Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

7812009 .. 7812832

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCACAACAAAGAGAATCAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAAATGAAGCTCAAGATCAACCAGAAGTCGCTCAAGCACAACAAGACTATGGAGCAAGCAGAGTGGAATCTAAACAACCAAGCATGAACAATGAAAGATATGGAAGGATCGTGAAGGTTCAAGGAGGCCACGTTATTAGATCAATTGCGAGAAAAGACAGGCACAGCAAGATCTACACGTCCAAGGGCCCAAGAGACAGAAGGTTCCGGCTTTCAGCTCAAACTGCCATAGAGTTCTATGATGTTCAAGACCGTCTTGGCTTTGATAGACCAAGCAAGGCCATTGACTGGCTCATTCACAAGGCCAAGGCCGCCATTGAAGCTCTCGAAGATTCTTCTACTACACACCAGCCTCAGCATCACCAAGGAGGCAATGCCGAGCCTGAAACTGTCAAAACTCATCAGCCTTTGGACGAGGGCACTATGAAAAATGAGAGCAAAGAACCAGTTCTTGACTATGCTGAAGAAGCCCTCAATTGTGCTCCCAATTTATCAGAGGCCAATTTCATGGAGATGGGTTGGTTTCAAAGTCTGATGGCTTGGAATTACAATGCAGGTGATGGTGGAGAAGGTTGTTCTTTCAATTCATCATCTGTTACTCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

220

Amino Acids

24.92

Weight (kDa)

4.88

Isoelectric Point (pI)

68.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	68 - 148	9.1e-32	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	599
AccB7I	CCANNNNNTGG	1 cut(s)	342
AciI	CCGC	1 cut(s)	366
AclWI	GGATC	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	537
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	5 cut(s)	176, 302, 374, 581, 637
AjiI	CACGTC	1 cut(s)	234
AluBI	AGCT	3 cut(s)	65, 272, 377
AluI	AGCT	3 cut(s)	65, 272, 377
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	6 cut(s)	181, 241, 333, 357, 363, 552
ApaI	GGGCCC	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	501
AspS9I	GGNCC	2 cut(s)	241, 242
AsuHPI	GGTGA	2 cut(s)	407, 623
BaeGI	GKGCMC	2 cut(s)	245, 476
BanII	GRGCYC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	538
BbvCI	CCTCAGC	1 cut(s)	408
BccI	CCATC	3 cut(s)	562, 583, 608
BcoDI	GTCTC	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	659
BfuAI	ACCTGC	1 cut(s)	599
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	241, 242
BmiI	GGNNCC	2 cut(s)	243, 260
BmsI	GCATC	1 cut(s)	421
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	51, 72
BsaJI	CCNNGG	3 cut(s)	237, 360, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	347, 500
Bse3DI	GCAATG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	237, 360, 418
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	2 cut(s)	347, 500
BseRI	GAGGAG	8 cut(s)	41, 44, 47, 50, 53, 56, 59, 62
BseSI	GKGCMC	2 cut(s)	245, 476
BshFI	GGCC	6 cut(s)	183, 243, 335, 359, 365, 554
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	243
BsnI	GGCC	6 cut(s)	183, 243, 335, 359, 365, 554
Bsp120I	GGGCCC	1 cut(s)	241
Bsp1286I	GDGCHC	3 cut(s)	245, 476, 538
Bsp143I	GATC	4 cut(s)	70, 162, 194, 225
BspACI	CCGC	1 cut(s)	366
BspANI	GGCC	6 cut(s)	183, 243, 335, 359, 365, 554
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	243, 260
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	347, 500
BssECI	CCNNGG	3 cut(s)	237, 360, 418
BssMI	GATC	4 cut(s)	70, 162, 194, 225
BssT1I	CCWWGG	3 cut(s)	237, 360, 418
Bst4CI	ACNGT	2 cut(s)	308, 445
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	408
BstKTI	GATC	4 cut(s)	73, 165, 197, 228
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	4 cut(s)	70, 162, 194, 225
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 365, 374, 521
BstSFI	CTRYAG	1 cut(s)	659
BstSLI	GKGCMC	2 cut(s)	245, 476
BstX2I	RGATCY	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	6 cut(s)	183, 243, 335, 359, 365, 554
BtrI	CACGTC	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	241, 242
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviAII	CATG	2 cut(s)	139, 562
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	4 cut(s)	72, 164, 196, 227
DpnII	GATC	4 cut(s)	70, 162, 194, 225
Eco130I	CCWWGG	3 cut(s)	237, 360, 418
Eco24I	GRGCYC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	241
EcoT14I	CCWWGG	3 cut(s)	237, 360, 418
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	3 cut(s)	237, 360, 418
FaeI	CATG	2 cut(s)	142, 565
FaiI	YATR	9 cut(s)	105, 140, 156, 284, 294, 479, 513, 563, 661
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	2 cut(s)	138, 561
Fnu4HI	GCNGC	1 cut(s)	366
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	6 cut(s)	183, 243, 335, 359, 365, 554
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	2 cut(s)	142, 565
HinfI	GANTC	3 cut(s)	17, 122, 386
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	2 cut(s)	407, 623
Hpy188I	TCNGA	2 cut(s)	550, 588
Hpy188III	TCNNGA	5 cut(s)	68, 166, 302, 380, 506
HpyAV	CCTTC	4 cut(s)	153, 163, 249, 617
HpyCH4III	ACNGT	2 cut(s)	308, 445
HpyCH4IV	ACGT	2 cut(s)	186, 233
HpyCH4V	TGCA	1 cut(s)	608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 365, 374, 521
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	2 cut(s)	186, 233
Hsp92II	CATG	2 cut(s)	142, 565
Kzo9I	GATC	4 cut(s)	70, 162, 194, 225
LmnI	GCTCC	2 cut(s)	107, 541
LpnPI	CCDG	8 cut(s)	90, 199, 275, 328, 416, 450, 513, 594
LweI	GCATC	1 cut(s)	421
MaeII	ACGT	2 cut(s)	186, 233
MaeIII	GTNAC	2 cut(s)	3, 649
MalI	GATC	4 cut(s)	72, 164, 196, 227
MboI	GATC	4 cut(s)	70, 162, 194, 225
MboII	GAAGA	4 cut(s)	65, 381, 395, 530
MfeI	CAATTG	2 cut(s)	198, 529
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	3 cut(s)	245, 476, 538
MluCI	AATT	6 cut(s)	198, 529, 541, 556, 598, 637
MroXI	GAANNNNTTC	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	566
MspI	CCGG	1 cut(s)	262
MunI	CAATTG	2 cut(s)	198, 529
MwoI	GCNNNNNNNGC	4 cut(s)	278, 365, 374, 521
NdeII	GATC	4 cut(s)	70, 162, 194, 225
NlaIII	CATG	2 cut(s)	142, 565
NlaIV	GGNNCC	2 cut(s)	243, 260
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	3
PaqCI	CACCTGC	1 cut(s)	599
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	17, 122, 386
PflMI	CCANNNNNTGG	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	367
PspN4I	GGNNCC	2 cut(s)	243, 260
PspOMI	GGGCCC	1 cut(s)	241
PspPI	GGNCC	2 cut(s)	241, 242
PsuI	RGATCY	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	566
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	4 cut(s)	70, 162, 194, 225
Sau96I	GGNCC	2 cut(s)	241, 242
SduI	GDGCHC	3 cut(s)	245, 476, 538
SetI	ASST	9 cut(s)	67, 174, 189, 236, 260, 274, 379, 613, 628
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	66, 87
SmoI	CTYRAG	2 cut(s)	66, 87
Sse9I	AATT	6 cut(s)	198, 529, 541, 556, 598, 637
SsiI	CCGC	1 cut(s)	366
StyI	CCWWGG	3 cut(s)	237, 360, 418
TaaI	ACNGT	2 cut(s)	308, 445
TaiI	ACGT	2 cut(s)	189, 236
TaqI	TCGA	1 cut(s)	381
TasI	AATT	6 cut(s)	198, 529, 541, 556, 598, 637
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	17, 122, 386
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	6 cut(s)	75, 155, 162, 494, 550, 630
Van91I	CCANNNNNTGG	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.