Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

6829238 .. 6829975

Gene Structure 738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG086900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTTCGTCAAACTTGAGAGGAAAAAGAGAGAGACTTCAATGACTTCTCATTCCCAAGAGAGTCTCTATCTGCAAATGTCACAACAAAGAGAATCAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAAATGAAGCTCAAGATCAACCAGAAGTCGCTCAAGCACAACAAGACTATGGAGCAAGCAGAGTGGAATCTAAACAACCAAGCATGAACAATGAAAGATATGGAAGGATCGTGAAGGTTCAAGGAGGCCACGTTATTAGATCAATTGCGAGAAAAGACAGGCACAGCAAGATCTACACGTCCAAGGGCCCAAGAGACAGAAGGTTCCGGCTTTCAGCTCAAACTGCCATAGAGTTCTATGATGTTCAAGACCGTCTTGGCTTTGATAGACCAAGCAAGGCCATTGACTGGCTCATTCACAAGGCCAAGGCCGCCATTGAAGCTCTCGAAGATTCTTCTACTACACACCAGCCTCAGCATCACCAAGGAGGCAATGCCGAGCCTGAAACTGTCAAAACTCATCAGCCTTTGGACGAGGGCACTATGAAAAATGAGAGCAAAGAACCAGTTCTTGACTATGCTGAAGAAGCCCTCAATTGTGCTCCCAATTTATCAGAGGCCAATTTCATGGAGATGGGTTGGTTTCAAAGTCTGATGGCTTGGAATTACAATGCAGGTGATGGTGGAGAAGGTTGTTCTTTCAATTCATCATCTGTTACTCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

245

Amino Acids

27.96

Weight (kDa)

5.09

Isoelectric Point (pI)

67.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	93 - 173	1.2e-31	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	674
Acc36I	ACCTGC	1 cut(s)	674
AccB7I	CCANNNNNTGG	1 cut(s)	417
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	612
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	6 cut(s)	39, 251, 377, 449, 656, 712
AjiI	CACGTC	1 cut(s)	309
AluBI	AGCT	3 cut(s)	140, 347, 452
AluI	AGCT	3 cut(s)	140, 347, 452
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	3 cut(s)	26, 68, 318
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	6 cut(s)	256, 316, 408, 432, 438, 627
ApaI	GGGCCC	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	576
AspS9I	GGNCC	2 cut(s)	316, 317
AsuHPI	GGTGA	2 cut(s)	482, 698
BaeGI	GKGCMC	2 cut(s)	320, 551
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	613
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	3 cut(s)	637, 658, 683
BcoDI	GTCTC	3 cut(s)	26, 68, 318
BfmI	CTRYAG	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	674
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	316, 317
BmiI	GGNNCC	2 cut(s)	318, 335
BmsI	GCATC	1 cut(s)	496
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	3 cut(s)	35, 126, 147
BsaJI	CCNNGG	3 cut(s)	312, 435, 493
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	422, 575
Bse3DI	GCAATG	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	312, 435, 493
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	2 cut(s)	422, 575
BseRI	GAGGAG	8 cut(s)	116, 119, 122, 125, 128, 131, 134, 137
BseSI	GKGCMC	2 cut(s)	320, 551
BshFI	GGCC	6 cut(s)	258, 318, 410, 434, 440, 629
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	3 cut(s)	26, 68, 318
BsnI	GGCC	6 cut(s)	258, 318, 410, 434, 440, 629
Bsp120I	GGGCCC	1 cut(s)	316
Bsp1286I	GDGCHC	3 cut(s)	320, 551, 613
Bsp143I	GATC	4 cut(s)	145, 237, 269, 300
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	6 cut(s)	258, 318, 410, 434, 440, 629
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	318, 335
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	508
BsrI	ACTGG	2 cut(s)	422, 575
BssECI	CCNNGG	3 cut(s)	312, 435, 493
BssMI	GATC	4 cut(s)	145, 237, 269, 300
BssT1I	CCWWGG	3 cut(s)	312, 435, 493
Bst4CI	ACNGT	2 cut(s)	383, 520
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	483
BstKTI	GATC	4 cut(s)	148, 240, 272, 303
BstMAI	GTCTC	3 cut(s)	26, 68, 318
BstMBI	GATC	4 cut(s)	145, 237, 269, 300
BstMWI	GCNNNNNNNGC	4 cut(s)	353, 440, 449, 596
BstSFI	CTRYAG	1 cut(s)	734
BstSLI	GKGCMC	2 cut(s)	320, 551
BstX2I	RGATCY	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	6 cut(s)	258, 318, 410, 434, 440, 629
BtrI	CACGTC	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	316, 317
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	2 cut(s)	214, 637
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	4 cut(s)	147, 239, 271, 302
DpnII	GATC	4 cut(s)	145, 237, 269, 300
Eco130I	CCWWGG	3 cut(s)	312, 435, 493
Eco24I	GRGCYC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	316
EcoT14I	CCWWGG	3 cut(s)	312, 435, 493
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	3 cut(s)	312, 435, 493
FaeI	CATG	2 cut(s)	217, 640
FaiI	YATR	9 cut(s)	180, 215, 231, 359, 369, 554, 588, 638, 736
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	2 cut(s)	213, 636
Fnu4HI	GCNGC	1 cut(s)	441
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	441
GluI	GCNGC	1 cut(s)	441
HaeIII	GGCC	6 cut(s)	258, 318, 410, 434, 440, 629
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	2 cut(s)	217, 640
HinfI	GANTC	4 cut(s)	61, 92, 197, 461
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	2 cut(s)	482, 698
Hpy188I	TCNGA	2 cut(s)	625, 663
Hpy188III	TCNNGA	5 cut(s)	143, 241, 377, 455, 581
HpyAV	CCTTC	4 cut(s)	228, 238, 324, 692
HpyCH4III	ACNGT	2 cut(s)	383, 520
HpyCH4IV	ACGT	2 cut(s)	261, 308
HpyCH4V	TGCA	2 cut(s)	73, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	353, 440, 449, 596
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	2 cut(s)	261, 308
Hsp92II	CATG	2 cut(s)	217, 640
Kzo9I	GATC	4 cut(s)	145, 237, 269, 300
LmnI	GCTCC	2 cut(s)	182, 616
LpnPI	CCDG	8 cut(s)	165, 274, 350, 403, 491, 525, 588, 669
LweI	GCATC	1 cut(s)	496
MaeII	ACGT	2 cut(s)	261, 308
MaeIII	GTNAC	2 cut(s)	78, 724
MalI	GATC	4 cut(s)	147, 239, 271, 302
MboI	GATC	4 cut(s)	145, 237, 269, 300
MboII	GAAGA	4 cut(s)	140, 456, 470, 605
MfeI	CAATTG	2 cut(s)	273, 604
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	3 cut(s)	320, 551, 613
MluCI	AATT	6 cut(s)	273, 604, 616, 631, 673, 712
MlyI	GAGTC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	641
MspI	CCGG	1 cut(s)	337
MunI	CAATTG	2 cut(s)	273, 604
MwoI	GCNNNNNNNGC	4 cut(s)	353, 440, 449, 596
NdeII	GATC	4 cut(s)	145, 237, 269, 300
NlaIII	CATG	2 cut(s)	217, 640
NlaIV	GGNNCC	2 cut(s)	318, 335
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	78
PaqCI	CACCTGC	1 cut(s)	674
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	92, 197, 461
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	318, 335
PspOMI	GGGCCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	316, 317
PsuI	RGATCY	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	641
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	4 cut(s)	145, 237, 269, 300
Sau96I	GGNCC	2 cut(s)	316, 317
SchI	GAGTC	1 cut(s)	70
SduI	GDGCHC	3 cut(s)	320, 551, 613
SetI	ASST	9 cut(s)	142, 249, 264, 311, 335, 349, 454, 688, 703
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	3 cut(s)	14, 141, 162
SmoI	CTYRAG	3 cut(s)	14, 141, 162
Sse9I	AATT	6 cut(s)	273, 604, 616, 631, 673, 712
SsiI	CCGC	1 cut(s)	441
StyI	CCWWGG	3 cut(s)	312, 435, 493
TaaI	ACNGT	2 cut(s)	383, 520
TaiI	ACGT	2 cut(s)	264, 311
TaqI	TCGA	1 cut(s)	456
TasI	AATT	6 cut(s)	273, 604, 616, 631, 673, 712
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	3 cut(s)	92, 197, 461
TseFI	GTSAC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	6 cut(s)	150, 230, 237, 569, 625, 705
Van91I	CCANNNNNTGG	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.