Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

66084615 .. 66085065

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGGGAGAGCCACAACAACCTCCACCACCGCGCAATGACGTCGTCCTCCACCGCTTCTCGATTGGGTTTGGGTATAAGGACTGCTTCTTCCTCCACCACCAGCGAAATCGTGGAGGCTCGAGGCCACATTCTAAGGGCCATTGGCCCGAAGGACCGCCACAAGCAAGACCGGCTCGAATACGACCGACCCGGCAAGGTCGTCGATTGGGTCAGCAAGAAAGCCAAGGCCACAATCGACGAGCTCGACGAGCTACCGCCGTGGAACCCGAACTCAATTTCTGTTCGGACAACATCTTCTCCAATGGTGTCGATATCCGCCGCACAGACATGCGAACACAAGCCTCCATTTCTCGATTGTGGAGGCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

123

Amino Acids

13.4

Weight (kDa)

8.69

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	44
AccII	CGCG	1 cut(s)	33
AciI	CCGC	6 cut(s)	31, 54, 157, 257, 318, 321
AcyI	GRCGYC	1 cut(s)	41
AluBI	AGCT	2 cut(s)	244, 253
AluI	AGCT	2 cut(s)	244, 253
Alw21I	GWGCWC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	4 cut(s)	124, 138, 145, 228
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	138, 146, 154
AsuC2I	CCSGG	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	244
BcgI	CGANNNNNNTGC	4 cut(s)	24, 58, 184, 218
BcnI	CCSGG	1 cut(s)	192
BfaI	CTAG	1 cut(s)	370
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	3 cut(s)	138, 146, 154
BmiI	GGNNCC	2 cut(s)	266, 367
BmrFI	CCNGG	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	225, 260
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bse118I	RCCGGY	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	225, 260
BseMI	GCAATG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	4 cut(s)	126, 140, 147, 230
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	172, 192
BsnI	GGCC	4 cut(s)	126, 140, 147, 230
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	246
BspACI	CCGC	6 cut(s)	31, 54, 157, 257, 318, 321
BspANI	GGCC	4 cut(s)	126, 140, 147, 230
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	266, 367
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	225, 260
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	260
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	35
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 250
BstNSI	RCATGY	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	190
BstUI	CGCG	1 cut(s)	33
BsuRI	GGCC	4 cut(s)	126, 140, 147, 230
BtgI	CCRYGG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	138, 146, 154
CviAII	CATG	1 cut(s)	330
DdeI	CTNAG	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	333
FaiI	YATR	2 cut(s)	77, 331
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	370
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	4 cut(s)	126, 140, 147, 230
HapII	CCGG	2 cut(s)	172, 192
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	333
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HpaII	CCGG	2 cut(s)	172, 192
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	2 cut(s)	60, 353
Hpy99I	CGWCG	4 cut(s)	46, 206, 242, 251
HpyAV	CCTTC	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 250
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	333
HspAI	GCGC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	3 cut(s)	115, 185, 205
MaeI	CTAG	1 cut(s)	370
MaeII	ACGT	1 cut(s)	41
MboII	GAAGA	2 cut(s)	81, 288
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	276
MnlI	CCTC	7 cut(s)	32, 58, 103, 109, 116, 354, 356
MslI	CAYNNNNRTG	1 cut(s)	328
MspI	CCGG	2 cut(s)	172, 192
MspR9I	CCNGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	172, 250
NciI	CCSGG	1 cut(s)	192
NlaIII	CATG	1 cut(s)	333
NlaIV	GGNNCC	2 cut(s)	266, 367
NspI	RCATGY	1 cut(s)	333
PaeR7I	CTCGAG	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 246
PflFI	GACNNNGTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	266, 367
PspPI	GGNCC	3 cut(s)	138, 146, 154
PspXI	VCTCGAGB	1 cut(s)	120
PsyI	GACNNNGTC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	246
SatI	GCNGC	1 cut(s)	321
Sau96I	GGNCC	3 cut(s)	138, 146, 154
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	5 cut(s)	24, 44, 201, 246, 255
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	6 cut(s)	31, 54, 157, 257, 318, 321
SspMI	CTAG	1 cut(s)	370
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	225
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	8 cut(s)	61, 121, 177, 204, 237, 246, 311, 354
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	276
TauI	GCSGC	1 cut(s)	323
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	154
XceI	RCATGY	1 cut(s)	333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	1 cut(s)	370
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.