Rh5DG240600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000293
Physical Location & Seq
Forward (+)
27427556 .. 27427837
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG240600.1

Sequence Viewer

Length: 282 bp
ATGAACTCGTCGGACACGCCGCCGCCACCGACGCCGGAGATGAGGCATCGGATTGTGGAAGCCGAGCAGGCCAGACGAAGCTGTTGGGCGCGGAAAGAGGGAAGTAATTGGCGGGCGAGGAGGTGGTGGCGGGAAACGGGAGGCGGTGGTGGTTGTGGGTGGCGGGGCTTGAGTGACAGGTCGATGAGGCGAGAGAGAGTGAAAGCCCGAGCTGCGGCCGCCATGGAACAACCACGAGAGACTTGTGTCCTCTTGTGGTGCCTCTCGAATCTTGGGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.61

Weight (kDa)

10.93

Isoelectric Point (pI)

69.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca FvH4_3g08160 FvH4_3g18740
malus_domestica MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis pycom03g18430 pycom11g22850
rosa_chinensis RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 258
AccII CGCG 1 cut(s) 91
AciI CCGC 9 cut(s) 20, 23, 91, 112, 130, 144, 163, 215, 219
AcoI YGGCCR 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 81, 212
AluI AGCT 2 cut(s) 81, 212
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 2 cut(s) 69, 216
ApeKI GCWGC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 207
BanI GGYRCC 1 cut(s) 258
BauI CACGAG 1 cut(s) 234
BbvI GCAGC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 280
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 5 cut(s) 20, 23, 213, 216, 219
BlsI GCNGC 5 cut(s) 21, 24, 214, 217, 220
BmeT110I CYCGRG 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 260
BmsI GCATC 1 cut(s) 55
BoxI GACNNNNGTC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 133
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 71, 218
BshNI GGYRCC 1 cut(s) 258
BsiEI CGRYCG 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 2 cut(s) 71, 218
BsoBI CYCGRG 1 cut(s) 207
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 9 cut(s) 20, 23, 91, 112, 130, 144, 163, 215, 219
BspANI GGCC 2 cut(s) 71, 218
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 222
BssNI GRCGYC 1 cut(s) 32
BssSI CACGAG 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 69, 114
BstDSI CCRYGG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 233
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 4 cut(s) 31, 68, 212, 218
BstPAI GACNNNNGTC 1 cut(s) 245
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 199
BstZI CGGCCG 1 cut(s) 216
BsuRI GGCC 2 cut(s) 71, 218
BtgI CCRYGG 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 69, 114
CciNI GCGGCCGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 91
CseI GACGC 1 cut(s) 40
CviAII CATG 1 cut(s) 223
CviJI RGCY 8 cut(s) 62, 71, 81, 168, 206, 212, 218, 279
CviKI_1 RGCY 8 cut(s) 62, 71, 81, 168, 206, 212, 218, 279
EaeI YGGCCR 1 cut(s) 216
EagI CGGCCG 1 cut(s) 216
EclXI CGGCCG 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 222
Eco52I CGGCCG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 226
FaiI YATR 1 cut(s) 224
FatI CATG 1 cut(s) 222
FauI CCCGC 3 cut(s) 105, 123, 156
Fnu4HI GCNGC 5 cut(s) 20, 23, 213, 216, 219
Fsp4HI GCNGC 5 cut(s) 20, 23, 213, 216, 219
FspBI CTAG 1 cut(s) 280
GlaI GCGC 1 cut(s) 90
GluI GCNGC 5 cut(s) 20, 23, 213, 216, 219
HaeIII GGCC 2 cut(s) 71, 218
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 1 cut(s) 226
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 13, 51
Hpy188III TCNNGA 1 cut(s) 265
Hpy99I CGWCG 2 cut(s) 13, 34
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 68, 212, 218
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 226
HspAI GCGC 1 cut(s) 89
LpnPI CCDG 4 cut(s) 48, 53, 85, 163
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 173
MluCI AATT 1 cut(s) 106
MnlI CCTC 8 cut(s) 36, 91, 111, 114, 134, 180, 260, 272
MspI CCGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 4 cut(s) 31, 68, 212, 218
NcoI CCATGG 1 cut(s) 222
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 260
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 173
NotI GCGGCCGC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 5 cut(s) 21, 24, 214, 217, 220
PshAI GACNNNNGTC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 260
SatI GCNGC 5 cut(s) 20, 23, 213, 216, 219
SetI ASST 4 cut(s) 83, 125, 182, 214
SfaNI GCATC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
Sse9I AATT 1 cut(s) 106
SsiI CCGC 9 cut(s) 20, 23, 91, 112, 130, 144, 163, 215, 219
SspMI CTAG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 222
TaqI TCGA 2 cut(s) 182, 266
TasI AATT 1 cut(s) 106
TauI GCSGC 4 cut(s) 22, 25, 218, 221
TfiI GAWTC 1 cut(s) 268
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.