Transcription factor TCP4-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 683, 1259 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 34, 347, 923 |
| Acc36I | ACCTGC | 2 cut(s) | 683, 1259 |
| AccB1I | GGYRCC | 2 cut(s) | 523, 1099 |
| AccI | GTMKAC | 1 cut(s) | 210 |
| AccII | CGCG | 5 cut(s) | 536, 557, 1051, 1112, 1133 |
| AcoI | YGGCCR | 2 cut(s) | 423, 999 |
| AcsI | RAATTY | 2 cut(s) | 667, 1243 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 313, 432, 889, 1008 |
| AflIII | ACRYGT | 1 cut(s) | 43 |
| AgeI | ACCGGT | 1 cut(s) | 1256 |
| AgsI | TTSAA | 5 cut(s) | 84, 377, 667, 953, 1243 |
| AjiI | CACGTC | 4 cut(s) | 46, 78, 349, 925 |
| AjnI | CCWGG | 2 cut(s) | 149, 911 |
| Alw21I | GWGCWC | 2 cut(s) | 131, 179 |
| ApeKI | GCWGC | 3 cut(s) | 182, 627, 1203 |
| ApoI | RAATTY | 2 cut(s) | 667, 1243 |
| AsiGI | ACCGGT | 1 cut(s) | 1256 |
| AspA2I | CCTAGG | 1 cut(s) | 335 |
| AspLEI | GCGC | 4 cut(s) | 541, 617, 1117, 1193 |
| AsuHPI | GGTGA | 6 cut(s) | 661, 695, 707, 1237, 1271, 1283 |
| AsuNHI | GCTAGC | 1 cut(s) | 248 |
| AvaII | GGWCC | 3 cut(s) | 69, 340, 916 |
| AvrII | CCTAGG | 1 cut(s) | 335 |
| BanI | GGYRCC | 2 cut(s) | 523, 1099 |
| BanII | GRGCYC | 3 cut(s) | 131, 157, 179 |
| BbsI | GAAGAC | 1 cut(s) | 72 |
| Bbv12I | GWGCWC | 2 cut(s) | 131, 179 |
| BbvI | GCAGC | 3 cut(s) | 169, 639, 1215 |
| BccI | CCATC | 7 cut(s) | 199, 568, 695, 737, 1144, 1271, 1313 |
| BceAI | ACGGC | 3 cut(s) | 410, 460, 986 |
| BciT130I | CCWGG | 2 cut(s) | 151, 913 |
| BfaI | CTAG | 2 cut(s) | 249, 336 |
| BfmI | CTRYAG | 2 cut(s) | 674, 1250 |
| BfuAI | ACCTGC | 2 cut(s) | 683, 1259 |
| BglII | AGATCT | 1 cut(s) | 113 |
| BisI | GCNGC | 8 cut(s) | 183, 360, 537, 628, 810, 936, 1113, 1204 |
| BlnI | CCTAGG | 1 cut(s) | 335 |
| BlsI | GCNGC | 8 cut(s) | 184, 361, 538, 629, 811, 937, 1114, 1205 |
| Bme1390I | CCNGG | 2 cut(s) | 151, 913 |
| Bme18I | GGWCC | 3 cut(s) | 69, 340, 916 |
| BmgBI | CACGTC | 4 cut(s) | 46, 78, 349, 925 |
| BmiI | GGNNCC | 8 cut(s) | 156, 341, 482, 525, 910, 917, 1058, 1101 |
| BmrFI | CCNGG | 2 cut(s) | 151, 913 |
| BmtI | GCTAGC | 1 cut(s) | 252 |
| BpiI | GAAGAC | 1 cut(s) | 72 |
| BpmI | CTGGAG | 1 cut(s) | 179 |
| BpuEI | CTTGAG | 3 cut(s) | 127, 252, 828 |
| BsaWI | WCCGGW | 1 cut(s) | 1256 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 499, 529, 701, 731, 752, 782, 1277, 1307 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 313, 432, 889, 1008 |
| Bse118I | RCCGGY | 3 cut(s) | 411, 987, 1256 |
| Bse1I | ACTGG | 2 cut(s) | 19, 196 |
| Bse3DI | GCAATG | 3 cut(s) | 141, 624, 1200 |
| BseBI | CCWGG | 2 cut(s) | 151, 913 |
| BseGI | GGATG | 6 cut(s) | 239, 706, 748, 822, 1282, 1324 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 313, 432, 889, 1008 |
| BseMI | GCAATG | 3 cut(s) | 141, 624, 1200 |
| BseMII | CTCAG | 2 cut(s) | 578, 1154 |
| BseNI | ACTGG | 2 cut(s) | 19, 196 |
| BseRI | GAGGAG | 2 cut(s) | 177, 788 |
| BseXI | GCAGC | 3 cut(s) | 169, 639, 1215 |
| BseYI | CCCAGC | 3 cut(s) | 416, 763, 992 |
| BsgI | GTGCAG | 2 cut(s) | 304, 880 |
| Bsh1236I | CGCG | 5 cut(s) | 536, 557, 1051, 1112, 1133 |
| Bsh1285I | CGRYCG | 2 cut(s) | 412, 988 |
| BshNI | GGYRCC | 2 cut(s) | 523, 1099 |
| BshTI | ACCGGT | 1 cut(s) | 1256 |
| BsiEI | CGRYCG | 2 cut(s) | 412, 988 |
| BsiHKAI | GWGCWC | 2 cut(s) | 131, 179 |
| BsiSI | CCGG | 5 cut(s) | 352, 412, 928, 988, 1257 |
| BslFI | GGGAC | 3 cut(s) | 148, 353, 929 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 313, 432, 889, 1008 |
| BsmFI | GGGAC | 3 cut(s) | 148, 353, 929 |
| Bsp1286I | GDGCHC | 3 cut(s) | 131, 157, 179 |
| Bsp143I | GATC | 1 cut(s) | 113 |
| BspCNI | CTCAG | 2 cut(s) | 579, 1155 |
| BspFNI | CGCG | 5 cut(s) | 536, 557, 1051, 1112, 1133 |
| BspHI | TCATGA | 1 cut(s) | 48 |
| BspLI | GGNNCC | 8 cut(s) | 156, 341, 482, 525, 910, 917, 1058, 1101 |
| BspMAI | CTGCAG | 2 cut(s) | 678, 1254 |
| BspMI | ACCTGC | 2 cut(s) | 683, 1259 |
| BspOI | GCTAGC | 1 cut(s) | 252 |
| BspT107I | GGYRCC | 2 cut(s) | 523, 1099 |
| BsrDI | GCAATG | 3 cut(s) | 141, 624, 1200 |
| BsrFI | RCCGGY | 3 cut(s) | 411, 987, 1256 |
| BsrI | ACTGG | 2 cut(s) | 19, 196 |
| BssAI | RCCGGY | 3 cut(s) | 411, 987, 1256 |
| BssMI | GATC | 1 cut(s) | 113 |
| BssT1I | CCWWGG | 2 cut(s) | 335, 1026 |
| Bst2UI | CCWGG | 2 cut(s) | 151, 913 |
| Bst4CI | ACNGT | 2 cut(s) | 523, 1099 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 318, 894 |
| BstC8I | GCNNGC | 7 cut(s) | 250, 357, 402, 559, 933, 978, 1135 |
| BstDEI | CTNAG | 5 cut(s) | 281, 587, 798, 857, 1163 |
| BstDSI | CCRYGG | 4 cut(s) | 476, 534, 1049, 1110 |
| BstF5I | GGATG | 6 cut(s) | 239, 706, 748, 822, 1282, 1324 |
| BstFNI | CGCG | 5 cut(s) | 536, 557, 1051, 1112, 1133 |
| BstHHI | GCGC | 4 cut(s) | 541, 617, 1117, 1193 |
| BstKTI | GATC | 1 cut(s) | 116 |
| BstMBI | GATC | 1 cut(s) | 113 |
| BstMCI | CGRYCG | 2 cut(s) | 412, 988 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 318, 397, 547, 894, 973, 1123 |
| BstNI | CCWGG | 2 cut(s) | 151, 913 |
| BstNSI | RCATGY | 2 cut(s) | 725, 1301 |
| BstSCI | CCNGG | 2 cut(s) | 149, 911 |
| BstSFI | CTRYAG | 2 cut(s) | 674, 1250 |
| BstUI | CGCG | 5 cut(s) | 536, 557, 1051, 1112, 1133 |
| BstV1I | GCAGC | 3 cut(s) | 169, 639, 1215 |
| BstV2I | GAAGAC | 1 cut(s) | 72 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| BtgI | CCRYGG | 4 cut(s) | 476, 534, 1049, 1110 |
| BtrI | CACGTC | 4 cut(s) | 46, 78, 349, 925 |
| BtsCI | GGATG | 6 cut(s) | 239, 706, 748, 822, 1282, 1324 |
| BtsIMutI | CAGTG | 1 cut(s) | 203 |
| BveI | ACCTGC | 2 cut(s) | 683, 1259 |
| Cac8I | GCNNGC | 7 cut(s) | 250, 357, 402, 559, 933, 978, 1135 |
| CciI | TCATGA | 1 cut(s) | 48 |
| CfoI | GCGC | 4 cut(s) | 541, 617, 1117, 1193 |
| Cfr10I | RCCGGY | 3 cut(s) | 411, 987, 1256 |
| Cfr42I | CCGCGG | 3 cut(s) | 537, 1052, 1113 |
| CspAI | ACCGGT | 1 cut(s) | 1256 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 771, 806 |
| CviAII | CATG | 3 cut(s) | 49, 722, 1298 |
| DdeI | CTNAG | 5 cut(s) | 281, 587, 798, 857, 1163 |
| DpnI | GATC | 1 cut(s) | 115 |
| DpnII | GATC | 1 cut(s) | 113 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 34, 347, 923 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 34, 347, 923 |
| EaeI | YGGCCR | 2 cut(s) | 423, 999 |
| EciI | GGCGGA | 1 cut(s) | 656 |
| Ecl136II | GAGCTC | 2 cut(s) | 129, 177 |
| Eco130I | CCWWGG | 2 cut(s) | 335, 1026 |
| Eco147I | AGGCCT | 1 cut(s) | 1031 |
| Eco24I | GRGCYC | 3 cut(s) | 131, 157, 179 |
| Eco32I | GATATC | 2 cut(s) | 531, 1107 |
| Eco47I | GGWCC | 3 cut(s) | 69, 340, 916 |
| Eco53kI | GAGCTC | 2 cut(s) | 129, 177 |
| EcoICRI | GAGCTC | 2 cut(s) | 129, 177 |
| EcoO109I | RGGNCCY | 3 cut(s) | 147, 332, 908 |
| EcoRII | CCWGG | 2 cut(s) | 149, 911 |
| EcoRV | GATATC | 2 cut(s) | 531, 1107 |
| EcoT14I | CCWWGG | 2 cut(s) | 335, 1026 |
| EcoT38I | GRGCYC | 3 cut(s) | 131, 157, 179 |
| ErhI | CCWWGG | 2 cut(s) | 335, 1026 |
| FaeI | CATG | 3 cut(s) | 52, 725, 1301 |
| FaiI | YATR | 5 cut(s) | 50, 406, 723, 982, 1299 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 217, 249 |
| FaqI | GGGAC | 3 cut(s) | 148, 353, 929 |
| FatI | CATG | 3 cut(s) | 48, 721, 1297 |
| FauI | CCCGC | 3 cut(s) | 740, 805, 1316 |
| FblI | GTMKAC | 1 cut(s) | 210 |
| Fnu4HI | GCNGC | 8 cut(s) | 183, 360, 537, 628, 810, 936, 1113, 1204 |
| FokI | GGATG | 6 cut(s) | 226, 713, 755, 829, 1289, 1331 |
| FriOI | GRGCYC | 3 cut(s) | 131, 157, 179 |
| Fsp4HI | GCNGC | 8 cut(s) | 183, 360, 537, 628, 810, 936, 1113, 1204 |
| FspBI | CTAG | 2 cut(s) | 249, 336 |
| GlaI | GCGC | 4 cut(s) | 540, 616, 1116, 1192 |
| GluI | GCNGC | 8 cut(s) | 183, 360, 537, 628, 810, 936, 1113, 1204 |
| GsaI | CCCAGC | 3 cut(s) | 420, 767, 996 |
| GsuI | CTGGAG | 1 cut(s) | 179 |
| HapII | CCGG | 5 cut(s) | 352, 412, 928, 988, 1257 |
| HhaI | GCGC | 4 cut(s) | 541, 617, 1117, 1193 |
| Hin1II | CATG | 3 cut(s) | 52, 725, 1301 |
| Hin6I | GCGC | 4 cut(s) | 539, 615, 1115, 1191 |
| HinP1I | GCGC | 4 cut(s) | 539, 615, 1115, 1191 |
| HincII | GTYRAC | 1 cut(s) | 211 |
| HindII | GTYRAC | 1 cut(s) | 211 |
| HinfI | GANTC | 5 cut(s) | 28, 59, 94, 652, 1228 |
| HpaII | CCGG | 5 cut(s) | 352, 412, 928, 988, 1257 |
| HphI | GGTGA | 6 cut(s) | 661, 695, 707, 1237, 1271, 1283 |
| Hpy166II | GTNNAC | 2 cut(s) | 72, 211 |
| Hpy188III | TCNNGA | 8 cut(s) | 49, 84, 442, 571, 727, 1018, 1147, 1303 |
| Hpy8I | GTNNAC | 2 cut(s) | 72, 211 |
| Hpy99I | CGWCG | 7 cut(s) | 59, 67, 172, 175, 431, 523, 1007 |
| HpyAV | CCTTC | 3 cut(s) | 213, 292, 868 |
| HpyCH4III | ACNGT | 2 cut(s) | 523, 1099 |
| HpyCH4IV | ACGT | 5 cut(s) | 45, 77, 161, 348, 924 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 318, 397, 547, 894, 973, 1123 |
| HpyF3I | CTNAG | 5 cut(s) | 281, 587, 798, 857, 1163 |
| HpySE526I | ACGT | 5 cut(s) | 45, 77, 161, 348, 924 |
| Hsp92II | CATG | 3 cut(s) | 52, 725, 1301 |
| HspAI | GCGC | 4 cut(s) | 539, 615, 1115, 1191 |
| KspI | CCGCGG | 3 cut(s) | 537, 1052, 1113 |
| Kzo9I | GATC | 1 cut(s) | 113 |
| LmnI | GCTCC | 8 cut(s) | 126, 160, 190, 198, 643, 760, 1219, 1336 |
| Lsp1109I | GCAGC | 3 cut(s) | 169, 639, 1215 |
| MaeI | CTAG | 2 cut(s) | 249, 336 |
| MaeII | ACGT | 5 cut(s) | 45, 77, 161, 348, 924 |
| MalI | GATC | 1 cut(s) | 115 |
| MboI | GATC | 1 cut(s) | 113 |
| MboII | GAAGA | 4 cut(s) | 72, 228, 504, 1080 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MhlI | GDGCHC | 3 cut(s) | 131, 157, 179 |
| MluCI | AATT | 9 cut(s) | 9, 377, 492, 604, 667, 953, 1068, 1180, 1243 |
| MlyI | GAGTC | 3 cut(s) | 22, 53, 88 |
| MmeI | TCCRAC | 4 cut(s) | 122, 182, 542, 750 |
| MseI | TTAA | 1 cut(s) | 12 |
| MspA1I | CMGCKG | 3 cut(s) | 536, 1051, 1112 |
| MspI | CCGG | 5 cut(s) | 352, 412, 928, 988, 1257 |
| MspR9I | CCNGG | 2 cut(s) | 151, 913 |
| MvaI | CCWGG | 2 cut(s) | 151, 913 |
| MvnI | CGCG | 5 cut(s) | 536, 557, 1051, 1112, 1133 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 318, 397, 547, 894, 973, 1123 |
| NdeII | GATC | 1 cut(s) | 113 |
| NheI | GCTAGC | 1 cut(s) | 248 |
| NlaIII | CATG | 3 cut(s) | 52, 725, 1301 |
| NlaIV | GGNNCC | 8 cut(s) | 156, 341, 482, 525, 910, 917, 1058, 1101 |
| NmeAIII | GCCGAG | 1 cut(s) | 110 |
| NspI | RCATGY | 2 cut(s) | 725, 1301 |
| PagI | TCATGA | 1 cut(s) | 48 |
| PaqCI | CACCTGC | 2 cut(s) | 683, 1259 |
| PasI | CCCWGGG | 2 cut(s) | 150, 912 |
| PceI | AGGCCT | 1 cut(s) | 1031 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 51, 167, 554, 1130 |
| PfeI | GAWTC | 2 cut(s) | 652, 1228 |
| PflFI | GACNNNGTC | 1 cut(s) | 67 |
| PinAI | ACCGGT | 1 cut(s) | 1256 |
| PkrI | GCNGC | 8 cut(s) | 184, 361, 538, 629, 811, 937, 1114, 1205 |
| PleI | GAGTC | 3 cut(s) | 22, 53, 88 |
| PpsI | GAGTC | 3 cut(s) | 22, 53, 88 |
| Psp124BI | GAGCTC | 2 cut(s) | 131, 179 |
| Psp6I | CCWGG | 2 cut(s) | 149, 911 |
| PspFI | CCCAGC | 3 cut(s) | 416, 763, 992 |
| PspGI | CCWGG | 2 cut(s) | 149, 911 |
| PspN4I | GGNNCC | 8 cut(s) | 156, 341, 482, 525, 910, 917, 1058, 1101 |
| PstI | CTGCAG | 2 cut(s) | 678, 1254 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| PsyI | GACNNNGTC | 1 cut(s) | 67 |
| SacI | GAGCTC | 2 cut(s) | 131, 179 |
| SacII | CCGCGG | 3 cut(s) | 537, 1052, 1113 |
| SalI | GTCGAC | 1 cut(s) | 209 |
| SaqAI | TTAA | 1 cut(s) | 12 |
| SatI | GCNGC | 8 cut(s) | 183, 360, 537, 628, 810, 936, 1113, 1204 |
| Sau3AI | GATC | 1 cut(s) | 113 |
| SchI | GAGTC | 3 cut(s) | 22, 53, 88 |
| ScrFI | CCNGG | 2 cut(s) | 151, 913 |
| SduI | GDGCHC | 3 cut(s) | 131, 157, 179 |
| SfcI | CTRYAG | 2 cut(s) | 674, 1250 |
| Sfr303I | CCGCGG | 3 cut(s) | 537, 1052, 1113 |
| SgrBI | CCGCGG | 3 cut(s) | 537, 1052, 1113 |
| SinI | GGWCC | 3 cut(s) | 69, 340, 916 |
| SmlI | CTYRAG | 3 cut(s) | 142, 267, 843 |
| SmoI | CTYRAG | 3 cut(s) | 142, 267, 843 |
| Sse9I | AATT | 9 cut(s) | 9, 377, 492, 604, 667, 953, 1068, 1180, 1243 |
| SseBI | AGGCCT | 1 cut(s) | 1031 |
| SspMI | CTAG | 2 cut(s) | 249, 336 |
| SstI | GAGCTC | 2 cut(s) | 131, 179 |
| StuI | AGGCCT | 1 cut(s) | 1031 |
| StyD4I | CCNGG | 2 cut(s) | 149, 911 |
| StyI | CCWWGG | 2 cut(s) | 335, 1026 |
| TaaI | ACNGT | 2 cut(s) | 523, 1099 |
| TaiI | ACGT | 5 cut(s) | 48, 80, 164, 351, 927 |
| TaqI | TCGA | 8 cut(s) | 62, 210, 429, 462, 572, 1005, 1038, 1148 |
| TaqII | GACCGA | 1 cut(s) | 68 |
| TasI | AATT | 9 cut(s) | 9, 377, 492, 604, 667, 953, 1068, 1180, 1243 |
| TauI | GCSGC | 5 cut(s) | 362, 539, 812, 938, 1115 |
| TfiI | GAWTC | 2 cut(s) | 652, 1228 |
| Tru1I | TTAA | 1 cut(s) | 12 |
| Tru9I | TTAA | 1 cut(s) | 12 |
| TscAI | CASTG | 1 cut(s) | 203 |
| TseI | GCWGC | 3 cut(s) | 182, 627, 1203 |
| TspDTI | ATGAA | 2 cut(s) | 228, 833 |
| TspGWI | ACGGA | 2 cut(s) | 750, 1326 |
| TspRI | CASTG | 1 cut(s) | 203 |
| Tth111I | GACNNNGTC | 1 cut(s) | 67 |
| VpaK11BI | GGWCC | 3 cut(s) | 69, 340, 916 |
| XapI | RAATTY | 2 cut(s) | 667, 1243 |
| XceI | RCATGY | 2 cut(s) | 725, 1301 |
| XmaJI | CCTAGG | 1 cut(s) | 335 |
| XmiI | GTMKAC | 1 cut(s) | 210 |
| XspI | CTAG | 2 cut(s) | 249, 336 |