Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000438.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

1501 .. 1854

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000438.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggccgtcgattggctcatcaagaaagccaaggccgcaatcgacaagctgccgccgtggaacccgaactcaatttctgttcagacaacatcttctccgacggtgccgatatctgcagcgcaggacacgcagaacgtgagactccatttcttgatggtggaggctccgagttctttgtttgctaattggcgaggcgtaatggtgggcagcagtggagtggcggagctggtgaatcagaagagcttgaattttctgcaggtgaggatggtgtggaggccgaagttaatgttaatctttgtctgcctacaattgcctctgatcgaagttaggctagaggtcgaagttgtctgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

117

Amino Acids

13.06

Weight (kDa)

9.18

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	103
AciI	CCGC	3 cut(s)	36, 53, 221
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	3 cut(s)	49, 226, 243
AluI	AGCT	3 cut(s)	49, 226, 243
Alw26I	GTCTC	1 cut(s)	133
AoxI	GGCC	3 cut(s)	3, 33, 275
ApeKI	GCWGC	3 cut(s)	49, 116, 207
ApoI	RAATTY	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	241, 271
BanI	GGYRCC	1 cut(s)	103
BbvI	GCAGC	3 cut(s)	36, 128, 219
BccI	CCATC	2 cut(s)	148, 259
BceAI	ACGGC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	2 cut(s)	332, 352
BfmI	CTRYAG	2 cut(s)	114, 254
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	5 cut(s)	36, 50, 53, 117, 208
BlsI	GCNGC	5 cut(s)	37, 51, 54, 118, 209
BmiI	GGNNCC	3 cut(s)	62, 105, 165
BsaJI	CCNNGG	2 cut(s)	30, 56
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	30, 56
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseXI	GCAGC	3 cut(s)	36, 128, 219
BshFI	GGCC	3 cut(s)	5, 35, 277
BshNI	GGYRCC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	5, 35, 277
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	3 cut(s)	36, 53, 221
BspANI	GGCC	3 cut(s)	5, 35, 277
BspLI	GGNNCC	3 cut(s)	62, 105, 165
BspMAI	CTGCAG	2 cut(s)	118, 258
BspMI	ACCTGC	1 cut(s)	247
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	30, 56
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	233
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 127
BstSFI	CTRYAG	2 cut(s)	114, 254
BstV1I	GCAGC	3 cut(s)	36, 128, 219
BsuRI	GGCC	3 cut(s)	5, 35, 277
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	121
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
Fnu4HI	GCNGC	5 cut(s)	36, 50, 53, 117, 208
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	5 cut(s)	36, 50, 53, 117, 208
FspBI	CTAG	2 cut(s)	332, 352
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	5 cut(s)	36, 50, 53, 117, 208
HaeIII	GGCC	3 cut(s)	5, 35, 277
HhaI	GCGC	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	2 cut(s)	141, 232
HphI	GGTGA	2 cut(s)	241, 271
Hpy188I	TCNGA	5 cut(s)	84, 99, 168, 237, 318
Hpy188III	TCNNGA	2 cut(s)	22, 151
Hpy99I	CGWCG	2 cut(s)	11, 103
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	116, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 127
HpySE526I	ACGT	1 cut(s)	135
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	318
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	169, 223
LpnPI	CCDG	3 cut(s)	107, 212, 242
Lsp1109I	GCAGC	3 cut(s)	36, 128, 219
MaeI	CTAG	2 cut(s)	332, 352
MaeII	ACGT	1 cut(s)	135
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	2 cut(s)	84, 250
MfeI	CAATTG	1 cut(s)	308
MluCI	AATT	4 cut(s)	72, 184, 247, 308
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	6 cut(s)	154, 185, 255, 267, 324, 328
MseI	TTAA	2 cut(s)	284, 290
MunI	CAATTG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	35, 127
NdeII	GATC	1 cut(s)	318
NlaIV	GGNNCC	3 cut(s)	62, 105, 165
PaqCI	CACCTGC	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	5 cut(s)	37, 51, 54, 118, 209
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	62, 105, 165
PstI	CTGCAG	2 cut(s)	118, 258
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	284, 290
SatI	GCNGC	5 cut(s)	36, 50, 53, 117, 208
Sau3AI	GATC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	135
SetI	ASST	6 cut(s)	51, 138, 228, 245, 261, 339
SfcI	CTRYAG	2 cut(s)	114, 254
Sse9I	AATT	4 cut(s)	72, 184, 247, 308
SsiI	CCGC	3 cut(s)	36, 53, 221
SspMI	CTAG	2 cut(s)	332, 352
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	4 cut(s)	9, 42, 321, 339
TasI	AATT	4 cut(s)	72, 184, 247, 308
TauI	GCSGC	2 cut(s)	38, 55
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	284, 290
Tru9I	TTAA	2 cut(s)	284, 290
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	3 cut(s)	49, 116, 207
TspRI	CASTG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	247
XspI	CTAG	2 cut(s)	332, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.