Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000372.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

168907 .. 169738

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000372.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgggggagagccacaacaacctccaccaccgcgcaatgacgtcgtcctccgctgcttctctattgggtttgggtataaggactgcttcttcctccaccgccagcaaaatcgtggaggttcgaggccacattctaagggccaccgaccggaaggaccgccacagcaaggtctacacctccaaaagccccagggaccaccgaatccggctcaccgcccataccgcaattcaattctacgacgtacaagaccggctcggatacgaccggcccagcaaggtcgtcgattgggacatcaagaaagccaaggccgcaatcgacgagctgccgccgtggaacctgaactcaatttctgttcaaacaacatcttctccgacggtgccgatatccgccgcgcagaacacgcagaatgcgagcctccatttctcgatggtggaggctccgagttctttgtctgctaatcggcaaggcgcaatgatgggtagtagcggagtggcggagctggtgaatcagaacagctcaaattttctgcaggtgaggatggtgtggaggtggtgttgcttgtcaggaacgacagagaggatggcagggtgggattggagctgtgatttgagagtggagggctggcagggtctgagttttttatcaatggtgtataaaagggggtcggaggagagaacgagagtggtggtggctaagttgtcggcggcggcggggatgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

240

Amino Acids

26.48

Weight (kDa)

9.79

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	520
AatII	GACGTC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	2 cut(s)	33, 392
AcsI	RAATTY	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	147, 166
AgsI	TTSAA	2 cut(s)	230, 356
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	4 cut(s)	322, 499, 516, 600
AluI	AGCT	4 cut(s)	322, 499, 516, 600
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	4 cut(s)	124, 138, 266, 306
ApeKI	GCWGC	2 cut(s)	53, 322
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	3 cut(s)	35, 394, 470
AspS9I	GGNCC	4 cut(s)	138, 154, 193, 267
AsuHPI	GGTGA	3 cut(s)	202, 514, 544
AvaII	GGWCC	2 cut(s)	154, 193
BanI	GGYRCC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	40, 309
BccI	CCATC	4 cut(s)	421, 469, 532, 574
BceAI	ACGGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	4 cut(s)	24, 58, 262, 296
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	721
BfmI	CTRYAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	251
BisI	GCNGC	7 cut(s)	54, 309, 323, 326, 390, 705, 708
BlsI	GCNGC	7 cut(s)	55, 310, 324, 327, 391, 706, 709
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	2 cut(s)	154, 193
BmgT120I	GGNCC	4 cut(s)	138, 154, 193, 267
BmiI	GGNNCC	4 cut(s)	194, 335, 378, 438
BmrFI	CCNGG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	188, 189, 303, 329
BsaWI	WCCGGW	1 cut(s)	147
BsaXI	ACNNNNNCTCC	4 cut(s)	352, 382, 538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 166
Bse118I	RCCGGY	2 cut(s)	249, 264
Bse3DI	GCAATG	2 cut(s)	42, 477
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	4 cut(s)	188, 189, 303, 329
BseGI	GGATG	3 cut(s)	543, 585, 720
BseLI	CCNNNNNNNGG	2 cut(s)	147, 166
BseMI	GCAATG	2 cut(s)	42, 477
BseMII	CTCAG	1 cut(s)	623
BseRI	GAGGAG	1 cut(s)	683
BseXI	GCAGC	2 cut(s)	40, 309
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	2 cut(s)	33, 392
Bsh1285I	CGRYCG	2 cut(s)	148, 265
BshFI	GGCC	4 cut(s)	126, 140, 268, 308
BshNI	GGYRCC	1 cut(s)	376
BsiEI	CGRYCG	2 cut(s)	148, 265
BsiSI	CCGG	4 cut(s)	148, 205, 250, 265
BslFI	GGGAC	2 cut(s)	206, 302
BslI	CCNNNNNNNGG	2 cut(s)	147, 166
BsmFI	GGGAC	2 cut(s)	206, 302
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	4 cut(s)	126, 140, 268, 308
BspANI	GGCC	4 cut(s)	126, 140, 268, 308
BspCNI	CTCAG	1 cut(s)	624
BspFNI	CGCG	2 cut(s)	33, 392
BspLI	GGNNCC	4 cut(s)	194, 335, 378, 438
BspMAI	CTGCAG	1 cut(s)	531
BspMI	ACCTGC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	42, 477
BsrFI	RCCGGY	2 cut(s)	249, 264
BssAI	RCCGGY	2 cut(s)	249, 264
BssECI	CCNNGG	4 cut(s)	188, 189, 303, 329
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	376
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	103, 412, 623
BstDEI	CTNAG	3 cut(s)	134, 632, 693
BstDSI	CCRYGG	1 cut(s)	329
BstF5I	GGATG	3 cut(s)	543, 585, 720
BstFNI	CGCG	2 cut(s)	33, 392
BstHHI	GCGC	3 cut(s)	35, 394, 470
BstMCI	CGRYCG	2 cut(s)	148, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 308, 400
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	527
BstUI	CGCG	2 cut(s)	33, 392
BstV1I	GCAGC	2 cut(s)	40, 309
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	4 cut(s)	126, 140, 268, 308
BtgI	CCRYGG	1 cut(s)	329
BtsCI	GGATG	3 cut(s)	543, 585, 720
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	3 cut(s)	103, 412, 623
CaiI	CAGNNNCTG	1 cut(s)	631
CfoI	GCGC	3 cut(s)	35, 394, 470
Cfr10I	RCCGGY	2 cut(s)	249, 264
Cfr13I	GGNCC	4 cut(s)	138, 154, 193, 267
Csp6I	GTAC	1 cut(s)	242
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	3 cut(s)	134, 632, 693
EciI	GGCGGA	2 cut(s)	376, 509
Eco130I	CCWWGG	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	154, 193
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaiI	YATR	3 cut(s)	77, 219, 654
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	2 cut(s)	206, 302
FauI	CCCGC	1 cut(s)	703
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	7 cut(s)	54, 309, 323, 326, 390, 705, 708
FokI	GGATG	2 cut(s)	550, 592
Fsp4HI	GCNGC	7 cut(s)	54, 309, 323, 326, 390, 705, 708
FspBI	CTAG	1 cut(s)	721
GlaI	GCGC	3 cut(s)	34, 393, 469
GluI	GCNGC	7 cut(s)	54, 309, 323, 326, 390, 705, 708
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	126, 140, 268, 308
HapII	CCGG	4 cut(s)	148, 205, 250, 265
HhaI	GCGC	3 cut(s)	35, 394, 470
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	3 cut(s)	33, 392, 468
HinP1I	GCGC	3 cut(s)	33, 392, 468
HinfI	GANTC	2 cut(s)	201, 505
HpaII	CCGG	4 cut(s)	148, 205, 250, 265
HphI	GGTGA	3 cut(s)	202, 514, 544
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	6 cut(s)	257, 372, 441, 510, 633, 667
Hpy188III	TCNNGA	3 cut(s)	295, 424, 564
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	5 cut(s)	46, 242, 284, 320, 376
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	2 cut(s)	41, 240
HpyCH4V	TGCA	1 cut(s)	529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 308, 400
HpyF3I	CTNAG	3 cut(s)	134, 632, 693
HpySE526I	ACGT	2 cut(s)	41, 240
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	3 cut(s)	33, 392, 468
LmnI	GCTCC	3 cut(s)	442, 496, 597
Lsp1109I	GCAGC	2 cut(s)	40, 309
MaeI	CTAG	1 cut(s)	721
MaeII	ACGT	2 cut(s)	41, 240
MboII	GAAGA	2 cut(s)	81, 357
MluCI	AATT	4 cut(s)	225, 230, 345, 520
MmeI	TCCRAC	2 cut(s)	395, 645
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	4 cut(s)	148, 205, 250, 265
MspR9I	CCNGG	1 cut(s)	190
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	2 cut(s)	33, 392
MwoI	GCNNNNNNNGC	3 cut(s)	221, 308, 400
NlaIV	GGNNCC	4 cut(s)	194, 335, 378, 438
PaqCI	CACCTGC	1 cut(s)	520
PasI	CCCWGGG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	201, 505
PflFI	GACNNNGTC	1 cut(s)	43
PkrI	GCNGC	7 cut(s)	55, 310, 324, 327, 391, 706, 709
Psp6I	CCWGG	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	4 cut(s)	194, 335, 378, 438
PspPI	GGNCC	4 cut(s)	138, 154, 193, 267
PstI	CTGCAG	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	631
PsyI	GACNNNGTC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SatI	GCNGC	7 cut(s)	54, 309, 323, 326, 390, 705, 708
Sau96I	GGNCC	4 cut(s)	138, 154, 193, 267
ScrFI	CCNGG	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	527
SinI	GGWCC	2 cut(s)	154, 193
Sse9I	AATT	4 cut(s)	225, 230, 345, 520
SspMI	CTAG	1 cut(s)	721
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	2 cut(s)	44, 243
TaqI	TCGA	4 cut(s)	121, 282, 315, 425
TasI	AATT	4 cut(s)	225, 230, 345, 520
TauI	GCSGC	5 cut(s)	311, 328, 392, 707, 710
TfiI	GAWTC	2 cut(s)	201, 505
TseI	GCWGC	2 cut(s)	53, 322
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	154, 193
XapI	RAATTY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	1 cut(s)	721
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.