Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000516.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

236423 .. 237422

Gene Structure 1000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000516.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atgttcacctgcctctaccaccgcacaacaacatcatcctccgctgcttctcgattgggtttggggataaggactgattcttcctccaccgctagcgaaatcgtggaggctcaaggccatattctaagggccaccggccggaaggacagccacagtaaggtttgcaccaccaaaggccccagggatcgtagtatcaggctcgtcgcccacaccgccatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

73

Amino Acids

7.86

Weight (kDa)

10.41

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AciI	CCGC	4 cut(s)	22, 42, 90, 213
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	138, 157
AjnI	CCWGG	1 cut(s)	179
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	4 cut(s)	115, 129, 136, 175
ApeKI	GCWGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	129, 176
AsuNHI	GCTAGC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	181
BfaI	CTAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	129, 176
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	181
BmtI	GCTAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	179, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 157
Bse118I	RCCGGY	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	179, 180
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	138, 157
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	4 cut(s)	117, 131, 138, 177
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	135, 139
BslI	CCNNNNNNNGG	2 cut(s)	138, 157
BsnI	GGCC	4 cut(s)	117, 131, 138, 177
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	4 cut(s)	22, 42, 90, 213
BspANI	GGCC	4 cut(s)	117, 131, 138, 177
BspLI	GGNNCC	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	17
BspOI	GCTAGC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	179, 180
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	31
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	4 cut(s)	117, 131, 138, 177
BtsCI	GGATG	1 cut(s)	35
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	129, 176
CviJI	RGCY	7 cut(s)	110, 117, 131, 138, 150, 177, 199
CviKI_1	RGCY	7 cut(s)	110, 117, 131, 138, 150, 177, 199
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	136
EagI	CGGCCG	1 cut(s)	136
EclXI	CGGCCG	1 cut(s)	136
Eco52I	CGGCCG	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	179
FaiI	YATR	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	4 cut(s)	117, 131, 138, 177
HapII	CCGG	2 cut(s)	135, 139
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	135, 139
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	6 cut(s)	22, 148, 152, 166, 181, 193
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	93
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	72
MnlI	CCTC	4 cut(s)	23, 49, 94, 100
MseI	TTAA	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	2 cut(s)	135, 139
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	184
NheI	GCTAGC	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	17
PasI	CCCWGGG	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	129, 176
SaqAI	TTAA	1 cut(s)	220
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	2 cut(s)	129, 176
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	2 cut(s)	11, 162
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
SsiI	CCGC	4 cut(s)	22, 42, 90, 213
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	220
Tru9I	TTAA	1 cut(s)	220
TseI	GCWGC	1 cut(s)	44
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.