Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004250.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

200287 .. 201840

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004250.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgcctagtgtgcaggctagcttagttgaggtcgggggactacttcttcctccacctccagtgaaatcgtggaggcttaaggccacattccaagggccaccggccggaaggaccactacaccaaggtctgcaccgccaaaggccccagggaccaccgcgtccggctcgcaggtgcacatcaccattcaattctacgacgtgcaagactggctcggatacgaccggcccagcaaggcggttgattggctcatcaagaaagccaaggccgcaaccgacaagctcgacgtgccgtggaaccagaactcaatttctgttcagacaacatcttctccgatggtgccgatatccgcagcgcaggccctccatttctcgatggtggaggctccgagttctttgtttgctaatatgcgaggagcaatggtgggtaccagcagagtggcagagctggtgaatcaaaacagctcgaattttctgcaggtgaggatggtgtggaggccgaagttgttaatctttgtctgccttcaattgcctctgatcgaagttggactaaaggccaaagttgtcggcttgaccgatgaagttgtaggtgaggatggtgtggaggtggtgttacatgtcgagaacgacggagaggatggcggggtaggattggagctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

219

Amino Acids

23.51

Weight (kDa)

6.3

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	160, 466
AasI	GACNNNNNNGTC	1 cut(s)	157
Acc36I	ACCTGC	2 cut(s)	160, 466
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	2 cut(s)	337, 425
AccII	CGCG	1 cut(s)	158
AciI	CCGC	6 cut(s)	134, 156, 236, 267, 348, 639
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	466
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflII	CTTAAG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	2 cut(s)	188, 524
AjiI	CACGTC	2 cut(s)	199, 286
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	5 cut(s)	21, 280, 445, 462, 655
AluI	AGCT	5 cut(s)	21, 280, 445, 462, 655
Alw21I	GWGCWC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	173
AoxI	GGCC	9 cut(s)	81, 95, 102, 141, 224, 264, 357, 494, 552
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	466
Asp718I	GGTACC	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	6 cut(s)	95, 111, 142, 150, 225, 358
AsuHPI	GGTGA	4 cut(s)	172, 460, 490, 599
AsuNHI	GCTAGC	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	111, 150
BaeGI	GKGCMC	1 cut(s)	177
BanI	GGYRCC	2 cut(s)	337, 425
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	5 cut(s)	328, 367, 478, 587, 629
BceAI	ACGGC	1 cut(s)	274
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	6, 18
BfmI	CTRYAG	1 cut(s)	473
BfrI	CTTAAG	1 cut(s)	77
BfuAI	ACCTGC	2 cut(s)	160, 466
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	267, 351
BlsI	GCNGC	2 cut(s)	268, 352
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	2 cut(s)	111, 150
BmgBI	CACGTC	2 cut(s)	199, 286
BmgT120I	GGNCC	6 cut(s)	95, 111, 142, 150, 225, 358
BmiI	GGNNCC	6 cut(s)	144, 151, 296, 339, 384, 427
BmrFI	CCNGG	1 cut(s)	147
BmtI	GCTAGC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	42
BsaJI	CCNNGG	6 cut(s)	91, 122, 145, 146, 261, 290
BsaXI	ACNNNNNCTCC	6 cut(s)	313, 343, 405, 435, 593, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	2 cut(s)	100, 222
Bse1I	ACTGG	2 cut(s)	59, 212
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	6 cut(s)	91, 122, 145, 146, 261, 290
BseGI	GGATG	3 cut(s)	489, 598, 640
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	59, 212
BseRI	GAGGAG	1 cut(s)	426
BseSI	GKGCMC	1 cut(s)	177
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	227
BsgI	GTGCAG	2 cut(s)	32, 114
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	2 cut(s)	105, 223
BshFI	GGCC	9 cut(s)	83, 97, 104, 143, 226, 266, 359, 496, 554
BshNI	GGYRCC	2 cut(s)	337, 425
BsiEI	CGRYCG	2 cut(s)	105, 223
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	4 cut(s)	101, 105, 162, 223
BslFI	GGGAC	2 cut(s)	51, 163
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	51, 163
BsnI	GGCC	9 cut(s)	83, 97, 104, 143, 226, 266, 359, 496, 554
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	534
BspACI	CCGC	6 cut(s)	134, 156, 236, 267, 348, 639
BspANI	GGCC	9 cut(s)	83, 97, 104, 143, 226, 266, 359, 496, 554
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	6 cut(s)	144, 151, 296, 339, 384, 427
BspMAI	CTGCAG	1 cut(s)	477
BspMI	ACCTGC	2 cut(s)	160, 466
BspOI	GCTAGC	1 cut(s)	21
BspT107I	GGYRCC	2 cut(s)	337, 425
BspTI	CTTAAG	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	2 cut(s)	100, 222
BsrI	ACTGG	2 cut(s)	59, 212
BssAI	RCCGGY	2 cut(s)	100, 222
BssECI	CCNNGG	6 cut(s)	91, 122, 145, 146, 261, 290
BssMI	GATC	1 cut(s)	534
BssT1I	CCWWGG	3 cut(s)	91, 122, 261
Bst2UI	CCWGG	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	77
BstC8I	GCNNGC	4 cut(s)	15, 19, 167, 357
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	489, 598, 640
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	1 cut(s)	537
BstMBI	GATC	1 cut(s)	534
BstMCI	CGRYCG	2 cut(s)	105, 223
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 208, 266, 286, 356
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	473
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstZI	CGGCCG	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	9 cut(s)	83, 97, 104, 143, 226, 266, 359, 496, 554
BtgI	CCRYGG	1 cut(s)	290
BtrI	CACGTC	2 cut(s)	199, 286
BtsCI	GGATG	3 cut(s)	489, 598, 640
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	2 cut(s)	160, 466
Cac8I	GCNNGC	4 cut(s)	15, 19, 167, 357
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	2 cut(s)	100, 222
Cfr13I	GGNCC	6 cut(s)	95, 111, 142, 150, 225, 358
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	1 cut(s)	614
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	536
DpnII	GATC	1 cut(s)	534
DrdI	GACNNNNNNGTC	1 cut(s)	157
DseDI	GACNNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	102
EagI	CGGCCG	1 cut(s)	102
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	3 cut(s)	91, 122, 261
Eco32I	GATATC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	111, 150
Eco52I	CGGCCG	1 cut(s)	102
EcoO109I	RGGNCCY	2 cut(s)	142, 358
EcoRII	CCWGG	1 cut(s)	145
EcoRV	GATATC	1 cut(s)	345
EcoT14I	CCWWGG	3 cut(s)	91, 122, 261
ErhI	CCWWGG	3 cut(s)	91, 122, 261
FaeI	CATG	1 cut(s)	617
FaiI	YATR	2 cut(s)	407, 615
FaqI	GGGAC	2 cut(s)	51, 163
FatI	CATG	1 cut(s)	613
FauI	CCCGC	1 cut(s)	632
Fnu4HI	GCNGC	2 cut(s)	267, 351
FokI	GGATG	3 cut(s)	496, 605, 647
Fsp4HI	GCNGC	2 cut(s)	267, 351
FspBI	CTAG	2 cut(s)	6, 18
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	2 cut(s)	267, 351
GsaI	CCCAGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	9 cut(s)	83, 97, 104, 143, 226, 266, 359, 496, 554
HapII	CCGG	4 cut(s)	101, 105, 162, 223
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	1 cut(s)	617
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	4 cut(s)	101, 105, 162, 223
HphI	GGTGA	4 cut(s)	172, 460, 490, 599
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	5 cut(s)	215, 318, 333, 387, 534
Hpy188III	TCNNGA	3 cut(s)	253, 370, 619
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	3 cut(s)	200, 287, 629
HpyAV	CCTTC	2 cut(s)	102, 530
HpyCH4IV	ACGT	2 cut(s)	198, 285
HpyCH4V	TGCA	5 cut(s)	13, 131, 175, 202, 475
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 208, 266, 286, 356
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	2 cut(s)	198, 285
Hsp92II	CATG	1 cut(s)	617
HspAI	GCGC	1 cut(s)	353
KpnI	GGTACC	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	534
LmnI	GCTCC	3 cut(s)	388, 413, 652
Lsp1109I	GCAGC	1 cut(s)	362
MaeI	CTAG	2 cut(s)	6, 18
MaeII	ACGT	2 cut(s)	198, 285
MaeIII	GTNAC	1 cut(s)	609
MalI	GATC	1 cut(s)	536
MboI	GATC	1 cut(s)	534
MboII	GAAGA	2 cut(s)	38, 318
MfeI	CAATTG	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	4 cut(s)	188, 306, 466, 524
MmeI	TCCRAC	1 cut(s)	523
MseI	TTAA	2 cut(s)	78, 506
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	4 cut(s)	101, 105, 162, 223
MspR9I	CCNGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	5 cut(s)	10, 208, 266, 286, 356
NdeII	GATC	1 cut(s)	534
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	617
NlaIV	GGNNCC	6 cut(s)	144, 151, 296, 339, 384, 427
NspI	RCATGY	1 cut(s)	617
PaqCI	CACCTGC	2 cut(s)	160, 466
PasI	CCCWGGG	1 cut(s)	146
PciI	ACATGT	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	451
PkrI	GCNGC	2 cut(s)	268, 352
PscI	ACATGT	1 cut(s)	613
Psp6I	CCWGG	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	6 cut(s)	144, 151, 296, 339, 384, 427
PspPI	GGNCC	6 cut(s)	95, 111, 142, 150, 225, 358
PstI	CTGCAG	1 cut(s)	477
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	78, 506
SatI	GCNGC	2 cut(s)	267, 351
Sau3AI	GATC	1 cut(s)	534
Sau96I	GGNCC	6 cut(s)	95, 111, 142, 150, 225, 358
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	473
SinI	GGWCC	2 cut(s)	111, 150
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	4 cut(s)	188, 306, 466, 524
SsiI	CCGC	6 cut(s)	134, 156, 236, 267, 348, 639
SspMI	CTAG	2 cut(s)	6, 18
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	3 cut(s)	91, 122, 261
TaiI	ACGT	2 cut(s)	201, 288
TaqI	TCGA	5 cut(s)	282, 371, 464, 537, 618
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	4 cut(s)	188, 306, 466, 524
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	2 cut(s)	78, 506
Tru9I	TTAA	2 cut(s)	78, 506
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	591
TspGWI	ACGGA	1 cut(s)	642
TspRI	CASTG	1 cut(s)	66
Vha464I	CTTAAG	1 cut(s)	77
VneI	GTGCAC	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	111, 150
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	66
XspI	CTAG	2 cut(s)	6, 18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.