Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

68832932 .. 68835969

Gene Structure 3038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGGCAGAGCCTTTTGCTATCTGCAGGTTTCAGAAATCCCAGAACACCAGCTGGAGATCATCATCATCATCAACATCAGAAAAAGCATTAGGCAAATTGAGAGCTGGGAAAGTAGAGATTCAGAAACCCAATAAGCAAAAGTTGATTCTTGTTGTAGCTAAAAATAAGTCTAAGTCTAGGTCTAGTACTATTCCTGCCGCTGCTGCTACTGTTCCATTAAAAGCTGGAAAAGGAAACTCACAGGTCCTTGACTCTGGATCCTCAAGGGAGCCATTACCATTTCCAGTACCCTCATTCTTCTACTTCAACCACCGCTTTCGGAGAACCCACCATCGAATATGCAGGAAGAAAAATGGGGAGAGCCACAACAACCTCCTTCACCGCTCAACGACGTCGTCCTCCGCTGCTTCTCGATTGGGTTTGGGGATAAGGACTGCTTCTTCCTCCACCACCAGCGAGATCGTGGAGACTCGAGGCCACATTCTAAGGGCCACCGGCCGCAAGGACCGCCACAGCAAGGTCTGCACCGCCAAAGGCCCCAGGGACCGCCGCGTCCGGCTGGCCGCGCACACCGCCATTCAATTCTACGACGTGCAGGACCGGCTTGGATACGACCGGCCCAGCAAGGCCGTCGATTGGCTCATCAAGAAAGCCAAGGCGGCAATCGACGAGCTCGACGAGCTGCCGCCGTGGAACCCGAACTCAATTTCTGTTCAGACAACATCTTCTCCGACGGTGCCGATATCCGCCGCGCAGGACACGCAGAACGCGAGCCTCCGTTTCTCGATGGTGGAGGCTCCGAGTTCTTTGTCTGCTAATCGGCGAGGCGCAATGGTGGGTAGCAGCGGAGTGGCGGAGCTGGTGAATCAGAACAGCTCCAATTTTCTGCCGCCGTCGATGGACTCGGACTCAATTGCAGATACTATCAAGTCTTTCTTCCCAATGGGTGCGGCGACGGCGGCCGAAACGCAGTCGTTTCACCCCGCCAGCTACCCGCCGGATTTGCTGTCCAGAACGAGCAGCCAGAGCCAAGATCTGCGACTGTCTCTCCAGTCTTTCCAAGACCCAATTCTTCTCCACCACCACCACCACCAAGCTCATCATCATCAGACCCATCACGAAAATGAGCAAGCTTTTCTTACCCCAAACCATCTCGGGTTTGATAGCTCCGCCTCCACGTGGACAGAGCACCACCAGCAGCAGCAGCAGGCGGAGCTCCACAGGTTCCAGAGACTGGTGGCTTGGAACAATGCGGGTGGTGATAGCAACAACAACAACAACAACAGCGGTGGTGGTGGAGTTGAGTTTACATTCAACTCGCAACCGCAGACTCAGTCGCAGTCGCCGACTCTGCAGCCGTTCTTGTTCGGCCAAAACCAGTTCTTTTCTTCACAGAGGGGACCCCTTCAGTCCAGTAACACGCCTTCGGTTCATGCCTGGATCGACCACAACGACCTTTCGGACCATCAACATCAGATGGCGCCGTCAATCCATAACCATCATCATCATCATCAACAGTCTTCCATTTCCGGCATGGGATTCGCCTCCGGCGGATTCTCCGGCTTCCACATTCCGGCACGAATCCAGGGCGAGGAGGAGCACGACGGCATCTCAGACAAGCCGTCCTCTGCTTCCTCCAATTCTCGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

550

Amino Acids

60.48

Weight (kDa)

9.72

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	166 - 257	4.5e-29	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	551
AatII	GACGTC	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	15
AccB1I	GGYRCC	2 cut(s)	736, 1480
AccB7I	CCANNNNNTGG	1 cut(s)	1234
AccBSI	CCGCTC	1 cut(s)	384
AccII	CGCG	4 cut(s)	552, 566, 752, 770
AclWI	GGATC	3 cut(s)	252, 265, 1448
AcoI	YGGCCR	4 cut(s)	496, 561, 960, 1369
AcuI	CTGAAG	1 cut(s)	1391
AcvI	CACGTG	1 cut(s)	1179
AcyI	GRCGYC	2 cut(s)	392, 1481
AfaI	GTAC	2 cut(s)	187, 288
AfiI	CCNNNNNNNGG	6 cut(s)	517, 636, 1179, 1234, 1573, 1591
AgsI	TTSAA	3 cut(s)	307, 581, 1315
AhdI	GACNNNNNGTC	1 cut(s)	1621
AjiI	CACGTC	1 cut(s)	592
AjnI	CCWGG	3 cut(s)	539, 1436, 1584
AjuI	GAANNNNNNNTTGG	2 cut(s)	1053, 1085
Alw21I	GWGCWC	4 cut(s)	675, 1191, 1218, 1602
Alw26I	GTCTC	3 cut(s)	461, 1050, 1225
AlwI	GGATC	3 cut(s)	252, 265, 1448
AlwNI	CAGNNNCTG	1 cut(s)	1234
Ama87I	CYCGRG	2 cut(s)	471, 1154
AoxI	GGCC	9 cut(s)	475, 489, 496, 535, 561, 617, 627, 960, 1369
AspLEI	GCGC	4 cut(s)	568, 754, 830, 1483
AspS9I	GGNCC	9 cut(s)	244, 489, 505, 536, 544, 598, 618, 1400, 1462
AsuHPI	GGTGA	4 cut(s)	371, 874, 971, 1271
AvaI	CYCGRG	2 cut(s)	471, 1154
AvaII	GGWCC	6 cut(s)	244, 505, 544, 598, 1400, 1462
BamHI	GGATCC	1 cut(s)	257
BanI	GGYRCC	2 cut(s)	736, 1480
BanII	GRGCYC	2 cut(s)	675, 1218
BarI	GAAGNNNNNNTAC	2 cut(s)	1408, 1440
BbrPI	CACGTG	1 cut(s)	1179
BbsI	GAAGAC	1 cut(s)	1512
Bbv12I	GWGCWC	4 cut(s)	675, 1191, 1218, 1602
BccI	CCATC	8 cut(s)	339, 781, 892, 1122, 1158, 1471, 1473, 1506
BceAI	ACGGC	8 cut(s)	614, 673, 877, 972, 1342, 1468, 1606, 1621
BcgI	CGANNNNNNTGC	4 cut(s)	613, 647, 1522, 1556
BciT130I	CCWGG	3 cut(s)	541, 1438, 1586
BciVI	GTATCC	1 cut(s)	602
BcoDI	GTCTC	3 cut(s)	461, 1050, 1225
BfaI	CTAG	2 cut(s)	177, 183
BfmI	CTRYAG	2 cut(s)	22, 1352
BfoI	RGCGCY	1 cut(s)	1484
BfuAI	ACCTGC	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	602
BglI	GCCNNNNNGGC	1 cut(s)	659
BglII	AGATCT	1 cut(s)	1033
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	3 cut(s)	541, 1438, 1586
Bme18I	GGWCC	6 cut(s)	244, 505, 544, 598, 1400, 1462
BmeRI	GACNNNNNGTC	1 cut(s)	1621
BmeT110I	CYCGRG	2 cut(s)	471, 1154
BmgBI	CACGTC	1 cut(s)	592
BmgT120I	GGNCC	9 cut(s)	244, 489, 505, 536, 544, 598, 618, 1400, 1462
BmrFI	CCNGG	3 cut(s)	541, 1438, 1586
BmsI	GCATC	1 cut(s)	1617
BpiI	GAAGAC	1 cut(s)	1512
BpmI	CTGGAG	2 cut(s)	73, 1034
BpuEI	CTTGAG	1 cut(s)	247
BsaAI	YACGTR	1 cut(s)	1179
BsaBI	GATNNNNATC	1 cut(s)	61
BsaHI	GRCGYC	2 cut(s)	392, 1481
BsaJI	CCNNGG	5 cut(s)	539, 540, 654, 689, 1585
BsaXI	ACNNNNNCTCC	4 cut(s)	712, 742, 1032, 1062
Bsc4I	CCNNNNNNNGG	6 cut(s)	517, 636, 1179, 1234, 1573, 1591
Bse118I	RCCGGY	3 cut(s)	494, 600, 615
Bse1I	ACTGG	5 cut(s)	284, 1051, 1239, 1378, 1413
Bse3DI	GCAATG	1 cut(s)	837
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	3 cut(s)	541, 1438, 1586
BseDI	CCNNGG	5 cut(s)	539, 540, 654, 689, 1585
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	6 cut(s)	517, 636, 1179, 1234, 1573, 1591
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	2 cut(s)	1346, 1626
BseNI	ACTGG	5 cut(s)	284, 1051, 1239, 1378, 1413
BseRI	GAGGAG	2 cut(s)	1607, 1610
BseX3I	CGGCCG	2 cut(s)	496, 960
BseYI	CCCAGC	2 cut(s)	104, 620
BsgI	GTGCAG	2 cut(s)	508, 614
Bsh1236I	CGCG	4 cut(s)	552, 566, 752, 770
Bsh1285I	CGRYCG	3 cut(s)	499, 616, 963
BshFI	GGCC	9 cut(s)	477, 491, 498, 537, 563, 619, 629, 962, 1371
BshNI	GGYRCC	2 cut(s)	736, 1480
BsiEI	CGRYCG	3 cut(s)	499, 616, 963
BsiHKAI	GWGCWC	4 cut(s)	675, 1191, 1218, 1602
BsiHKCI	CYCGRG	2 cut(s)	471, 1154
BsiSI	CCGG	9 cut(s)	495, 556, 601, 616, 998, 1530, 1548, 1560, 1574
BslFI	GGGAC	2 cut(s)	557, 1413
BslI	CCNNNNNNNGG	6 cut(s)	517, 636, 1179, 1234, 1573, 1591
BsmAI	GTCTC	3 cut(s)	461, 1050, 1225
BsmFI	GGGAC	2 cut(s)	557, 1413
BsnI	GGCC	9 cut(s)	477, 491, 498, 537, 563, 619, 629, 962, 1371
BsoBI	CYCGRG	2 cut(s)	471, 1154
Bsp1286I	GDGCHC	4 cut(s)	675, 1191, 1218, 1602
Bsp143I	GATC	5 cut(s)	56, 257, 459, 1033, 1440
BspANI	GGCC	9 cut(s)	477, 491, 498, 537, 563, 619, 629, 962, 1371
BspCNI	CTCAG	2 cut(s)	1345, 1625
BspFNI	CGCG	4 cut(s)	552, 566, 752, 770
BspMAI	CTGCAG	2 cut(s)	26, 1356
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	252, 265, 1448
BspT107I	GGYRCC	2 cut(s)	736, 1480
BsrBI	CCGCTC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	837
BsrFI	RCCGGY	3 cut(s)	494, 600, 615
BsrI	ACTGG	5 cut(s)	284, 1051, 1239, 1378, 1413
BssAI	RCCGGY	3 cut(s)	494, 600, 615
BssECI	CCNNGG	5 cut(s)	539, 540, 654, 689, 1585
BssMI	GATC	5 cut(s)	56, 257, 459, 1033, 1440
BssNI	GRCGYC	2 cut(s)	392, 1481
BssT1I	CCWWGG	1 cut(s)	654
Bst2UI	CCWGG	3 cut(s)	541, 1438, 1586
Bst4CI	ACNGT	4 cut(s)	211, 736, 1044, 1518
BstACI	GRCGYC	2 cut(s)	392, 1481
BstAPI	GCANNNNNTGC	1 cut(s)	522
BstBAI	YACGTR	1 cut(s)	1179
BstC8I	GCNNGC	5 cut(s)	561, 772, 988, 1131, 1209
BstDEI	CTNAG	4 cut(s)	171, 485, 1332, 1612
BstDSI	CCRYGG	1 cut(s)	689
BstFNI	CGCG	4 cut(s)	552, 566, 752, 770
BstH2I	RGCGCY	1 cut(s)	1484
BstHHI	GCGC	4 cut(s)	568, 754, 830, 1483
BstKTI	GATC	5 cut(s)	59, 260, 462, 1036, 1443
BstMAI	GTCTC	3 cut(s)	461, 1050, 1225
BstMBI	GATC	5 cut(s)	56, 257, 459, 1033, 1440
BstMCI	CGRYCG	3 cut(s)	499, 616, 963
BstNI	CCWGG	3 cut(s)	541, 1438, 1586
BstSCI	CCNGG	3 cut(s)	539, 1436, 1584
BstSFI	CTRYAG	2 cut(s)	22, 1352
BstUI	CGCG	4 cut(s)	552, 566, 752, 770
BstV2I	GAAGAC	1 cut(s)	1512
BstX2I	RGATCY	2 cut(s)	257, 1033
BstYI	RGATCY	2 cut(s)	257, 1033
BstZI	CGGCCG	2 cut(s)	496, 960
BsuI	GTATCC	1 cut(s)	602
BsuRI	GGCC	9 cut(s)	477, 491, 498, 537, 563, 619, 629, 962, 1371
BtgI	CCRYGG	1 cut(s)	689
BtrI	CACGTC	1 cut(s)	592
BveI	ACCTGC	1 cut(s)	15
Cac8I	GCNNGC	5 cut(s)	561, 772, 988, 1131, 1209
CaiI	CAGNNNCTG	1 cut(s)	1234
CfoI	GCGC	4 cut(s)	568, 754, 830, 1483
Cfr10I	RCCGGY	3 cut(s)	494, 600, 615
Cfr13I	GGNCC	9 cut(s)	244, 489, 505, 536, 544, 598, 618, 1400, 1462
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	186, 287
CspCI	CAANNNNNGTGG	4 cut(s)	1237, 1270, 1272, 1305
CviAII	CATG	2 cut(s)	1433, 1534
CviQI	GTAC	2 cut(s)	186, 287
DdeI	CTNAG	4 cut(s)	171, 485, 1332, 1612
DinI	GGCGCC	1 cut(s)	1482
DpnI	GATC	5 cut(s)	58, 259, 461, 1035, 1442
DpnII	GATC	5 cut(s)	56, 257, 459, 1033, 1440
DrdI	GACNNNNNNGTC	1 cut(s)	551
DriI	GACNNNNNGTC	1 cut(s)	1621
DseDI	GACNNNNNNGTC	1 cut(s)	551
EaeI	YGGCCR	4 cut(s)	496, 561, 960, 1369
EagI	CGGCCG	2 cut(s)	496, 960
Eam1105I	GACNNNNNGTC	1 cut(s)	1621
EciI	GGCGGA	5 cut(s)	736, 869, 1159, 1226, 1566
Ecl136II	GAGCTC	2 cut(s)	673, 1216
EclXI	CGGCCG	2 cut(s)	496, 960
Eco130I	CCWWGG	1 cut(s)	654
Eco24I	GRGCYC	2 cut(s)	675, 1218
Eco32I	GATATC	1 cut(s)	744
Eco47I	GGWCC	6 cut(s)	244, 505, 544, 598, 1400, 1462
Eco52I	CGGCCG	2 cut(s)	496, 960
Eco53kI	GAGCTC	2 cut(s)	673, 1216
Eco57I	CTGAAG	1 cut(s)	1391
Eco72I	CACGTG	1 cut(s)	1179
Eco88I	CYCGRG	2 cut(s)	471, 1154
EcoICRI	GAGCTC	2 cut(s)	673, 1216
EcoO109I	RGGNCCY	3 cut(s)	244, 536, 1400
EcoRII	CCWGG	3 cut(s)	539, 1436, 1584
EcoRV	GATATC	1 cut(s)	744
EcoT14I	CCWWGG	1 cut(s)	654
EcoT38I	GRGCYC	2 cut(s)	675, 1218
EgeI	GGCGCC	1 cut(s)	1482
EheI	GGCGCC	1 cut(s)	1482
ErhI	CCWWGG	1 cut(s)	654
FaeI	CATG	2 cut(s)	1436, 1537
FaiI	YATR	4 cut(s)	340, 1434, 1494, 1535
FalI	AAGNNNNNCTT	6 cut(s)	421, 453, 920, 952, 1122, 1154
FaqI	GGGAC	2 cut(s)	557, 1413
FatI	CATG	2 cut(s)	1432, 1533
FauI	CCCGC	3 cut(s)	991, 1002, 1246
FriOI	GRGCYC	2 cut(s)	675, 1218
FspBI	CTAG	2 cut(s)	177, 183
GlaI	GCGC	4 cut(s)	567, 753, 829, 1482
GsaI	CCCAGC	2 cut(s)	108, 624
GsuI	CTGGAG	2 cut(s)	73, 1034
HaeII	RGCGCY	1 cut(s)	1484
HaeIII	GGCC	9 cut(s)	477, 491, 498, 537, 563, 619, 629, 962, 1371
HapII	CCGG	9 cut(s)	495, 556, 601, 616, 998, 1530, 1548, 1560, 1574
HgaI	GACGC	1 cut(s)	541
HhaI	GCGC	4 cut(s)	568, 754, 830, 1483
Hin1I	GRCGYC	2 cut(s)	392, 1481
Hin1II	CATG	2 cut(s)	1436, 1537
Hin6I	GCGC	4 cut(s)	566, 752, 828, 1481
HinP1I	GCGC	4 cut(s)	566, 752, 828, 1481
HindIII	AAGCTT	1 cut(s)	1131
HpaII	CCGG	9 cut(s)	495, 556, 601, 616, 998, 1530, 1548, 1560, 1574
HphI	GGTGA	4 cut(s)	371, 874, 971, 1271
Hpy166II	GTNNAC	2 cut(s)	1182, 1308
Hpy188III	TCNNGA	7 cut(s)	255, 411, 646, 784, 1011, 1118, 1228
Hpy8I	GTNNAC	2 cut(s)	1182, 1308
HpyAV	CCTTC	3 cut(s)	386, 1415, 1434
HpyCH4III	ACNGT	4 cut(s)	211, 736, 1044, 1518
HpyCH4IV	ACGT	3 cut(s)	392, 591, 1178
HpyCH4V	TGCA	6 cut(s)	24, 342, 525, 595, 917, 1354
HpyF3I	CTNAG	4 cut(s)	171, 485, 1332, 1612
HpySE526I	ACGT	3 cut(s)	392, 591, 1178
Hsp92I	GRCGYC	2 cut(s)	392, 1481
Hsp92II	CATG	2 cut(s)	1436, 1537
HspAI	GCGC	4 cut(s)	566, 752, 828, 1481
KasI	GGCGCC	1 cut(s)	1480
KflI	GGGWCCC	1 cut(s)	1400
Kzo9I	GATC	5 cut(s)	56, 257, 459, 1033, 1440
LmnI	GCTCC	8 cut(s)	268, 802, 856, 881, 1172, 1213, 1221, 1597
LweI	GCATC	1 cut(s)	1617
MaeI	CTAG	2 cut(s)	177, 183
MaeII	ACGT	3 cut(s)	392, 591, 1178
MaeIII	GTNAC	1 cut(s)	1415
MalI	GATC	5 cut(s)	58, 259, 461, 1035, 1442
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	5 cut(s)	56, 257, 459, 1033, 1440
MboII	GAAGA	8 cut(s)	289, 358, 432, 717, 928, 1064, 1380, 1512
MfeI	CAATTG	1 cut(s)	912
MflI	RGATCY	2 cut(s)	257, 1033
MhlI	GDGCHC	4 cut(s)	675, 1191, 1218, 1602
MluCI	AATT	7 cut(s)	95, 581, 705, 880, 912, 1068, 1639
Mly113I	GGCGCC	1 cut(s)	1481
MlyI	GAGTC	6 cut(s)	245, 463, 896, 902, 1324, 1342
MmeI	TCCRAC	1 cut(s)	755
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	1122
MspA1I	CMGCKG	5 cut(s)	51, 200, 404, 846, 1287
MspI	CCGG	9 cut(s)	495, 556, 601, 616, 998, 1530, 1548, 1560, 1574
MspR9I	CCNGG	3 cut(s)	541, 1438, 1586
MunI	CAATTG	1 cut(s)	912
MvaI	CCWGG	3 cut(s)	541, 1438, 1586
MvnI	CGCG	4 cut(s)	552, 566, 752, 770
NarI	GGCGCC	1 cut(s)	1481
NdeII	GATC	5 cut(s)	56, 257, 459, 1033, 1440
NlaIII	CATG	2 cut(s)	1436, 1537
PaeR7I	CTCGAG	1 cut(s)	471
PasI	CCCWGGG	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	5 cut(s)	672, 675, 767, 1343, 1449
PfeI	GAWTC	6 cut(s)	118, 145, 865, 1539, 1554, 1581
PflFI	GACNNNGTC	2 cut(s)	394, 1333
PflMI	CCANNNNNTGG	1 cut(s)	1234
PleI	GAGTC	6 cut(s)	245, 463, 896, 902, 1324, 1342
PluTI	GGCGCC	1 cut(s)	1484
PmaCI	CACGTG	1 cut(s)	1179
PmlI	CACGTG	1 cut(s)	1179
PpsI	GAGTC	6 cut(s)	245, 463, 896, 902, 1324, 1342
Ppu21I	YACGTR	1 cut(s)	1179
PpuMI	RGGWCCY	2 cut(s)	244, 1400
Psp124BI	GAGCTC	2 cut(s)	675, 1218
Psp5II	RGGWCCY	2 cut(s)	244, 1400
Psp6I	CCWGG	3 cut(s)	539, 1436, 1584
PspCI	CACGTG	1 cut(s)	1179
PspFI	CCCAGC	2 cut(s)	104, 620
PspGI	CCWGG	3 cut(s)	539, 1436, 1584
PspPI	GGNCC	9 cut(s)	244, 489, 505, 536, 544, 598, 618, 1400, 1462
PspPPI	RGGWCCY	2 cut(s)	244, 1400
PspXI	VCTCGAGB	1 cut(s)	471
PstI	CTGCAG	2 cut(s)	26, 1356
PstNI	CAGNNNCTG	1 cut(s)	1234
PsuI	RGATCY	2 cut(s)	257, 1033
PsyI	GACNNNGTC	2 cut(s)	394, 1333
PvuII	CAGCTG	1 cut(s)	51
RsaI	GTAC	2 cut(s)	187, 288
RsaNI	GTAC	2 cut(s)	186, 287
RseI	CAYNNNNRTG	1 cut(s)	1122
SacI	GAGCTC	2 cut(s)	675, 1218
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	5 cut(s)	56, 257, 459, 1033, 1440
Sau96I	GGNCC	9 cut(s)	244, 489, 505, 536, 544, 598, 618, 1400, 1462
ScaI	AGTACT	1 cut(s)	187
SchI	GAGTC	6 cut(s)	245, 463, 896, 902, 1324, 1342
ScrFI	CCNGG	3 cut(s)	541, 1438, 1586
SduI	GDGCHC	4 cut(s)	675, 1191, 1218, 1602
SfaNI	GCATC	1 cut(s)	1617
SfcI	CTRYAG	2 cut(s)	22, 1352
SfoI	GGCGCC	1 cut(s)	1482
Sfr274I	CTCGAG	1 cut(s)	471
SinI	GGWCC	6 cut(s)	244, 505, 544, 598, 1400, 1462
SlaI	CTCGAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	1122
SmlI	CTYRAG	2 cut(s)	262, 471
SmoI	CTYRAG	2 cut(s)	262, 471
Sse9I	AATT	7 cut(s)	95, 581, 705, 880, 912, 1068, 1639
SspDI	GGCGCC	1 cut(s)	1480
SspMI	CTAG	2 cut(s)	177, 183
SstI	GAGCTC	2 cut(s)	675, 1218
StyD4I	CCNGG	3 cut(s)	539, 1436, 1584
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	4 cut(s)	211, 736, 1044, 1518
TaiI	ACGT	3 cut(s)	395, 594, 1181
TaqI	TCGA	9 cut(s)	334, 412, 472, 633, 666, 675, 785, 896, 1443
TasI	AATT	7 cut(s)	95, 581, 705, 880, 912, 1068, 1639
TatI	WGTACW	1 cut(s)	185
TfiI	GAWTC	6 cut(s)	118, 145, 865, 1539, 1554, 1581
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	1421
TspGWI	ACGGA	1 cut(s)	767
Tth111I	GACNNNGTC	2 cut(s)	394, 1333
Van91I	CCANNNNNTGG	1 cut(s)	1234
VpaK11BI	GGWCC	6 cut(s)	244, 505, 544, 598, 1400, 1462
XcmI	CCANNNNNNNNNTGG	2 cut(s)	460, 1531
XhoI	CTCGAG	1 cut(s)	471
XspI	CTAG	2 cut(s)	177, 183
ZraI	GACGTC	1 cut(s)	393
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.