Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

70970640 .. 70976396

Gene Structure 5757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035733

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCACCGTGCAGAAGTGCAGAACTTGTGGAATGATGACTTTGAACTTGTTGATTATGCAGTATGGAAGACTGCTTCTTCCTCCACCGCTAGCGAAATCGTGGAGGCTCGAGGCCACATTCTAAGGGCCACCGGCCGGAAGGACTGCCACAGCAAGGTCTGCATCGCCAAAGGCCCCAAGGACCATCGCGTCCGGCTCGCCGCCCACACCGCCACTCAATTCTACGACGTGCAAGACCGGCTAGGATACGACGTCGATTGTCTCATCAAGAAAGCCAAGGCCGCAATCAACGAGCTACCGCCGTGGAACCCGAACTCAATTTCTGTTCAGACAACATCTTCTCCGACGCCGCCTCGAAGGCCGATCTTCACTGTGCCCAGGCTCTCACTGAGTCCAGCCCGGCCTCAATTCAAGCCCTCCTTCGTGTCGCCAAGGTCACCGGTTGAGCACCCAACAAGCTCTCCAACATGTGTTGACAGTGATGTAGTAGAAGCAGAAGGCGGAGAGATAGAGAAGAAGAACTGGGAAGATTGGAGCGGAGAAGAAGAGAGTGAGGGCTCCAATCAGTGCGTCGGAGACTTGAATTATAGAGGAAAGTCTATAAGGGATGAGGGCAATGGGTCTTCTTCTTCTTCTTGTTTGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

216

Amino Acids

23.74

Weight (kDa)

5.89

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	45 - 112	5.7e-17	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AatII	GACGTC	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	537
AccII	CGCG	1 cut(s)	189
AciI	CCGC	8 cut(s)	87, 201, 210, 282, 299, 350, 501, 537
AcoI	YGGCCR	1 cut(s)	133
AcyI	GRCGYC	2 cut(s)	252, 347
AfiI	CCNNNNNNNGG	2 cut(s)	135, 154
AflIII	ACRYGT	1 cut(s)	467
AgeI	ACCGGT	1 cut(s)	439
AgsI	TTSAA	3 cut(s)	44, 412, 583
AjiI	CACGTC	2 cut(s)	229, 645
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	2 cut(s)	295, 459
AluI	AGCT	2 cut(s)	295, 459
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	266, 570
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	7 cut(s)	112, 126, 133, 172, 279, 359, 401
AsiGI	ACCGGT	1 cut(s)	439
AspS9I	GGNCC	3 cut(s)	126, 173, 181
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	429
AsuNHI	GCTAGC	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	560
BbsI	GAAGAC	2 cut(s)	74, 615
Bbv12I	GWGCWC	1 cut(s)	450
BccI	CCATC	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	266, 570
BfaI	CTAG	2 cut(s)	90, 242
BfuI	GTATCC	1 cut(s)	239
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	3 cut(s)	201, 282, 350
BlsI	GCNGC	3 cut(s)	202, 283, 351
Bme1390I	CCNGG	2 cut(s)	379, 400
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	108
BmgBI	CACGTC	2 cut(s)	229, 645
BmgT120I	GGNCC	3 cut(s)	126, 173, 181
BmiI	GGNNCC	3 cut(s)	175, 308, 559
BmrFI	CCNGG	2 cut(s)	379, 400
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	171
BmtI	GCTAGC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	532
BpiI	GAAGAC	2 cut(s)	74, 615
BpuMI	CCSGG	1 cut(s)	400
BsaHI	GRCGYC	2 cut(s)	252, 347
BsaJI	CCNNGG	5 cut(s)	177, 276, 302, 377, 431
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	4 cut(s)	325, 355, 445, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 154
Bse118I	RCCGGY	3 cut(s)	131, 237, 439
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	5 cut(s)	177, 276, 302, 377, 431
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	2 cut(s)	135, 154
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	378
BseX3I	CGGCCG	1 cut(s)	133
BsgI	GTGCAG	2 cut(s)	30, 38
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	7 cut(s)	114, 128, 135, 174, 281, 361, 403
BshTI	ACCGGT	1 cut(s)	439
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	6 cut(s)	132, 136, 193, 238, 400, 440
BslI	CCNNNNNNNGG	2 cut(s)	135, 154
BsmAI	GTCTC	2 cut(s)	266, 570
BsnI	GGCC	7 cut(s)	114, 128, 135, 174, 281, 361, 403
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	378, 450, 560
Bsp143I	GATC	1 cut(s)	363
BspACI	CCGC	8 cut(s)	87, 201, 210, 282, 299, 350, 501, 537
BspANI	GGCC	7 cut(s)	114, 128, 135, 174, 281, 361, 403
BspCNI	CTCAG	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	175, 308, 559
BspOI	GCTAGC	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	3 cut(s)	131, 237, 439
BsrI	ACTGG	1 cut(s)	527
BssAI	RCCGGY	3 cut(s)	131, 237, 439
BssECI	CCNNGG	5 cut(s)	177, 276, 302, 377, 431
BssMI	GATC	1 cut(s)	363
BssNI	GRCGYC	2 cut(s)	252, 347
BssT1I	CCWWGG	3 cut(s)	177, 276, 431
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	3 cut(s)	8, 373, 479
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	2 cut(s)	252, 347
BstAPI	GCANNNNNTGC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	91, 198
BstDEI	CTNAG	2 cut(s)	122, 389
BstDSI	CCRYGG	1 cut(s)	302
BstEII	GGTNACC	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	613
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	2 cut(s)	266, 570
BstMBI	GATC	1 cut(s)	363
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	5 cut(s)	159, 209, 238, 281, 358
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	471
BstPI	GGTNACC	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	377, 398
BstSLI	GKGCMC	1 cut(s)	378
BstUI	CGCG	1 cut(s)	189
BstV2I	GAAGAC	2 cut(s)	74, 615
BstZI	CGGCCG	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	7 cut(s)	114, 128, 135, 174, 281, 361, 403
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	2 cut(s)	148, 170
BtrI	CACGTC	2 cut(s)	229, 645
BtsCI	GGATG	1 cut(s)	613
BtsIMutI	CAGTG	4 cut(s)	369, 386, 484, 572
Cac8I	GCNNGC	2 cut(s)	91, 198
Cfr10I	RCCGGY	3 cut(s)	131, 237, 439
Cfr13I	GGNCC	3 cut(s)	126, 173, 181
CseI	GACGC	3 cut(s)	178, 355, 559
CspAI	ACCGGT	1 cut(s)	439
CviAII	CATG	1 cut(s)	468
DdeI	CTNAG	2 cut(s)	122, 389
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	516
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	3 cut(s)	177, 276, 431
Eco24I	GRGCYC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	181
Eco52I	CGGCCG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	3 cut(s)	177, 276, 431
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	3 cut(s)	177, 276, 431
FaeI	CATG	1 cut(s)	471
FaiI	YATR	5 cut(s)	57, 64, 469, 588, 602
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FatI	CATG	1 cut(s)	467
Fnu4HI	GCNGC	3 cut(s)	201, 282, 350
FokI	GGATG	1 cut(s)	620
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	3 cut(s)	201, 282, 350
FspBI	CTAG	2 cut(s)	90, 242
GluI	GCNGC	3 cut(s)	201, 282, 350
HaeIII	GGCC	7 cut(s)	114, 128, 135, 174, 281, 361, 403
HapII	CCGG	6 cut(s)	132, 136, 193, 238, 400, 440
HgaI	GACGC	3 cut(s)	178, 355, 559
Hin1I	GRCGYC	2 cut(s)	252, 347
Hin1II	CATG	1 cut(s)	471
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	6 cut(s)	132, 136, 193, 238, 400, 440
HphI	GGTGA	1 cut(s)	429
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	3 cut(s)	330, 345, 575
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	5 cut(s)	230, 254, 257, 349, 575
HpyAV	CCTTC	4 cut(s)	133, 351, 430, 491
HpyCH4III	ACNGT	3 cut(s)	8, 373, 479
HpyCH4IV	ACGT	3 cut(s)	228, 252, 644
HpyCH4V	TGCA	6 cut(s)	4, 11, 19, 59, 162, 232
HpyF10VI	GCNNNNNNNGC	5 cut(s)	159, 209, 238, 281, 358
HpyF3I	CTNAG	2 cut(s)	122, 389
HpySE526I	ACGT	3 cut(s)	228, 252, 644
Hsp92I	GRCGYC	2 cut(s)	252, 347
Hsp92II	CATG	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	363
LmnI	GCTCC	2 cut(s)	534, 563
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	90, 242
MaeII	ACGT	3 cut(s)	228, 252, 644
MaeIII	GTNAC	1 cut(s)	435
MalI	GATC	1 cut(s)	365
MbiI	CCGCTC	1 cut(s)	537
MboI	GATC	1 cut(s)	363
MhlI	GDGCHC	3 cut(s)	378, 450, 560
MluCI	AATT	4 cut(s)	218, 318, 407, 583
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	3 cut(s)	368, 488, 553
MnlI	CCTC	9 cut(s)	91, 97, 104, 363, 414, 427, 547, 584, 604
MspI	CCGG	6 cut(s)	132, 136, 193, 238, 400, 440
MspR9I	CCNGG	2 cut(s)	379, 400
MvaI	CCWGG	1 cut(s)	379
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	5 cut(s)	159, 209, 238, 281, 358
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	1 cut(s)	363
NheI	GCTAGC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	471
NlaIV	GGNNCC	3 cut(s)	175, 308, 559
NmuCI	GTSAC	1 cut(s)	435
NspI	RCATGY	1 cut(s)	471
PaeR7I	CTCGAG	1 cut(s)	108
PciI	ACATGT	1 cut(s)	467
PinAI	ACCGGT	1 cut(s)	439
PkrI	GCNGC	3 cut(s)	202, 283, 351
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PscI	ACATGT	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	377
PspEI	GGTNACC	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	3 cut(s)	175, 308, 559
PspPI	GGNCC	3 cut(s)	126, 173, 181
PspXI	VCTCGAGB	1 cut(s)	108
SatI	GCNGC	3 cut(s)	201, 282, 350
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	3 cut(s)	126, 173, 181
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	2 cut(s)	379, 400
SduI	GDGCHC	3 cut(s)	378, 450, 560
SetI	ASST	7 cut(s)	159, 231, 255, 297, 437, 461, 647
SfaNI	GCATC	1 cut(s)	171
Sfr274I	CTCGAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	181
SlaI	CTCGAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	4 cut(s)	218, 318, 407, 583
SsiI	CCGC	8 cut(s)	87, 201, 210, 282, 299, 350, 501, 537
SspMI	CTAG	2 cut(s)	90, 242
StyD4I	CCNGG	2 cut(s)	377, 398
StyI	CCWWGG	3 cut(s)	177, 276, 431
TaaI	ACNGT	3 cut(s)	8, 373, 479
TaiI	ACGT	3 cut(s)	231, 255, 647
TaqI	TCGA	3 cut(s)	109, 255, 355
TasI	AATT	4 cut(s)	218, 318, 407, 583
TauI	GCSGC	3 cut(s)	203, 284, 352
TscAI	CASTG	4 cut(s)	376, 393, 484, 572
TseFI	GTSAC	1 cut(s)	435
Tsp45I	GTSAC	1 cut(s)	435
TspRI	CASTG	4 cut(s)	376, 393, 484, 572
VpaK11BI	GGWCC	1 cut(s)	181
XceI	RCATGY	1 cut(s)	471
XhoI	CTCGAG	1 cut(s)	108
XspI	CTAG	2 cut(s)	90, 242
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.