Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008698.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

20527 .. 21686

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008698.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgagttctatatctcggtactcattatatgcttccttgtgccctcaggcagagaccattgtgaggtcgaagatggcttggatttacggccagcagaggaatgtctcggctcagttgctgcgtctctttttccatgactgcttcattgagattcaaatcctcttgctcgtccgattcctaccgccgatcgccgatcaaacaccgccactgcgtctcaatccaccttcatgcaccatagatgtttctggttcccccaacttcaaatcctatagcaaattgaaattgtgcattaaggcttcaccgctcactccgagttcatcctcgccgactgcttcttcctccaccgctagcgaaatcgtggaggctcaatgccacattctaagggccaccgaccggaaggaccgccacagcaaggtttgcaccaccaaaggccccagggaccgcagcatccggctcgtcgcccacaccgccattcaattctatgacatgcaggaccggcttggatacgaccagcctagcaaggtcgtcgattggctaatcaagaaagccaaggccgcaataaatgagcttgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

191

Amino Acids

21.43

Weight (kDa)

9.41

Isoelectric Point (pI)

59.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	304
AciI	CCGC	8 cut(s)	182, 203, 302, 345, 403, 442, 468, 555
AcoI	YGGCCR	1 cut(s)	88
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	63, 393, 412
AgsI	TTSAA	4 cut(s)	155, 262, 280, 476
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	1 cut(s)	568
AluI	AGCT	1 cut(s)	568
Alw26I	GTCTC	4 cut(s)	47, 109, 128, 218
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	4 cut(s)	88, 384, 430, 552
ApeKI	GCWGC	2 cut(s)	118, 444
AspS9I	GGNCC	5 cut(s)	384, 400, 431, 439, 493
AsuHPI	GGTGA	1 cut(s)	291
AsuNHI	GCTAGC	1 cut(s)	347
AvaII	GGWCC	3 cut(s)	400, 439, 493
AxyI	CCTNAGG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	105, 456
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	4 cut(s)	436, 470, 508, 542
BciT130I	CCWGG	1 cut(s)	436
BciVI	GTATCC	1 cut(s)	497
BcoDI	GTCTC	4 cut(s)	47, 109, 128, 218
BfaI	CTAG	3 cut(s)	348, 516, 574
BfmI	CTRYAG	1 cut(s)	268
BfuI	GTATCC	1 cut(s)	497
BisI	GCNGC	3 cut(s)	119, 445, 555
BlsI	GCNGC	3 cut(s)	120, 446, 556
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	3 cut(s)	400, 439, 493
BmgT120I	GGNCC	5 cut(s)	384, 400, 431, 439, 493
BmiI	GGNNCC	3 cut(s)	250, 433, 440
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	1 cut(s)	456
BmtI	GCTAGC	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	434, 435, 549
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 393, 412
Bse118I	RCCGGY	1 cut(s)	495
Bse21I	CCTNAGG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	434, 435, 549
BseGI	GGATG	2 cut(s)	317, 447
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	3 cut(s)	63, 393, 412
BseMII	CTCAG	2 cut(s)	59, 125
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	105, 456
Bsh1285I	CGRYCG	2 cut(s)	189, 394
BshFI	GGCC	4 cut(s)	90, 386, 432, 554
BsiEI	CGRYCG	2 cut(s)	189, 394
BsiSI	CCGG	3 cut(s)	394, 451, 496
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	3 cut(s)	63, 393, 412
BsmAI	GTCTC	4 cut(s)	47, 109, 128, 218
BsmBI	CGTCTC	2 cut(s)	128, 218
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	4 cut(s)	90, 386, 432, 554
Bso31I	GGTCTC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	186, 193
BspACI	CCGC	8 cut(s)	182, 203, 302, 345, 403, 442, 468, 555
BspANI	GGCC	4 cut(s)	90, 386, 432, 554
BspCNI	CTCAG	2 cut(s)	58, 124
BspLI	GGNNCC	3 cut(s)	250, 433, 440
BspOI	GCTAGC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	495
BssECI	CCNNGG	3 cut(s)	434, 435, 549
BssMI	GATC	2 cut(s)	186, 193
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	92, 349
BstDEI	CTNAG	3 cut(s)	45, 111, 380
BstF5I	GGATG	2 cut(s)	317, 447
BstKTI	GATC	2 cut(s)	189, 196
BstMAI	GTCTC	4 cut(s)	47, 109, 128, 218
BstMBI	GATC	2 cut(s)	186, 193
BstMCI	CGRYCG	2 cut(s)	189, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	417, 467, 496, 554
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	105, 456
Bsu36I	CCTNAGG	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	4 cut(s)	90, 386, 432, 554
BtsCI	GGATG	2 cut(s)	317, 447
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	92, 349
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr10I	RCCGGY	1 cut(s)	495
Cfr13I	GGNCC	5 cut(s)	384, 400, 431, 439, 493
CseI	GACGC	2 cut(s)	110, 200
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	134, 228, 487
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	3 cut(s)	45, 111, 380
DpnI	GATC	2 cut(s)	188, 195
DpnII	GATC	2 cut(s)	186, 193
EaeI	YGGCCR	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	47
Eco47I	GGWCC	3 cut(s)	400, 439, 493
Eco81I	CCTNAGG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
Esp3I	CGTCTC	2 cut(s)	128, 218
FaeI	CATG	3 cut(s)	137, 231, 490
FaiI	YATR	9 cut(s)	11, 28, 30, 135, 229, 236, 270, 483, 488
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	3 cut(s)	133, 227, 486
Fnu4HI	GCNGC	3 cut(s)	119, 445, 555
FokI	GGATG	2 cut(s)	304, 434
Fsp4HI	GCNGC	3 cut(s)	119, 445, 555
FspBI	CTAG	3 cut(s)	348, 516, 574
GluI	GCNGC	3 cut(s)	119, 445, 555
HaeIII	GGCC	4 cut(s)	90, 386, 432, 554
HapII	CCGG	3 cut(s)	394, 451, 496
HgaI	GACGC	2 cut(s)	110, 200
Hin1II	CATG	3 cut(s)	137, 231, 490
HinfI	GANTC	2 cut(s)	151, 174
HpaII	CCGG	3 cut(s)	394, 451, 496
HphI	GGTGA	1 cut(s)	291
Hpy188I	TCNGA	2 cut(s)	173, 312
Hpy188III	TCNNGA	1 cut(s)	541
Hpy99I	CGWCG	2 cut(s)	461, 530
HpyAV	CCTTC	2 cut(s)	234, 391
HpyCH4V	TGCA	4 cut(s)	231, 288, 420, 490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	417, 467, 496, 554
HpyF3I	CTNAG	3 cut(s)	45, 111, 380
Hsp92II	CATG	3 cut(s)	137, 231, 490
Kzo9I	GATC	2 cut(s)	186, 193
Lsp1109I	GCAGC	2 cut(s)	105, 456
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	3 cut(s)	348, 516, 574
MalI	GATC	2 cut(s)	188, 195
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	2 cut(s)	186, 193
MboII	GAAGA	2 cut(s)	82, 327
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	3 cut(s)	275, 281, 476
MnlI	CCTC	7 cut(s)	54, 57, 90, 170, 331, 349, 355
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	226
MspI	CCGG	3 cut(s)	394, 451, 496
MspR9I	CCNGG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	4 cut(s)	417, 467, 496, 554
NdeII	GATC	2 cut(s)	186, 193
NheI	GCTAGC	1 cut(s)	347
NlaIII	CATG	3 cut(s)	137, 231, 490
NlaIV	GGNNCC	3 cut(s)	250, 433, 440
NmeAIII	GCCGAG	1 cut(s)	86
NspI	RCATGY	1 cut(s)	490
PasI	CCCWGGG	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	151, 174
PkrI	GCNGC	3 cut(s)	120, 446, 556
Ple19I	CGATCG	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	3 cut(s)	250, 433, 440
PspPI	GGNCC	5 cut(s)	384, 400, 431, 439, 493
PstNI	CAGNNNCTG	1 cut(s)	118
PvuI	CGATCG	1 cut(s)	189
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	119, 445, 555
Sau3AI	GATC	2 cut(s)	186, 193
Sau96I	GGNCC	5 cut(s)	384, 400, 431, 439, 493
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	5 cut(s)	68, 226, 417, 525, 570
SfaNI	GCATC	1 cut(s)	456
SfcI	CTRYAG	1 cut(s)	268
SinI	GGWCC	3 cut(s)	400, 439, 493
SmiMI	CAYNNNNRTG	1 cut(s)	226
Sse9I	AATT	3 cut(s)	275, 281, 476
SsiI	CCGC	8 cut(s)	182, 203, 302, 345, 403, 442, 468, 555
SspMI	CTAG	3 cut(s)	348, 516, 574
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	549
TaqI	TCGA	2 cut(s)	68, 528
TasI	AATT	3 cut(s)	275, 281, 476
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	2 cut(s)	151, 174
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	2 cut(s)	118, 444
TspDTI	ATGAA	3 cut(s)	133, 216, 306
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	3 cut(s)	400, 439, 493
XceI	RCATGY	1 cut(s)	490
XspI	CTAG	3 cut(s)	348, 516, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.