Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

40405024 .. 40407047

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGGCGGAGTTGGTCCAAGCTTGTTGGATCTCTGTTTGTGGCGGTGACCGCAAGGGGAGGGGATGTGTGGCAGCAGGGGGTTTCCGGCTATGTGGCGTCGATCAAGCGTTCGGATCTTGCAGCAAGGATTAAGGAGGACGATGGTGGATTTGGAATGGACGACAATGGGTGTCCAATTTCTGGTGTTTCTCGCTTCACCGCACACTCCGAGTTCATCCCCGCCGCCGTCGCCAATGACTTGACCACAACAACCTCCACCACCGCACAACAACGTCATCCTCGTGCTTCTCGATTGGGTTTGGGGATAAGGACTGCTTCTTCCTCCACCGCTAGCGAAATCGTGGAGGCTCAAGGCCTCATTCTAAGGGCCACCGGCCGGAAGAACAGCCACGGCAAGGTTTGCACCACCAAAGGCCCCAAGGATCGCGATATCGGGCTCGTCGCCCACACCGCCATTCAATTCTACGACATGCGGGGACCGGCTTGGATACGACCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

167

Amino Acids

17.72

Weight (kDa)

9.92

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	182
AccII	CGCG	1 cut(s)	429
AclWI	GGATC	3 cut(s)	37, 123, 432
AcoI	YGGCCR	1 cut(s)	376
AcyI	GRCGYC	1 cut(s)	98
AfiI	CCNNNNNNNGG	3 cut(s)	182, 378, 397
AgsI	TTSAA	1 cut(s)	461
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
AlwI	GGATC	3 cut(s)	37, 123, 432
AoxI	GGCC	4 cut(s)	355, 369, 376, 415
ApeKI	GCWGC	2 cut(s)	73, 122
AspS9I	GGNCC	4 cut(s)	15, 369, 416, 479
AsuHPI	GGTGA	2 cut(s)	58, 190
AsuNHI	GCTAGC	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	15, 479
BanII	GRGCYC	1 cut(s)	441
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	85, 134
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	2 cut(s)	212, 409
BciVI	GTATCC	1 cut(s)	483
BfaI	CTAG	2 cut(s)	333, 502
BfuI	GTATCC	1 cut(s)	483
BisI	GCNGC	3 cut(s)	74, 123, 225
BlsI	GCNGC	3 cut(s)	75, 124, 226
Bme18I	GGWCC	2 cut(s)	15, 479
BmgT120I	GGNCC	4 cut(s)	15, 369, 416, 479
BmiI	GGNNCC	2 cut(s)	418, 480
BmtI	GCTAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	391, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 378, 397
Bse118I	RCCGGY	2 cut(s)	374, 481
BseDI	CCNNGG	2 cut(s)	391, 420
BseGI	GGATG	3 cut(s)	70, 216, 277
BseLI	CCNNNNNNNGG	3 cut(s)	182, 378, 397
BseX3I	CGGCCG	1 cut(s)	376
BseXI	GCAGC	2 cut(s)	85, 134
Bsh1236I	CGCG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	4 cut(s)	357, 371, 378, 417
BsiEI	CGRYCG	1 cut(s)	379
BsiSI	CCGG	4 cut(s)	87, 375, 379, 482
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	3 cut(s)	182, 378, 397
BsmFI	GGGAC	1 cut(s)	492
BsnI	GGCC	4 cut(s)	357, 371, 378, 417
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	4 cut(s)	29, 102, 115, 424
Bsp68I	TCGCGA	1 cut(s)	429
BspANI	GGCC	4 cut(s)	357, 371, 378, 417
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	418, 480
BspOI	GCTAGC	1 cut(s)	336
BspPI	GGATC	3 cut(s)	37, 123, 432
BsrFI	RCCGGY	2 cut(s)	374, 481
BssAI	RCCGGY	2 cut(s)	374, 481
BssECI	CCNNGG	2 cut(s)	391, 420
BssMI	GATC	4 cut(s)	29, 102, 115, 424
BssNI	GRCGYC	1 cut(s)	98
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	1 cut(s)	365
BstDSI	CCRYGG	1 cut(s)	391
BstEII	GGTNACC	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	70, 216, 277
BstFNI	CGCG	1 cut(s)	429
BstKTI	GATC	4 cut(s)	32, 105, 118, 427
BstMBI	GATC	4 cut(s)	29, 102, 115, 424
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 230, 402, 452
BstNSI	RCATGY	1 cut(s)	475
BstPI	GGTNACC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	85, 134
BstX2I	RGATCY	2 cut(s)	29, 115
BstYI	RGATCY	2 cut(s)	29, 115
BstZI	CGGCCG	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	483
BsuRI	GGCC	4 cut(s)	357, 371, 378, 417
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	70, 216, 277
BtuMI	TCGCGA	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	334
Cfr10I	RCCGGY	2 cut(s)	374, 481
Cfr13I	GGNCC	4 cut(s)	15, 369, 416, 479
CseI	GACGC	1 cut(s)	87
CviAII	CATG	1 cut(s)	472
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	4 cut(s)	31, 104, 117, 426
DpnII	GATC	4 cut(s)	29, 102, 115, 424
EaeI	YGGCCR	1 cut(s)	376
EagI	CGGCCG	1 cut(s)	376
EciI	GGCGGA	1 cut(s)	22
EclXI	CGGCCG	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	441
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	15, 479
Eco52I	CGGCCG	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	475
FaiI	YATR	2 cut(s)	93, 473
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	1 cut(s)	471
FauI	CCCGC	2 cut(s)	229, 468
Fnu4HI	GCNGC	3 cut(s)	74, 123, 225
FokI	GGATG	3 cut(s)	77, 203, 264
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	3 cut(s)	74, 123, 225
FspBI	CTAG	2 cut(s)	333, 502
GluI	GCNGC	3 cut(s)	74, 123, 225
HaeIII	GGCC	4 cut(s)	357, 371, 378, 417
HapII	CCGG	4 cut(s)	87, 375, 379, 482
HgaI	GACGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	20
HpaII	CCGG	4 cut(s)	87, 375, 379, 482
HphI	GGTGA	2 cut(s)	58, 190
Hpy188I	TCNGA	2 cut(s)	115, 211
Hpy188III	TCNNGA	2 cut(s)	291, 428
Hpy99I	CGWCG	3 cut(s)	103, 233, 446
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	122, 405
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 230, 402, 452
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	475
Kzo9I	GATC	4 cut(s)	29, 102, 115, 424
LpnPI	CCDG	6 cut(s)	62, 100, 168, 388, 392, 495
Lsp1109I	GCAGC	2 cut(s)	85, 134
MaeI	CTAG	2 cut(s)	333, 502
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	4 cut(s)	31, 104, 117, 426
MboI	GATC	4 cut(s)	29, 102, 115, 424
MboII	GAAGA	2 cut(s)	312, 394
MflI	RGATCY	2 cut(s)	29, 115
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	2 cut(s)	177, 461
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	7 cut(s)	53, 130, 265, 291, 334, 340, 368
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	4 cut(s)	87, 375, 379, 482
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	50, 230, 402, 452
NdeII	GATC	4 cut(s)	29, 102, 115, 424
NheI	GCTAGC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	475
NlaIV	GGNNCC	2 cut(s)	418, 480
NmuCI	GTSAC	1 cut(s)	46
NruI	TCGCGA	1 cut(s)	429
NspI	RCATGY	1 cut(s)	475
PceI	AGGCCT	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	2 cut(s)	280, 289
PflMI	CCANNNNNTGG	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	75, 124, 226
PspEI	GGTNACC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	418, 480
PspPI	GGNCC	4 cut(s)	15, 369, 416, 479
PsuI	RGATCY	2 cut(s)	29, 115
RruI	TCGCGA	1 cut(s)	429
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	3 cut(s)	74, 123, 225
Sau3AI	GATC	4 cut(s)	29, 102, 115, 424
Sau96I	GGNCC	4 cut(s)	15, 369, 416, 479
SduI	GDGCHC	1 cut(s)	441
SetI	ASST	4 cut(s)	24, 257, 277, 402
SinI	GGWCC	2 cut(s)	15, 479
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	2 cut(s)	177, 461
SseBI	AGGCCT	1 cut(s)	357
SspMI	CTAG	2 cut(s)	333, 502
StuI	AGGCCT	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	420
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	101, 292
TasI	AATT	2 cut(s)	177, 461
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	73, 122
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	15, 479
XceI	RCATGY	1 cut(s)	475
XspI	CTAG	2 cut(s)	333, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.