Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000631.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

159821 .. 161997

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000631.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ctgtggattaaccaccacctcccatcgctttccctgtctgatcactcaagtacctcccgttcggcgtcaagatcgctaccatgctcgacggccactctctcacggtaccttccggctgaacgcctcctctcgctcaacaactcggcggctctaatttacgccgacgggtcgttgatcatctcaacactagcaggttcttcgaccggtatcgggactgcttcttcctccaccgctagcgaaatcgtggaggctcgaggccacattctaaaggccaccggccggaaggaccgccacagcaaggtctgtaccaccaaaggcccaagggaccaccgcgtccggctcgccactcacacagccattcaattctacgacttgcaagaccggctcagatacgaccagcccagcatggcagtcgattggctcatcaagaaagccaaggccgtaatcgacgagctgccatcgtggaacccgaactcaatttctgttcagacaacatcttctccgacgatactgatatccgccgcgcaggacaagcagaacgcgaacctccatttctcgatggtggaggcttcgagttctttgtttgctaatcggcgaggagcaatggtgggcagcagcgaagtggcggagctggtgaatcagaacagctcgaattttctgcaagtgaggatggtgtggaggccgaagttaatgttaatctttgtctgcctacaattgcctctgatcgaagttgggctagaggccgaagttgtcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

252

Amino Acids

27.5

Weight (kDa)

9.08

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	182
Acc65I	GGTACC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	753
AccII	CGCG	3 cut(s)	333, 524, 542
AciI	CCGC	7 cut(s)	146, 231, 289, 331, 519, 522, 626
AcoI	YGGCCR	2 cut(s)	90, 277
AcsI	RAATTY	1 cut(s)	652
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	3 cut(s)	52, 107, 307
AfiI	CCNNNNNNNGG	3 cut(s)	210, 279, 298
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	362
AluBI	AGCT	3 cut(s)	454, 631, 648
AluI	AGCT	3 cut(s)	454, 631, 648
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	8 cut(s)	90, 256, 270, 277, 316, 438, 680, 741
ApeKI	GCWGC	3 cut(s)	454, 612, 615
ApoI	RAATTY	1 cut(s)	652
AsiGI	ACCGGT	1 cut(s)	203
Asp718I	GGTACC	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	3 cut(s)	286, 317, 325
AsuHPI	GGTGA	1 cut(s)	646
AsuNHI	GCTAGC	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	286, 325
BaeI	ACNNNNGTAYC	2 cut(s)	34, 67
BanI	GGYRCC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	441, 624, 627
BccI	CCATC	4 cut(s)	31, 466, 553, 664
BceAI	ACGGC	2 cut(s)	105, 425
BcgI	CGANNNNNNTGC	6 cut(s)	180, 214, 394, 428, 640, 674
BclI	TGATCA	2 cut(s)	40, 174
BfaI	CTAG	4 cut(s)	188, 234, 737, 757
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	5 cut(s)	147, 455, 522, 613, 616
BlsI	GCNGC	5 cut(s)	148, 456, 523, 614, 617
Bme18I	GGWCC	2 cut(s)	286, 325
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	3 cut(s)	286, 317, 325
BmiI	GGNNCC	3 cut(s)	107, 326, 467
BmtI	GCTAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	320, 435
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	4 cut(s)	484, 514, 591, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 279, 298
Bse118I	RCCGGY	3 cut(s)	203, 275, 381
Bse3DI	GCAATG	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	320, 435
BseGI	GGATG	1 cut(s)	675
BseLI	CCNNNNNNNGG	3 cut(s)	210, 279, 298
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	400
BseRI	GAGGAG	2 cut(s)	116, 612
BseX3I	CGGCCG	1 cut(s)	277
BseXI	GCAGC	3 cut(s)	441, 624, 627
BseYI	CCCAGC	1 cut(s)	401
Bsh1236I	CGCG	3 cut(s)	333, 524, 542
Bsh1285I	CGRYCG	2 cut(s)	204, 280
BshFI	GGCC	8 cut(s)	92, 258, 272, 279, 318, 440, 682, 743
BshNI	GGYRCC	1 cut(s)	105
BshTI	ACCGGT	1 cut(s)	203
BsiEI	CGRYCG	2 cut(s)	204, 280
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	6 cut(s)	113, 204, 276, 280, 337, 382
BslFI	GGGAC	2 cut(s)	226, 338
BslI	CCNNNNNNNGG	3 cut(s)	210, 279, 298
BsmFI	GGGAC	2 cut(s)	226, 338
BsnI	GGCC	8 cut(s)	92, 258, 272, 279, 318, 440, 682, 743
BsoBI	CYCGRG	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	40, 71, 174, 723
BspACI	CCGC	7 cut(s)	146, 231, 289, 331, 519, 522, 626
BspANI	GGCC	8 cut(s)	92, 258, 272, 279, 318, 440, 682, 743
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	3 cut(s)	333, 524, 542
BspLI	GGNNCC	3 cut(s)	107, 326, 467
BspMI	ACCTGC	1 cut(s)	182
BspOI	GCTAGC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	3 cut(s)	203, 275, 381
BssAI	RCCGGY	3 cut(s)	203, 275, 381
BssECI	CCNNGG	2 cut(s)	320, 435
BssMI	GATC	4 cut(s)	40, 71, 174, 723
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	320, 435
Bst4CI	ACNGT	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	235, 342
BstDEI	CTNAG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	675
BstFNI	CGCG	3 cut(s)	333, 524, 542
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	4 cut(s)	43, 74, 177, 726
BstMBI	GATC	4 cut(s)	40, 71, 174, 723
BstMCI	CGRYCG	2 cut(s)	204, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 532
BstUI	CGCG	3 cut(s)	333, 524, 542
BstV1I	GCAGC	3 cut(s)	441, 624, 627
BstZI	CGGCCG	1 cut(s)	277
BsuRI	GGCC	8 cut(s)	92, 258, 272, 279, 318, 440, 682, 743
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	675
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	235, 342
CfoI	GCGC	1 cut(s)	526
Cfr10I	RCCGGY	3 cut(s)	203, 275, 381
Cfr13I	GGNCC	3 cut(s)	286, 317, 325
CseI	GACGC	2 cut(s)	54, 322
Csp6I	GTAC	3 cut(s)	51, 106, 306
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	2 cut(s)	81, 406
CviQI	GTAC	3 cut(s)	51, 106, 306
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	4 cut(s)	42, 73, 176, 725
DpnII	GATC	4 cut(s)	40, 71, 174, 723
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	2 cut(s)	90, 277
EagI	CGGCCG	1 cut(s)	277
EciI	GGCGGA	2 cut(s)	508, 641
EclXI	CGGCCG	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	320, 435
Eco32I	GATATC	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	286, 325
Eco52I	CGGCCG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	252
EcoRV	GATATC	1 cut(s)	516
EcoT14I	CCWWGG	2 cut(s)	320, 435
ErhI	CCWWGG	2 cut(s)	320, 435
FaeI	CATG	2 cut(s)	84, 409
FaiI	YATR	2 cut(s)	82, 407
FaqI	GGGAC	2 cut(s)	226, 338
FatI	CATG	2 cut(s)	80, 405
FbaI	TGATCA	2 cut(s)	40, 174
FblI	GTMKAC	1 cut(s)	753
Fnu4HI	GCNGC	5 cut(s)	147, 455, 522, 613, 616
FokI	GGATG	1 cut(s)	682
Fsp4HI	GCNGC	5 cut(s)	147, 455, 522, 613, 616
FspBI	CTAG	4 cut(s)	188, 234, 737, 757
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	5 cut(s)	147, 455, 522, 613, 616
GsaI	CCCAGC	1 cut(s)	405
HaeIII	GGCC	8 cut(s)	92, 258, 272, 279, 318, 440, 682, 743
HapII	CCGG	6 cut(s)	113, 204, 276, 280, 337, 382
HgaI	GACGC	2 cut(s)	54, 322
HhaI	GCGC	1 cut(s)	526
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	84, 409
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	1 cut(s)	637
HpaII	CCGG	6 cut(s)	113, 204, 276, 280, 337, 382
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188I	TCNGA	6 cut(s)	40, 389, 489, 504, 642, 723
Hpy188III	TCNNGA	4 cut(s)	69, 211, 427, 556
Hpy8I	GTNNAC	1 cut(s)	754
Hpy99I	CGWCG	4 cut(s)	91, 167, 452, 508
HpyAV	CCTTC	2 cut(s)	119, 277
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	376, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 532
HpyF3I	CTNAG	1 cut(s)	386
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	84, 409
HspAI	GCGC	1 cut(s)	524
KpnI	GGTACC	1 cut(s)	109
Ksp22I	TGATCA	2 cut(s)	40, 174
Kzo9I	GATC	4 cut(s)	40, 71, 174, 723
LmnI	GCTCC	2 cut(s)	599, 628
Lsp1109I	GCAGC	3 cut(s)	441, 624, 627
MaeI	CTAG	4 cut(s)	188, 234, 737, 757
MalI	GATC	4 cut(s)	42, 73, 176, 725
MboI	GATC	4 cut(s)	40, 71, 174, 723
MboII	GAAGA	3 cut(s)	189, 213, 489
MfeI	CAATTG	1 cut(s)	713
MluCI	AATT	5 cut(s)	153, 362, 477, 652, 713
MmeI	TCCRAC	1 cut(s)	527
MseI	TTAA	3 cut(s)	9, 689, 695
MspI	CCGG	6 cut(s)	113, 204, 276, 280, 337, 382
MunI	CAATTG	1 cut(s)	713
MvnI	CGCG	3 cut(s)	333, 524, 542
MwoI	GCNNNNNNNGC	2 cut(s)	382, 532
NdeII	GATC	4 cut(s)	40, 71, 174, 723
NheI	GCTAGC	1 cut(s)	233
NlaIII	CATG	2 cut(s)	84, 409
NlaIV	GGNNCC	3 cut(s)	107, 326, 467
NmeAIII	GCCGAG	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	637
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	148, 456, 523, 614, 617
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	107, 326, 467
PspPI	GGNCC	3 cut(s)	286, 317, 325
PspXI	VCTCGAGB	1 cut(s)	252
PsrI	GAACNNNNNNTAC	2 cut(s)	43, 75
RsaI	GTAC	3 cut(s)	52, 107, 307
RsaNI	GTAC	3 cut(s)	51, 106, 306
SalI	GTCGAC	1 cut(s)	752
SaqAI	TTAA	3 cut(s)	9, 689, 695
SatI	GCNGC	5 cut(s)	147, 455, 522, 613, 616
Sau3AI	GATC	4 cut(s)	40, 71, 174, 723
Sau96I	GGNCC	3 cut(s)	286, 317, 325
SetI	ASST	9 cut(s)	21, 56, 111, 196, 303, 456, 549, 633, 650
Sfr274I	CTCGAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	286, 325
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	46, 252
SmoI	CTYRAG	2 cut(s)	46, 252
Sse9I	AATT	5 cut(s)	153, 362, 477, 652, 713
SsiI	CCGC	7 cut(s)	146, 231, 289, 331, 519, 522, 626
SspMI	CTAG	4 cut(s)	188, 234, 737, 757
StyI	CCWWGG	2 cut(s)	320, 435
TaaI	ACNGT	1 cut(s)	105
TasI	AATT	5 cut(s)	153, 362, 477, 652, 713
TauI	GCSGC	2 cut(s)	149, 524
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	3 cut(s)	9, 689, 695
Tru9I	TTAA	3 cut(s)	9, 689, 695
TseI	GCWGC	3 cut(s)	454, 612, 615
VpaK11BI	GGWCC	2 cut(s)	286, 325
XapI	RAATTY	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	753
XspI	CTAG	4 cut(s)	188, 234, 737, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.