Rh6DG251700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000293
Physical Location & Seq
Forward (+)
43953704 .. 43953931
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG251700.1

Sequence Viewer

Length: 228 bp
ATGGAAAAAATTAACCACCAGTCGCCGACTCCAAAGTCAAAACACGTCGTGACCAACGACTCAACGAGGTCCACCGTATCTTCAAGAGCTTCGACTCCAACGGTGACTGCAAGATCTCAACCTCGAAGCTCGGCAATGTCCTCAAGGCCCTGGGCTCCAACGTCCCCGACGACAAGCTCCGCTGCTCCTCTGCTCCAGTGCGTGATGGTCGACCTCGGAAGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.94

Weight (kDa)

10.89

Isoelectric Point (pI)

73.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca FvH4_3g08160 FvH4_3g18740
malus_domestica MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis pycom03g18430 pycom11g22850
rosa_chinensis RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 210
AciI CCGC 1 cut(s) 180
AdeI CACNNNGTG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 1 cut(s) 84
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 3 cut(s) 89, 129, 177
AluI AGCT 3 cut(s) 89, 129, 177
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 69, 147
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 151
BglII AGATCT 1 cut(s) 113
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 69
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 69, 147
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 149, 150, 214
Bse1I ACTGG 2 cut(s) 19, 196
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 149, 150, 214
BseMI GCAATG 1 cut(s) 141
BseNI ACTGG 2 cut(s) 19, 196
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 148
BslFI GGGAC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 113
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 2 cut(s) 19, 196
BssECI CCNNGG 3 cut(s) 149, 150, 214
BssMI GATC 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 76, 103
BstKTI GATC 1 cut(s) 116
BstMBI GATC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 148
BtrI CACGTC 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 69, 147
CviJI RGCY 5 cut(s) 89, 129, 148, 155, 177
CviKI_1 RGCY 5 cut(s) 89, 129, 148, 155, 177
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
DraIII CACNNNGTG 1 cut(s) 49
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 157
FaqI GGGAC 1 cut(s) 148
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 183
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 148
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 3 cut(s) 28, 59, 94
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 72, 211
Hpy188I TCNGA 2 cut(s) 218, 227
Hpy188III TCNNGA 2 cut(s) 49, 84
Hpy8I GTNNAC 2 cut(s) 72, 211
Hpy99I CGWCG 2 cut(s) 50, 172
HpyCH4III ACNGT 2 cut(s) 76, 103
HpyCH4IV ACGT 2 cut(s) 45, 161
HpyCH4V TGCA 1 cut(s) 110
HpySE526I ACGT 2 cut(s) 45, 161
Kzo9I GATC 1 cut(s) 113
LmnI GCTCC 4 cut(s) 160, 182, 190, 198
LpnPI CCDG 4 cut(s) 32, 136, 163, 209
Lsp1109I GCAGC 1 cut(s) 169
MaeII ACGT 2 cut(s) 45, 161
MaeIII GTNAC 2 cut(s) 49, 103
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 1 cut(s) 72
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 1 cut(s) 9
MlyI GAGTC 3 cut(s) 22, 53, 88
MmeI TCCRAC 2 cut(s) 122, 182
MnlI CCTC 5 cut(s) 60, 132, 151, 198, 224
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
NdeII GATC 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 2 cut(s) 49, 103
PasI CCCWGGG 1 cut(s) 150
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 167
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 3 cut(s) 22, 53, 88
PpsI GAGTC 3 cut(s) 22, 53, 88
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 2 cut(s) 69, 147
PsuI RGATCY 1 cut(s) 113
SalI GTCGAC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 113
Sau96I GGNCC 2 cut(s) 69, 147
SchI GAGTC 3 cut(s) 22, 53, 88
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 157
SetI ASST 8 cut(s) 48, 71, 91, 124, 131, 164, 179, 216
SinI GGWCC 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 76, 103
TaiI ACGT 2 cut(s) 48, 164
TaqI TCGA 3 cut(s) 92, 124, 210
TasI AATT 1 cut(s) 9
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 2 cut(s) 49, 103
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 2 cut(s) 49, 103
TspRI CASTG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 69
XmiI GTMKAC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.