Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001426.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

31190 .. 31881

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001426.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgcaagactggctcggatacgaccggccctgcaaggcagtcgattgggtcatcaagaaagccaaggccgcaatcgacgagctgccgccgtggaacccgaactcaatttctgttcagacaatatcttctccaccagagtggagtggcggagctggtgaatcagaacagctcgagttttctgcaggtaaggatggtgtggaggccgaagttgttaatctttggctgcctacaattgcttctgatcaaagtttggctagtggccaaagttgtctgctagaccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

94

Amino Acids

10.19

Weight (kDa)

4.27

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	173
AciI	CCGC	3 cut(s)	69, 86, 147
AcoI	YGGCCR	1 cut(s)	259
AleI	CACNNNNGTG	1 cut(s)	136
AluBI	AGCT	3 cut(s)	82, 152, 169
AluI	AGCT	3 cut(s)	82, 152, 169
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	4 cut(s)	26, 66, 201, 259
ApeKI	GCWGC	2 cut(s)	82, 223
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	69, 210
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 161, 195
BciVI	GTATCC	1 cut(s)	11
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	2 cut(s)	255, 275
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	11
BisI	GCNGC	4 cut(s)	69, 83, 86, 224
BlsI	GCNGC	4 cut(s)	70, 84, 87, 225
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	63, 89
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	63, 89
BseGI	GGATG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	69, 210
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	4 cut(s)	28, 68, 203, 261
BsiEI	CGRYCG	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	25
BsnI	GGCC	4 cut(s)	28, 68, 203, 261
BsoBI	CYCGRG	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	3 cut(s)	69, 86, 147
BspANI	GGCC	4 cut(s)	28, 68, 203, 261
BspLI	GGNNCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	63, 89
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 68
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	69, 210
BstXI	CCANNNNNNTGG	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	11
BsuRI	GGCC	4 cut(s)	28, 68, 203, 261
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	27
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	4 cut(s)	69, 83, 86, 224
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	69, 83, 86, 224
FspBI	CTAG	2 cut(s)	255, 275
GluI	GCNGC	4 cut(s)	69, 83, 86, 224
HaeIII	GGCC	4 cut(s)	28, 68, 203, 261
HapII	CCGG	1 cut(s)	25
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	4 cut(s)	17, 117, 163, 241
Hpy188III	TCNNGA	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4V	TGCA	3 cut(s)	4, 33, 182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 68
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	5 cut(s)	38, 43, 138, 147, 168
Lsp1109I	GCAGC	2 cut(s)	69, 210
MaeI	CTAG	2 cut(s)	255, 275
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	117
MfeI	CAATTG	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	2 cut(s)	105, 231
MluNI	TGGCCA	1 cut(s)	261
MnlI	CCTC	1 cut(s)	193
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	136
Msp20I	TGGCCA	1 cut(s)	261
MspI	CCGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	10, 68
NdeII	GATC	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	95
OliI	CACNNNNGTG	1 cut(s)	136
PaeR7I	CTCGAG	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	70, 84, 87, 225
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	27
PspXI	VCTCGAGB	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	4 cut(s)	69, 83, 86, 224
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	27
SetI	ASST	4 cut(s)	84, 154, 171, 187
SfcI	CTRYAG	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	105, 231
SsiI	CCGC	3 cut(s)	69, 86, 147
SspMI	CTAG	2 cut(s)	255, 275
StyI	CCWWGG	1 cut(s)	63
TaqI	TCGA	3 cut(s)	42, 75, 171
TasI	AATT	2 cut(s)	105, 231
TauI	GCSGC	2 cut(s)	71, 88
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	2 cut(s)	82, 223
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	2 cut(s)	255, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.