Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017665.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

42143 .. 42912

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017665.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgaccaatttccgtaacggctccgtgacggaaattggccgtagaaatgagtccggtatcacattgataactttgactacttcttcctccactgctagcgaaatcgtggaggctcaaggccacattctaagggccaccggcaggaaggacagccacagcaaggtttgcaccaccaaaggccctagggatcgcaatatcaggctggtcgcccacaccgccattcaattctacgacatgcaggacgggcttggatacgaccagcctagcaaggtcgtcgattggccgcgcaggacatgcagaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

101

Amino Acids

11.27

Weight (kDa)

9.77

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	286
AciI	CCGC	2 cut(s)	216, 284
AclWI	GGATC	1 cut(s)	195
AcoI	YGGCCR	2 cut(s)	37, 281
AfiI	CCNNNNNNNGG	2 cut(s)	141, 160
AgsI	TTSAA	1 cut(s)	224
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	5 cut(s)	37, 118, 132, 178, 281
AspA2I	CCTAGG	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	132, 179
AsuNHI	GCTAGC	1 cut(s)	95
AvrII	CCTAGG	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	24, 34
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciVI	GTATCC	1 cut(s)	245
BfaI	CTAG	3 cut(s)	96, 183, 264
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	1 cut(s)	284
BlnI	CCTAGG	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	132, 179
BmiI	GGNNCC	1 cut(s)	22
BmtI	GCTAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 160
Bse118I	RCCGGY	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	2 cut(s)	141, 160
Bsh1236I	CGCG	1 cut(s)	286
BshFI	GGCC	5 cut(s)	39, 120, 134, 180, 283
BsiSI	CCGG	2 cut(s)	54, 138
BslI	CCNNNNNNNGG	2 cut(s)	141, 160
BsnI	GGCC	5 cut(s)	39, 120, 134, 180, 283
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	2 cut(s)	216, 284
BspANI	GGCC	5 cut(s)	39, 120, 134, 180, 283
BspFNI	CGCG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	22
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	182
BstAPI	GCANNNNNTGC	2 cut(s)	165, 294
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 215, 244, 294
BstNSI	RCATGY	2 cut(s)	238, 297
BstUI	CGCG	1 cut(s)	286
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	5 cut(s)	39, 120, 134, 180, 283
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	132, 179
CviAII	CATG	2 cut(s)	235, 294
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	2 cut(s)	37, 281
Eco130I	CCWWGG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	2 cut(s)	238, 297
FaiI	YATR	2 cut(s)	236, 295
FatI	CATG	2 cut(s)	234, 293
Fnu4HI	GCNGC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	3 cut(s)	96, 183, 264
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	284
HaeIII	GGCC	5 cut(s)	39, 120, 134, 180, 283
HapII	CCGG	2 cut(s)	54, 138
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	238, 297
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	2 cut(s)	54, 138
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	3 cut(s)	168, 238, 297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 215, 244, 294
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	238, 297
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	8 cut(s)	67, 127, 151, 184, 188, 224, 272, 274
MaeI	CTAG	3 cut(s)	96, 183, 264
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	2 cut(s)	14, 25
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	75
MluCI	AATT	3 cut(s)	7, 33, 224
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	2 cut(s)	97, 103
MspI	CCGG	2 cut(s)	54, 138
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	4 cut(s)	165, 215, 244, 294
NdeII	GATC	1 cut(s)	187
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	2 cut(s)	238, 297
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	2 cut(s)	238, 297
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	132, 179
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	2 cut(s)	132, 179
SchI	GAGTC	1 cut(s)	59
SetI	ASST	3 cut(s)	165, 273, 305
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	3 cut(s)	7, 33, 224
SsiI	CCGC	2 cut(s)	216, 284
SspMI	CTAG	3 cut(s)	96, 183, 264
StyI	CCWWGG	1 cut(s)	182
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	7, 33, 224
TauI	GCSGC	1 cut(s)	286
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
TspGWI	ACGGA	2 cut(s)	13, 44
TspRI	CASTG	1 cut(s)	97
XceI	RCATGY	2 cut(s)	238, 297
XmaJI	CCTAGG	1 cut(s)	182
XspI	CTAG	3 cut(s)	96, 183, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.