyCH4V	TGCA	2 cut(s)	73, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 323, 566
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	2 cut(s)	231, 278
Hsp92II	CATG	2 cut(s)	187, 610
Kzo9I	GATC	4 cut(s)	130, 207, 239, 270
LmnI	GCTCC	2 cut(s)	152, 586
LpnPI	CCDG	7 cut(s)	150, 244, 320, 373, 495, 558, 639
LweI	GCATC	1 cut(s)	466
MaeII	ACGT	2 cut(s)	231, 278
MaeIII	GTNAC	2 cut(s)	78, 694
MalI	GATC	4 cut(s)	132, 209, 241, 272
MboI	GATC	4 cut(s)	130, 207, 239, 270
MboII	GAAGA	4 cut(s)	125, 426, 440, 575
MfeI	CAATTG	1 cut(s)	574
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	3 cut(s)	290, 521, 583
MluCI	AATT	6 cut(s)	486, 574, 586, 601, 643, 682
MlyI	GAGTC	2 cut(s)	70, 101
MroXI	GAANNNNTTC	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	1 cut(s)	307
MunI	CAATTG	1 cut(s)	574
MwoI	GCNNNNNNNGC	3 cut(s)	152, 323, 566
NdeII	GATC	4 cut(s)	130, 207, 239, 270
NlaIII	CATG	2 cut(s)	187, 610
NlaIV	GGNNCC	2 cut(s)	288, 305
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	78
PaqCI	CACCTGC	1 cut(s)	644
PceI	AGGCCT	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	167, 431
PflMI	CCANNNNNTGG	1 cut(s)	387
PleI	GAGTC	2 cut(s)	69, 100
PpsI	GAGTC	2 cut(s)	69, 100
PspN4I	GGNNCC	2 cut(s)	288, 305
PspOMI	GGGCCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	286, 287
PsuI	RGATCY	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	611
Sau3AI	GATC	4 cut(s)	130, 207, 239, 270
Sau96I	GGNCC	2 cut(s)	286, 287
SchI	GAGTC	2 cut(s)	70, 101
SduI	GDGCHC	3 cut(s)	290, 521, 583
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	14, 126
SmoI	CTYRAG	2 cut(s)	14, 126
Sse9I	AATT	6 cut(s)	486, 574, 586, 601, 643, 682
SseBI	AGGCCT	1 cut(s)	410
StuI	AGGCCT	1 cut(s)	410
StyI	CCWWGG	3 cut(s)	282, 405, 463
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	2 cut(s)	234, 281
TaqI	TCGA	1 cut(s)	426
TasI	AATT	6 cut(s)	486, 574, 586, 601, 643, 682
TfiI	GAWTC	2 cut(s)	167, 431
TseFI	GTSAC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	6 cut(s)	135, 200, 207, 539, 595, 675
Van91I	CCANNNNNTGG	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.