Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8175406.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

34 .. 659

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8175406.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgggggagagccacaacaacctccaccaccgcgcaatgacagaggctcgaggccacattctaagggccaccggccggaaggacagccacaacaaggtctgcattgccaaaggccccagggaccaccacgtccggctcgccgcccacaccgccattcaattctactacgtacaaaaccggctcagatacgacctgcctagcatggccgtcgattgtctcatcaagaaagccaaggccgcaatggaagagctgccgccgtggaacccgaactcaatttttgttcagacaacatcttctccgacggcaaggcgcaatggtggacagcagcggagtggcggagctggtgaatcagaacagctcgaattttctgcaggtgaggatggtgtggaggccgaagttaatgttaatctttgtctgcctacaattgcctctgatctaagttgggctagaggccgaagttgtcggctagacagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

158

Amino Acids

17.45

Weight (kDa)

8.78

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc36I	ACCTGC	2 cut(s)	201, 362
AccII	CGCG	1 cut(s)	33
AciI	CCGC	7 cut(s)	31, 141, 150, 237, 254, 328, 336
AcoI	YGGCCR	2 cut(s)	73, 204
AcsI	RAATTY	1 cut(s)	362
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	2 cut(s)	75, 94
AgsI	TTSAA	1 cut(s)	158
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	3 cut(s)	250, 341, 358
AluI	AGCT	3 cut(s)	250, 341, 358
Alw26I	GTCTC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	8 cut(s)	52, 66, 73, 112, 204, 234, 390, 451
ApeKI	GCWGC	2 cut(s)	250, 325
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	35, 312
AspS9I	GGNCC	3 cut(s)	66, 113, 121
AsuHPI	GGTGA	2 cut(s)	356, 386
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	237, 337
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	3 cut(s)	191, 241, 318
BcgI	CGANNNNNNTGC	4 cut(s)	190, 224, 350, 384
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	3 cut(s)	198, 447, 467
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	2 cut(s)	201, 362
BisI	GCNGC	5 cut(s)	141, 237, 251, 254, 326
BlsI	GCNGC	5 cut(s)	142, 238, 252, 255, 327
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	48
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	66, 113, 121
BmiI	GGNNCC	3 cut(s)	115, 122, 263
BmrFI	CCNGG	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	4 cut(s)	116, 117, 231, 257
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 94
Bse118I	RCCGGY	2 cut(s)	71, 177
Bse3DI	GCAATG	4 cut(s)	42, 102, 246, 319
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	4 cut(s)	116, 117, 231, 257
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	75, 94
BseMI	GCAATG	4 cut(s)	42, 102, 246, 319
BseMII	CTCAG	1 cut(s)	196
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	237, 337
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	8 cut(s)	54, 68, 75, 114, 206, 236, 392, 453
BsiEI	CGRYCG	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	4 cut(s)	72, 76, 133, 178
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	75, 94
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	8 cut(s)	54, 68, 75, 114, 206, 236, 392, 453
BsoBI	CYCGRG	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	7 cut(s)	31, 141, 150, 237, 254, 328, 336
BspANI	GGCC	8 cut(s)	54, 68, 75, 114, 206, 236, 392, 453
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	115, 122, 263
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	2 cut(s)	201, 362
BspQI	GCTCTTC	1 cut(s)	240
BsrDI	GCAATG	4 cut(s)	42, 102, 246, 319
BsrFI	RCCGGY	2 cut(s)	71, 177
BssAI	RCCGGY	2 cut(s)	71, 177
BssECI	CCNNGG	4 cut(s)	116, 117, 231, 257
BssMI	GATC	1 cut(s)	433
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	62, 182, 437
BstDSI	CCRYGG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	35, 312
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	433
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 236
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	369
BstSNI	TACGTA	1 cut(s)	169
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	237, 337
BstZI	CGGCCG	1 cut(s)	73
BsuRI	GGCC	8 cut(s)	54, 68, 75, 114, 206, 236, 392, 453
BtgI	CCRYGG	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	385
BveI	ACCTGC	2 cut(s)	201, 362
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	2 cut(s)	35, 312
Cfr10I	RCCGGY	2 cut(s)	71, 177
Cfr13I	GGNCC	3 cut(s)	66, 113, 121
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	1 cut(s)	202
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	3 cut(s)	62, 182, 437
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	2 cut(s)	73, 204
EagI	CGGCCG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	351
EclXI	CGGCCG	1 cut(s)	73
Eco105I	TACGTA	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	121
Eco52I	CGGCCG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	48
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	205
FaiI	YATR	1 cut(s)	203
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	141, 237, 251, 254, 326
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	5 cut(s)	141, 237, 251, 254, 326
FspBI	CTAG	3 cut(s)	198, 447, 467
GlaI	GCGC	2 cut(s)	34, 311
GluI	GCNGC	5 cut(s)	141, 237, 251, 254, 326
HaeIII	GGCC	8 cut(s)	54, 68, 75, 114, 206, 236, 392, 453
HapII	CCGG	4 cut(s)	72, 76, 133, 178
HhaI	GCGC	2 cut(s)	35, 312
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	2 cut(s)	33, 310
HinP1I	GCGC	2 cut(s)	33, 310
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	4 cut(s)	72, 76, 133, 178
HphI	GGTGA	2 cut(s)	356, 386
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	5 cut(s)	185, 285, 300, 352, 433
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	2 cut(s)	212, 304
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	2 cut(s)	129, 168
HpyCH4V	TGCA	2 cut(s)	102, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 236
HpyF3I	CTNAG	3 cut(s)	62, 182, 437
HpySE526I	ACGT	2 cut(s)	129, 168
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	2 cut(s)	33, 310
Kzo9I	GATC	1 cut(s)	433
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	9 cut(s)	85, 89, 103, 130, 146, 191, 206, 327, 357
Lsp1109I	GCAGC	2 cut(s)	237, 337
MaeI	CTAG	3 cut(s)	198, 447, 467
MaeII	ACGT	2 cut(s)	129, 168
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	2 cut(s)	257, 285
MfeI	CAATTG	1 cut(s)	423
MluCI	AATT	4 cut(s)	158, 273, 362, 423
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	32, 37, 44, 370, 382, 439, 443
MseI	TTAA	2 cut(s)	399, 405
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	4 cut(s)	72, 76, 133, 178
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	149, 236
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	3 cut(s)	115, 122, 263
PaeR7I	CTCGAG	1 cut(s)	48
PaqCI	CACCTGC	1 cut(s)	362
PasI	CCCWGGG	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	142, 238, 252, 255, 327
Ppu21I	YACGTR	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	115, 122, 263
PspPI	GGNCC	3 cut(s)	66, 113, 121
PspXI	VCTCGAGB	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	399, 405
SatI	GCNGC	5 cut(s)	141, 237, 251, 254, 326
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	3 cut(s)	66, 113, 121
ScrFI	CCNGG	1 cut(s)	118
SetI	ASST	9 cut(s)	24, 99, 132, 171, 195, 252, 343, 360, 376
SfcI	CTRYAG	1 cut(s)	369
Sfr274I	CTCGAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	121
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
SnaBI	TACGTA	1 cut(s)	169
Sse9I	AATT	4 cut(s)	158, 273, 362, 423
SsiI	CCGC	7 cut(s)	31, 141, 150, 237, 254, 328, 336
SspMI	CTAG	3 cut(s)	198, 447, 467
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	2 cut(s)	132, 171
TaqI	TCGA	3 cut(s)	49, 210, 360
TasI	AATT	4 cut(s)	158, 273, 362, 423
TauI	GCSGC	3 cut(s)	143, 239, 256
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	399, 405
Tru9I	TTAA	2 cut(s)	399, 405
TseI	GCWGC	2 cut(s)	250, 325
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	48
XspI	CTAG	3 cut(s)	198, 447, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.