pycom11g22850
TCP Family

Transcription factor TCP4-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
25878749 .. 25879603
855 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22850.1

Sequence Viewer

Length: 855 bp
ATGGGGGATTCTCACCACCATCAAGCAACGACGTCGTCTCGCCTGGGGATAAGGCCGCCGTCCTCGGGCGGAGGAGTAGTCAGCACCGACATCGTGGAGGTGGTACGAGGCAGCCACATTGTCCGGGCGACGGGCCGGAAAGACAGGCACAGCAAGGTCTGCACGGCTAAAGGCCCGAGGGACCGCCGCGTCCGGCTCGCCGCTCACACCGCCATTCAATTCTACGACGTCCAGGACCGGCTCGGCTACGACCGACCCAGCAAGGCCGTCGATTGGCTAATCAAGAAGGCCAAGGCCGCCATAGACGAGCTAGACGAGCTTCCCTCATGGAACCTATATTCGACTTCAACCACCGCGTCGGTTCCGGGCGTGGAGACCCACAATCCGACCACGACCGGCATCCACTGCTTCACGGGAGTGGACGCAATTGGGTCTGCTAATCGAAGGACAACAATGGTGGGGAGTGGAGTTTCGGAACAGCAAATTGGTCAGAACCCAAATAGCAACTTGACTTTCCTCCCACCGTCGCTCGACTCGGACGCCATTGCAGACACCATAAAGTCCTTTTTCCCAACGGGTGCTTCCGCAATCGCAGCTGCAGCCGAGGCTCCGTCGTCGACGATACAGTTTCATCAGAACTACCCACCTGATTTACTCTCCAGAACCAGCAGCCAGAGCCAAGATCGCGCCTCTCTCTGCAATCCTTCCAAGACCCAATTCTCCTCCACCAGCACCACGCTCATACCCATCAAAACGAGCAATCCCTTTTCTCCGGATCCCAAAACCCGCTCGGTTTTGATGGGTCCTCCGCCGCGTGGGCAGAGCATCAGCACAACCAGCAGCAGCAAGAGATGA

Protein Analysis

285

Amino Acids

30.32

Weight (kDa)

9.6

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 45 - 109 1.8e-30 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca FvH4_3g08160 FvH4_3g18740
malus_domestica MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis pycom03g18430 pycom11g22850
rosa_chinensis RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AatII GACGTC 2 cut(s) 35, 231
AccBSI CCGCTC 2 cut(s) 203, 789
AccI GTMKAC 1 cut(s) 617
AccII CGCG 4 cut(s) 189, 356, 687, 814
AccIII TCCGGA 1 cut(s) 772
AclWI GGATC 2 cut(s) 770, 783
AcyI GRCGYC 3 cut(s) 32, 228, 540
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 4 cut(s) 65, 130, 273, 815
AgsI TTSAA 2 cut(s) 218, 348
AjnI CCWGG 2 cut(s) 42, 231
AjuI GAANNNNNNNTTGG 6 cut(s) 468, 500, 565, 597, 701, 733
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 3 cut(s) 310, 319, 596
AluI AGCT 3 cut(s) 310, 319, 596
Alw26I GTCTC 2 cut(s) 42, 368
AlwI GGATC 2 cut(s) 770, 783
Ama87I CYCGRG 2 cut(s) 64, 175
Aor13HI TCCGGA 1 cut(s) 772
AoxI GGCC 6 cut(s) 53, 133, 172, 264, 288, 294
ApeKI GCWGC 7 cut(s) 111, 593, 596, 599, 669, 840, 843
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 5 cut(s) 133, 173, 181, 235, 803
AsuC2I CCSGG 2 cut(s) 125, 366
AsuHPI GGTGA 1 cut(s) 5
AvaI CYCGRG 2 cut(s) 64, 175
AvaII GGWCC 3 cut(s) 181, 235, 803
BamHI GGATCC 1 cut(s) 775
BbvI GCAGC 5 cut(s) 123, 583, 605, 611, 681
BccI CCATC 3 cut(s) 27, 755, 793
BceAI ACGGC 3 cut(s) 43, 180, 251
BcgI CGANNNNNNTGC 6 cut(s) 15, 49, 73, 107, 250, 284
BciT130I CCWGG 2 cut(s) 44, 233
BcnI CCSGG 2 cut(s) 125, 366
BcoDI GTCTC 2 cut(s) 42, 368
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 597
BglI GCCNNNNNGGC 1 cut(s) 817
Bme1390I CCNGG 4 cut(s) 44, 125, 233, 366
Bme18I GGWCC 3 cut(s) 181, 235, 803
BmeT110I CYCGRG 2 cut(s) 64, 175
BmgT120I GGNCC 5 cut(s) 133, 173, 181, 235, 803
BmiI GGNNCC 6 cut(s) 182, 332, 363, 609, 777, 804
BmrFI CCNGG 4 cut(s) 44, 125, 233, 366
BmsI GCATC 2 cut(s) 408, 834
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 1 cut(s) 643
BpuMI CCSGG 2 cut(s) 125, 366
BsaHI GRCGYC 3 cut(s) 32, 228, 540
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 5 cut(s) 43, 63, 176, 291, 603
BsaWI WCCGGW 1 cut(s) 772
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 130, 273, 815
Bse118I RCCGGY 2 cut(s) 237, 395
Bse3DI GCAATG 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 772
BseBI CCWGG 2 cut(s) 44, 233
BseDI CCNNGG 5 cut(s) 43, 63, 176, 291, 603
BseGI GGATG 1 cut(s) 399
BseLI CCNNNNNNNGG 4 cut(s) 65, 130, 273, 815
BseMI GCAATG 1 cut(s) 543
BseRI GAGGAG 2 cut(s) 87, 712
BseXI GCAGC 5 cut(s) 123, 583, 605, 611, 681
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 145
Bsh1236I CGCG 4 cut(s) 189, 356, 687, 814
Bsh1285I CGRYCG 2 cut(s) 253, 396
BshFI GGCC 6 cut(s) 55, 135, 174, 266, 290, 296
BsiEI CGRYCG 2 cut(s) 253, 396
BsiHKCI CYCGRG 2 cut(s) 64, 175
BsiSI CCGG 7 cut(s) 124, 136, 193, 238, 365, 396, 773
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 4 cut(s) 65, 130, 273, 815
BsmAI GTCTC 2 cut(s) 42, 368
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 6 cut(s) 55, 135, 174, 266, 290, 296
Bso31I GGTCTC 1 cut(s) 368
BsoBI CYCGRG 2 cut(s) 64, 175
Bsp13I TCCGGA 1 cut(s) 772
Bsp143I GATC 2 cut(s) 682, 775
BspANI GGCC 6 cut(s) 55, 135, 174, 266, 290, 296
BspEI TCCGGA 1 cut(s) 772
BspFNI CGCG 4 cut(s) 189, 356, 687, 814
BspLI GGNNCC 6 cut(s) 182, 332, 363, 609, 777, 804
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 2 cut(s) 770, 783
BspTNI GGTCTC 1 cut(s) 368
BsrBI CCGCTC 2 cut(s) 203, 789
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 2 cut(s) 237, 395
BssAI RCCGGY 2 cut(s) 237, 395
BssECI CCNNGG 5 cut(s) 43, 63, 176, 291, 603
BssMI GATC 2 cut(s) 682, 775
BssNI GRCGYC 3 cut(s) 32, 228, 540
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 44, 233
Bst4CI ACNGT 2 cut(s) 525, 627
BstACI GRCGYC 3 cut(s) 32, 228, 540
BstAPI GCANNNNNTGC 2 cut(s) 159, 405
BstC8I GCNNGC 1 cut(s) 198
BstF5I GGATG 1 cut(s) 399
BstFNI CGCG 4 cut(s) 189, 356, 687, 814
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 2 cut(s) 685, 778
BstMAI GTCTC 2 cut(s) 42, 368
BstMBI GATC 2 cut(s) 682, 775
BstMCI CGRYCG 2 cut(s) 253, 396
BstNI CCWGG 2 cut(s) 44, 233
BstSCI CCNGG 4 cut(s) 42, 123, 231, 364
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 4 cut(s) 189, 356, 687, 814
BstV1I GCAGC 5 cut(s) 123, 583, 605, 611, 681
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BsuRI GGCC 6 cut(s) 55, 135, 174, 266, 290, 296
BtsCI GGATG 1 cut(s) 399
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 1 cut(s) 689
Cfr10I RCCGGY 2 cut(s) 237, 395
Cfr13I GGNCC 5 cut(s) 133, 173, 181, 235, 803
CseI GACGC 4 cut(s) 178, 345, 431, 548
Csp6I GTAC 1 cut(s) 104
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 1 cut(s) 327
CviQI GTAC 1 cut(s) 104
DpnI GATC 2 cut(s) 684, 777
DpnII GATC 2 cut(s) 682, 775
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EciI GGCGGA 2 cut(s) 84, 798
Eco130I CCWWGG 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 368
Eco47I GGWCC 3 cut(s) 181, 235, 803
Eco88I CYCGRG 2 cut(s) 64, 175
EcoO109I RGGNCCY 1 cut(s) 803
EcoRII CCWGG 2 cut(s) 42, 231
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 1 cut(s) 330
FaiI YATR 5 cut(s) 302, 328, 337, 557, 743
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 326
FauI CCCGC 1 cut(s) 794
FblI GTMKAC 1 cut(s) 617
FokI GGATG 1 cut(s) 386
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 688
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 643
HaeIII GGCC 6 cut(s) 55, 135, 174, 266, 290, 296
HapII CCGG 7 cut(s) 124, 136, 193, 238, 365, 396, 773
HgaI GACGC 4 cut(s) 178, 345, 431, 548
HhaI GCGC 1 cut(s) 689
Hin1I GRCGYC 3 cut(s) 32, 228, 540
Hin1II CATG 1 cut(s) 330
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 2 cut(s) 8, 533
HpaII CCGG 7 cut(s) 124, 136, 193, 238, 365, 396, 773
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 421, 618
Hpy188I TCNGA 5 cut(s) 387, 475, 492, 538, 636
Hpy188III TCNNGA 3 cut(s) 283, 660, 773
Hpy8I GTNNAC 2 cut(s) 421, 618
HpyAV CCTTC 3 cut(s) 280, 438, 714
HpyCH4III ACNGT 2 cut(s) 525, 627
HpyCH4IV ACGT 2 cut(s) 32, 228
HpyCH4V TGCA 4 cut(s) 162, 548, 599, 699
HpySE526I ACGT 2 cut(s) 32, 228
Hsp92I GRCGYC 3 cut(s) 32, 228, 540
Hsp92II CATG 1 cut(s) 330
HspAI GCGC 1 cut(s) 687
Kpn2I TCCGGA 1 cut(s) 772
Kzo9I GATC 2 cut(s) 682, 775
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 5 cut(s) 123, 583, 605, 611, 681
LweI GCATC 2 cut(s) 408, 834
MaeI CTAG 1 cut(s) 311
MaeII ACGT 2 cut(s) 32, 228
MalI GATC 2 cut(s) 684, 777
MbiI CCGCTC 2 cut(s) 203, 789
MboI GATC 2 cut(s) 682, 775
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 1 cut(s) 775
MluCI AATT 4 cut(s) 218, 426, 483, 716
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 410
MroI TCCGGA 1 cut(s) 772
MslI CAYNNNNRTG 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 7 cut(s) 124, 136, 193, 238, 365, 396, 773
MspR9I CCNGG 4 cut(s) 44, 125, 233, 366
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 2 cut(s) 44, 233
MvnI CGCG 4 cut(s) 189, 356, 687, 814
NciI CCSGG 2 cut(s) 125, 366
NdeII GATC 2 cut(s) 682, 775
NlaIII CATG 1 cut(s) 330
NlaIV GGNNCC 6 cut(s) 182, 332, 363, 609, 777, 804
NmeAIII GCCGAG 2 cut(s) 222, 628
OliI CACNNNNGTG 1 cut(s) 416
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PfeI GAWTC 1 cut(s) 8
PflFI GACNNNGTC 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 231
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
PpuMI RGGWCCY 1 cut(s) 803
Psp5II RGGWCCY 1 cut(s) 803
Psp6I CCWGG 2 cut(s) 42, 231
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 2 cut(s) 42, 231
PspN4I GGNNCC 6 cut(s) 182, 332, 363, 609, 777, 804
PspPI GGNCC 5 cut(s) 133, 173, 181, 235, 803
PspPPI RGGWCCY 1 cut(s) 803
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 1 cut(s) 775
PsyI GACNNNGTC 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 416
SalI GTCGAC 1 cut(s) 616
Sau3AI GATC 2 cut(s) 682, 775
Sau96I GGNCC 5 cut(s) 133, 173, 181, 235, 803
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 4 cut(s) 44, 125, 233, 366
SetI ASST 9 cut(s) 35, 102, 159, 231, 312, 321, 336, 598, 649
SfaNI GCATC 2 cut(s) 408, 834
SfcI CTRYAG 1 cut(s) 597
SgrDI CGTCGACG 1 cut(s) 616
SinI GGWCC 3 cut(s) 181, 235, 803
SmiMI CAYNNNNRTG 1 cut(s) 416
Sse9I AATT 4 cut(s) 218, 426, 483, 716
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 4 cut(s) 42, 123, 231, 364
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 525, 627
TaiI ACGT 2 cut(s) 35, 231
TaqI TCGA 5 cut(s) 270, 341, 442, 531, 617
TaqII GACCGA 1 cut(s) 267
TasI AATT 4 cut(s) 218, 426, 483, 716
TauI GCSGC 5 cut(s) 58, 189, 203, 299, 814
TfiI GAWTC 1 cut(s) 8
TscAI CASTG 1 cut(s) 410
TseI GCWGC 7 cut(s) 111, 593, 596, 599, 669, 840, 843
TspDTI ATGAA 1 cut(s) 620
TspGWI ACGGA 1 cut(s) 600
TspRI CASTG 1 cut(s) 410
Tth111I GACNNNGTC 1 cut(s) 34
VpaK11BI GGWCC 3 cut(s) 181, 235, 803
XmiI GTMKAC 1 cut(s) 617
XspI CTAG 1 cut(s) 311
ZraI GACGTC 2 cut(s) 33, 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.