Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005791.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

86398 .. 87618

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005791.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggcgatgataaatatgggaggcgggtcacatgaaggggggactgcttcttcctccaccactagcgaaatcgtggaggctcaaggccacattctaagggccagcggccagaaggacagccacagcaaggtttccaccaccaaaggccccagggatcgcagtatcaggctcgtcgcccacaccgccattcaattctacgacatgcaggaccagcttggatacgaccagcctagcaaggtcgtcgattggccgcgcaggacacgcagaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

90

Amino Acids

9.87

Weight (kDa)

9.69

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	253
AciI	CCGC	4 cut(s)	24, 105, 183, 251
AclWI	GGATC	1 cut(s)	162
AcoI	YGGCCR	2 cut(s)	106, 248
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
AlwI	GGATC	1 cut(s)	162
AoxI	GGCC	5 cut(s)	85, 99, 106, 145, 248
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	3 cut(s)	99, 146, 208
AvaII	GGWCC	1 cut(s)	208
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	63, 231
BfuI	GTATCC	1 cut(s)	212
BisI	GCNGC	2 cut(s)	106, 251
BlsI	GCNGC	2 cut(s)	107, 252
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	99, 146, 208
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	149, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	149, 150
BseLI	CCNNNNNNNGG	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	5 cut(s)	87, 101, 108, 147, 250
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	5 cut(s)	87, 101, 108, 147, 250
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	4 cut(s)	24, 105, 183, 251
BspANI	GGCC	5 cut(s)	87, 101, 108, 147, 250
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	149, 150
BssMI	GATC	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	95
BstFNI	CGCG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 211, 261
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	212
BsuRI	GGCC	5 cut(s)	87, 101, 108, 147, 250
BtgZI	GCGATG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	3 cut(s)	99, 146, 208
CviAII	CATG	2 cut(s)	32, 202
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	106, 248
Eco47I	GGWCC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	149
FaeI	CATG	2 cut(s)	35, 205
FaiI	YATR	3 cut(s)	17, 33, 203
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	2 cut(s)	31, 201
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	106, 251
Fsp4HI	GCNGC	2 cut(s)	106, 251
FspBI	CTAG	2 cut(s)	63, 231
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	106, 251
HaeIII	GGCC	5 cut(s)	87, 101, 108, 147, 250
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	35, 205
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
Hpy99I	CGWCG	2 cut(s)	176, 245
HpyAV	CCTTC	2 cut(s)	29, 106
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 211, 261
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	35, 205
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	9 cut(s)	115, 122, 136, 151, 163, 191, 224, 239, 241
MaeI	CTAG	2 cut(s)	63, 231
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	42
MluCI	AATT	1 cut(s)	191
MnlI	CCTC	3 cut(s)	14, 64, 70
MspA1I	CMGCKG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	3 cut(s)	182, 211, 261
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	2 cut(s)	35, 205
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	205
PasI	CCCWGGG	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	107, 252
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	3 cut(s)	99, 146, 208
SatI	GCNGC	2 cut(s)	106, 251
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	3 cut(s)	99, 146, 208
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	4 cut(s)	132, 216, 240, 272
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	4 cut(s)	24, 105, 183, 251
SspMI	CTAG	2 cut(s)	63, 231
StyD4I	CCNGG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	191
TauI	GCSGC	2 cut(s)	108, 253
TseFI	GTSAC	1 cut(s)	27
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	208
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	2 cut(s)	63, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.