Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

30505396 .. 30515975

Gene Structure 10580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGGCAATTCGGAACGTTCGAGTTGGTGGATCTCTCGATCTCAACTTTGGATCCACTAGTCCTACCGATGATGGTGGGTCCATTGATCTAAACTTTGGTTCCATCGGTTCCACTGGTGCCGATGGATCAATCGATCTAGCTTTTGGCGTCGTCGTCGGACAGGCACGAGGGGACCTAGTGTCGATCAAGAGTGACAGAGTGGAGGTTCTAATGGTGGAGGATTGCGGCTGCTCGATGAGGGCCGGTGTTTCGAGTGCGGAGCGTAGATCGTCGTGGCCGGATCGAATCAATTGGATCCGATTTGGTTTCGGCGGCTTCACCGCACACTCCGAGTTCATCTCCGCCGCCGTCGCCAATGACTTGACCACAACAACCTCCACCACCGCACAACAACGTCATCCTCAATCTGCTTCTCGATTGGGTTTGGGGATAAGGACTGCTTCTTCCTCCACCGCTAGCGAAATCGTGGAGGCTCAAGGCCACATTCTAAGGGCCACCGGTCGGAAGGACAGCCACGGCAAGGTTTGCACCACCAAAGGCCCCGGGGATCGCGGTATCGGGCTCGTCGCCCATACCGCCATTCAATTCTACGACATGCGGGACCGGCTTGGATACGACCAGCCTAGCAAGGTCGTCGATTGGCCGCGTAGGACACGCGAACGTGAGCCTCAATTTCTCGATGGTGGAGGCTTCGAGTCCTTTGTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

237

Amino Acids

25.36

Weight (kDa)

6.97

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	168 - 215	8.8e-14	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	3 cut(s)	555, 649, 660
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	8 cut(s)	40, 48, 61, 136, 291, 292, 305, 558
AcoI	YGGCCR	2 cut(s)	278, 644
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	504, 523
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	1 cut(s)	587
AhdI	GACNNNNNGTC	1 cut(s)	181
AhlI	ACTAGT	1 cut(s)	59
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
AlwI	GGATC	8 cut(s)	40, 48, 61, 136, 291, 292, 305, 558
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	6 cut(s)	243, 278, 481, 495, 541, 644
ApeKI	GCWGC	1 cut(s)	231
AsiGI	ACCGGT	1 cut(s)	500
AspS9I	GGNCC	6 cut(s)	81, 175, 243, 495, 542, 604
AsuC2I	CCSGG	2 cut(s)	546, 547
AsuHPI	GGTGA	1 cut(s)	313
AsuNHI	GCTAGC	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	545
AvaII	GGWCC	3 cut(s)	81, 175, 604
BamHI	GGATCC	2 cut(s)	53, 297
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	567
BauI	CACGAG	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	4 cut(s)	68, 113, 119, 677
BceAI	ACGGC	2 cut(s)	335, 535
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciVI	GTATCC	1 cut(s)	608
BcnI	CCSGG	2 cut(s)	546, 547
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	5 cut(s)	60, 140, 179, 459, 627
BfuI	GTATCC	1 cut(s)	608
BisI	GCNGC	5 cut(s)	229, 232, 316, 348, 647
BlsI	GCNGC	5 cut(s)	230, 233, 317, 349, 648
Bme1390I	CCNGG	2 cut(s)	546, 547
Bme18I	GGWCC	3 cut(s)	81, 175, 604
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	545
BmgT120I	GGNCC	6 cut(s)	81, 175, 243, 495, 542, 604
BmiI	GGNNCC	9 cut(s)	55, 82, 103, 112, 121, 176, 299, 544, 605
BmrFI	CCNGG	2 cut(s)	546, 547
BmtI	GCTAGC	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpuEI	CTTGAG	1 cut(s)	462
BpuMI	CCSGG	2 cut(s)	546, 547
Bsa29I	ATCGAT	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	517, 544, 545, 546
BsaWI	WCCGGW	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	2 cut(s)	504, 523
Bse118I	RCCGGY	3 cut(s)	245, 500, 606
Bse1I	ACTGG	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	4 cut(s)	517, 544, 545, 546
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	504, 523
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	218
Bsh1236I	CGCG	3 cut(s)	555, 649, 660
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	6 cut(s)	245, 280, 483, 497, 543, 646
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	500
BshVI	ATCGAT	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	5 cut(s)	246, 281, 501, 546, 607
BslFI	GGGAC	2 cut(s)	188, 617
BslI	CCNNNNNNNGG	2 cut(s)	504, 523
BsmFI	GGGAC	2 cut(s)	188, 617
BsnI	GGCC	6 cut(s)	245, 280, 483, 497, 543, 646
BsoBI	CYCGRG	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	567
BspANI	GGCC	6 cut(s)	245, 280, 483, 497, 543, 646
BspDI	ATCGAT	1 cut(s)	135
BspFNI	CGCG	3 cut(s)	555, 649, 660
BspLI	GGNNCC	9 cut(s)	55, 82, 103, 112, 121, 176, 299, 544, 605
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	8 cut(s)	40, 48, 61, 136, 291, 292, 305, 558
BspT107I	GGYRCC	1 cut(s)	119
BsrFI	RCCGGY	3 cut(s)	245, 500, 606
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	3 cut(s)	245, 500, 606
BssECI	CCNNGG	4 cut(s)	517, 544, 545, 546
BssNI	GRCGYC	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	491
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	3 cut(s)	555, 649, 660
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	4 cut(s)	353, 528, 578, 607
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	2 cut(s)	544, 545
BstUI	CGCG	3 cut(s)	555, 649, 660
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	3 cut(s)	32, 53, 297
BstYI	RGATCY	3 cut(s)	32, 53, 297
Bsu15I	ATCGAT	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	6 cut(s)	245, 280, 483, 497, 543, 646
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	460
Cfr10I	RCCGGY	3 cut(s)	245, 500, 606
Cfr13I	GGNCC	6 cut(s)	81, 175, 243, 495, 542, 604
Cfr9I	CCCGGG	1 cut(s)	545
ClaI	ATCGAT	1 cut(s)	135
CseI	GACGC	1 cut(s)	139
CspAI	ACCGGT	1 cut(s)	500
CviAII	CATG	1 cut(s)	598
DdeI	CTNAG	1 cut(s)	491
DriI	GACNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	2 cut(s)	278, 644
Eam1105I	GACNNNNNGTC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	3 cut(s)	81, 175, 604
Eco88I	CYCGRG	1 cut(s)	545
EcoO109I	RGGNCCY	2 cut(s)	175, 542
EcoT38I	GRGCYC	1 cut(s)	567
FaeI	CATG	1 cut(s)	601
FaiI	YATR	2 cut(s)	576, 599
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	2 cut(s)	188, 617
FatI	CATG	1 cut(s)	597
FauI	CCCGC	1 cut(s)	594
Fnu4HI	GCNGC	5 cut(s)	229, 232, 316, 348, 647
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	5 cut(s)	229, 232, 316, 348, 647
FspBI	CTAG	5 cut(s)	60, 140, 179, 459, 627
GluI	GCNGC	5 cut(s)	229, 232, 316, 348, 647
HaeIII	GGCC	6 cut(s)	245, 280, 483, 497, 543, 646
HapII	CCGG	5 cut(s)	246, 281, 501, 546, 607
HgaI	GACGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	601
HinfI	GANTC	2 cut(s)	288, 698
HpaII	CCGG	5 cut(s)	246, 281, 501, 546, 607
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	5 cut(s)	15, 161, 302, 334, 507
Hpy188III	TCNNGA	4 cut(s)	38, 190, 417, 680
Hpy8I	GTNNAC	1 cut(s)	709
Hpy99I	CGWCG	7 cut(s)	155, 158, 161, 277, 356, 572, 641
HpyAV	CCTTC	1 cut(s)	502
HpyCH4IV	ACGT	3 cut(s)	18, 397, 664
HpyCH4V	TGCA	1 cut(s)	531
HpyF10VI	GCNNNNNNNGC	4 cut(s)	353, 528, 578, 607
HpyF3I	CTNAG	1 cut(s)	491
HpySE526I	ACGT	3 cut(s)	18, 397, 664
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	601
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	102, 149, 259, 294, 514, 559, 620, 635
Lsp1109I	GCAGC	1 cut(s)	218
MaeI	CTAG	5 cut(s)	60, 140, 179, 459, 627
MaeII	ACGT	3 cut(s)	18, 397, 664
MaeIII	GTNAC	1 cut(s)	194
MboII	GAAGA	1 cut(s)	438
MfeI	CAATTG	1 cut(s)	292
MflI	RGATCY	3 cut(s)	32, 53, 297
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	4 cut(s)	9, 292, 587, 674
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	2 cut(s)	139, 485
MspI	CCGG	5 cut(s)	246, 281, 501, 546, 607
MspR9I	CCNGG	2 cut(s)	546, 547
MunI	CAATTG	1 cut(s)	292
MvnI	CGCG	3 cut(s)	555, 649, 660
MwoI	GCNNNNNNNGC	4 cut(s)	353, 528, 578, 607
NciI	CCSGG	2 cut(s)	546, 547
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	1 cut(s)	601
NlaIV	GGNNCC	9 cut(s)	55, 82, 103, 112, 121, 176, 299, 544, 605
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	601
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	288
PinAI	ACCGGT	1 cut(s)	500
PkrI	GCNGC	5 cut(s)	230, 233, 317, 349, 648
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PpuMI	RGGWCCY	1 cut(s)	175
Psp1406I	AACGTT	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	175
PspN4I	GGNNCC	9 cut(s)	55, 82, 103, 112, 121, 176, 299, 544, 605
PspPI	GGNCC	6 cut(s)	81, 175, 243, 495, 542, 604
PspPPI	RGGWCCY	1 cut(s)	175
PsuI	RGATCY	3 cut(s)	32, 53, 297
SatI	GCNGC	5 cut(s)	229, 232, 316, 348, 647
Sau96I	GGNCC	6 cut(s)	81, 175, 243, 495, 542, 604
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	2 cut(s)	546, 547
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	9 cut(s)	21, 145, 180, 210, 380, 400, 528, 636, 667
SinI	GGWCC	3 cut(s)	81, 175, 604
SmaI	CCCGGG	1 cut(s)	547
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	4 cut(s)	9, 292, 587, 674
SspMI	CTAG	5 cut(s)	60, 140, 179, 459, 627
StyD4I	CCNGG	2 cut(s)	544, 545
TaiI	ACGT	3 cut(s)	21, 400, 667
TasI	AATT	4 cut(s)	9, 292, 587, 674
TauI	GCSGC	4 cut(s)	231, 318, 350, 649
TfiI	GAWTC	1 cut(s)	288
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	17, 328
TspMI	CCCGGG	1 cut(s)	545
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	3 cut(s)	81, 175, 604
XceI	RCATGY	1 cut(s)	601
XmaI	CCCGGG	1 cut(s)	545
XspI	CTAG	5 cut(s)	60, 140, 179, 459, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.