Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

9763945 .. 9766737

Gene Structure 2793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTAATTACACCTCTTACGACACTTTTACAAGTTTTGAACAAATTCGTTGTCAATGTTGTAATTTTTGTTCTCAATGTTGTAAATAATGTAAATGAATATGGCTCGAGGCCACATTCTAAGGGCCACGGCGGGAAGGACCGCCACGGCAAGGTCTACACCGCCAAAGGCCCCGGGGACCACCACGTCCGGCTCACCGTCCACACCGCCATTCAATTCTACGATGTGCAAGACCGGCTCGAATACGACCGACCCAGCAAGGTCATCGATTGGGTCATCAAGAAAGCCAAGGCCGCAATCGACGAGCTAGACGAGCCGCCGCCGTGGAACCCCGAACTCAATTTCTATTCAAACAACATATTCTCCGACGGTGTCGATATCCGCCTCGCGGGACACACGAACACGAGCCTCCATTTCTCAATTGTGGAGGCTCCGAGTTCTTTGTCTACTAATCGGCGAGGAGAAATGGTGGGTAGCGGCGGAGTGGCGGAGGCTGGTGAATCGAACAACTCGAATTTTCTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

175

Amino Acids

19.39

Weight (kDa)

6.7

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	44 - 105	3.8e-22	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AccI	GTMKAC	2 cut(s)	156, 446
AccII	CGCG	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	44, 514
AfiI	CCNNNNNNNGG	2 cut(s)	151, 388
AgsI	TTSAA	3 cut(s)	40, 215, 351
AjiI	CACGTC	1 cut(s)	187
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Ama87I	CYCGRG	2 cut(s)	106, 173
AoxI	GGCC	4 cut(s)	110, 124, 169, 291
ApoI	RAATTY	2 cut(s)	44, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
Asp700I	GAANNNNTTC	1 cut(s)	44
AspS9I	GGNCC	4 cut(s)	124, 139, 170, 178
AsuC2I	CCSGG	2 cut(s)	174, 175
AsuHPI	GGTGA	2 cut(s)	187, 509
AvaI	CYCGRG	2 cut(s)	106, 173
AvaII	GGWCC	2 cut(s)	139, 178
BauI	CACGAG	1 cut(s)	403
BceAI	ACGGC	3 cut(s)	145, 163, 307
BcgI	CGANNNNNNTGC	3 cut(s)	247, 281, 502
BcnI	CCSGG	2 cut(s)	174, 175
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	4 cut(s)	294, 317, 320, 478
BlsI	GCNGC	4 cut(s)	295, 318, 321, 479
Bme1390I	CCNGG	2 cut(s)	174, 175
Bme18I	GGWCC	2 cut(s)	139, 178
BmeT110I	CYCGRG	2 cut(s)	106, 173
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	4 cut(s)	124, 139, 170, 178
BmiI	GGNNCC	4 cut(s)	172, 179, 329, 432
BmrFI	CCNGG	2 cut(s)	174, 175
BpuMI	CCSGG	2 cut(s)	174, 175
Bsa29I	ATCGAT	1 cut(s)	267
BsaJI	CCNNGG	7 cut(s)	127, 145, 172, 173, 174, 288, 323
BsaXI	ACNNNNNCTCC	4 cut(s)	347, 377, 453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 388
Bse118I	RCCGGY	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	7 cut(s)	127, 145, 172, 173, 174, 288, 323
BseLI	CCNNNNNNNGG	2 cut(s)	151, 388
BseRI	GAGGAG	1 cut(s)	474
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	4 cut(s)	112, 126, 171, 293
BshVI	ATCGAT	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	250
BsiHKCI	CYCGRG	2 cut(s)	106, 173
BsiSI	CCGG	3 cut(s)	174, 190, 235
BslFI	GGGAC	2 cut(s)	191, 405
BslI	CCNNNNNNNGG	2 cut(s)	151, 388
BsmFI	GGGAC	2 cut(s)	191, 405
BsnI	GGCC	4 cut(s)	112, 126, 171, 293
BsoBI	CYCGRG	2 cut(s)	106, 173
BspANI	GGCC	4 cut(s)	112, 126, 171, 293
BspDI	ATCGAT	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	389
BspLI	GGNNCC	4 cut(s)	172, 179, 329, 432
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	7 cut(s)	127, 145, 172, 173, 174, 288, 323
BssSI	CACGAG	1 cut(s)	403
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	199, 371
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	3 cut(s)	127, 145, 323
BstFNI	CGCG	1 cut(s)	389
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 293, 313
BstSCI	CCNGG	2 cut(s)	172, 173
BstUI	CGCG	1 cut(s)	389
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	112, 126, 171, 293
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	3 cut(s)	127, 145, 323
BtrI	CACGTC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	4 cut(s)	124, 139, 170, 178
Cfr9I	CCCGGG	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	120
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EciI	GGCGGA	3 cut(s)	371, 495, 503
Eco130I	CCWWGG	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	139, 178
Eco88I	CYCGRG	2 cut(s)	106, 173
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaiI	YATR	2 cut(s)	102, 359
FaqI	GGGAC	2 cut(s)	191, 405
FauI	CCCGC	2 cut(s)	125, 382
FblI	GTMKAC	2 cut(s)	156, 446
Fnu4HI	GCNGC	4 cut(s)	294, 317, 320, 478
Fsp4HI	GCNGC	4 cut(s)	294, 317, 320, 478
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	4 cut(s)	294, 317, 320, 478
GsaI	CCCAGC	1 cut(s)	258
HaeIII	GGCC	4 cut(s)	112, 126, 171, 293
HapII	CCGG	3 cut(s)	174, 190, 235
HinfI	GANTC	1 cut(s)	500
HpaII	CCGG	3 cut(s)	174, 190, 235
HphI	GGTGA	2 cut(s)	187, 509
Hpy166II	GTNNAC	3 cut(s)	157, 202, 447
Hpy188I	TCNGA	2 cut(s)	367, 435
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	3 cut(s)	157, 202, 447
Hpy99I	CGWCG	2 cut(s)	305, 371
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	199, 371
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 293, 313
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	5 cut(s)	187, 203, 248, 268, 480
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	186
MfeI	CAATTG	1 cut(s)	420
MluCI	AATT	7 cut(s)	6, 44, 63, 215, 340, 420, 514
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	7 cut(s)	24, 102, 395, 419, 421, 452, 484
MroXI	GAANNNNTTC	1 cut(s)	44
MspI	CCGG	3 cut(s)	174, 190, 235
MspR9I	CCNGG	2 cut(s)	174, 175
MunI	CAATTG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	235, 293, 313
NciI	CCSGG	2 cut(s)	174, 175
NlaIV	GGNNCC	4 cut(s)	172, 179, 329, 432
PaeR7I	CTCGAG	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	2 cut(s)	309, 509
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	500
PflFI	GACNNNGTC	1 cut(s)	371
PkrI	GCNGC	4 cut(s)	295, 318, 321, 479
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	4 cut(s)	172, 179, 329, 432
PspPI	GGNCC	4 cut(s)	124, 139, 170, 178
PspXI	VCTCGAGB	1 cut(s)	106
PsrI	GAACNNNNNNTAC	2 cut(s)	54, 86
PsyI	GACNNNGTC	1 cut(s)	371
SatI	GCNGC	4 cut(s)	294, 317, 320, 478
Sau96I	GGNCC	4 cut(s)	124, 139, 170, 178
ScrFI	CCNGG	2 cut(s)	174, 175
SetI	ASST	5 cut(s)	16, 156, 189, 264, 309
Sfr274I	CTCGAG	1 cut(s)	106
SinI	GGWCC	2 cut(s)	139, 178
SlaI	CTCGAG	1 cut(s)	106
SmaI	CCCGGG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	7 cut(s)	6, 44, 63, 215, 340, 420, 514
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	172, 173
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	199, 371
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	7 cut(s)	107, 240, 267, 300, 375, 503, 512
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	7 cut(s)	6, 44, 63, 215, 340, 420, 514
TauI	GCSGC	4 cut(s)	296, 319, 322, 480
TfiI	GAWTC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	111
TspMI	CCCGGG	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	139, 178
XapI	RAATTY	2 cut(s)	44, 514
XhoI	CTCGAG	1 cut(s)	106
XmaI	CCCGGG	1 cut(s)	173
XmiI	GTMKAC	2 cut(s)	156, 446
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.