Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

7747940 .. 7748629

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031720

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGACTTCTCATTCCCAAGAGAGTCTCTATCTGCAAATGTCACAACAAAGAGAATCAAAGGAGGAGGAGGAGGAGGAGGAAGAAAATGAAGCTCAAGATCAACCAGAAGTTGCTCAAGCACAACAAGACTATGGAGCAAGCAGAGTGGAATCTACACAACCAAGCATGAACAATGAAAGATATGGAAGGATCGTGAAGGTTCAAGGAGGCCACGTTATTAGATCAATTGCGAGAAAAGACAGGCACAGCAAGATCTACACGTCCAAGGGCCCAAGAGACAGAAGGTTCCGGCTTTCAGCTCAAACTGCCATAGAGTTCTATGATGTTCAAGACCGTCTTGGCTTTGATAGACCAAGCAAGGCCATTGACTGGCTCATTCACAAGGCCAAGGCCGCCATTGAAGCTCTCGAAGATTCTTCTACTACACACCAGCCTCAGCATCACCAAGGAGGCAATGCCGATCCAGAAACTGTCAATACTCATCAGCCTTTGGACGAGAGCACTATGAAAAATGAGAGCAAAGAACCTGTTCTTGACCATGCTGAAGAAGCCCTCAATTGTGCTCCCAATTTATCAGAGGCCAATTTCATGGAGATGGGTTGGTTTCAAAGTCTGATGGCTTGGAATTACAATGCAGGTGATGGTGGAGAAGGTTGTTCTTTCAATTCATCATCTGTTACTCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

230

Amino Acids

25.89

Weight (kDa)

4.95

Isoelectric Point (pI)

63.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	77 - 160	6.2e-32	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	626
AccB7I	CCANNNNNTGG	1 cut(s)	369
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	2 cut(s)	197, 455
AcuI	CTGAAG	1 cut(s)	564
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	5 cut(s)	203, 329, 401, 608, 664
AjiI	CACGTC	1 cut(s)	261
AluBI	AGCT	3 cut(s)	92, 299, 404
AluI	AGCT	3 cut(s)	92, 299, 404
Alw21I	GWGCWC	2 cut(s)	503, 565
Alw26I	GTCTC	2 cut(s)	29, 270
AlwI	GGATC	2 cut(s)	197, 455
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	6 cut(s)	208, 268, 360, 384, 390, 579
ApaI	GGGCCC	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	528
AspS9I	GGNCC	2 cut(s)	268, 269
AsuHPI	GGTGA	2 cut(s)	434, 650
BaeGI	GKGCMC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	272
Bbv12I	GWGCWC	2 cut(s)	503, 565
BbvCI	CCTCAGC	1 cut(s)	435
BccI	CCATC	3 cut(s)	589, 610, 635
BcoDI	GTCTC	2 cut(s)	29, 270
BfmI	CTRYAG	1 cut(s)	686
BfuAI	ACCTGC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	268, 269
BmiI	GGNNCC	2 cut(s)	270, 287
BmsI	GCATC	1 cut(s)	448
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	78, 99
BsaJI	CCNNGG	3 cut(s)	264, 387, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	374
Bse3DI	GCAATG	1 cut(s)	460
BseDI	CCNNGG	3 cut(s)	264, 387, 445
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	5 cut(s)	77, 80, 83, 86, 89
BseSI	GKGCMC	1 cut(s)	272
BshFI	GGCC	6 cut(s)	210, 270, 362, 386, 392, 581
BsiHKAI	GWGCWC	2 cut(s)	503, 565
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	2 cut(s)	29, 270
BsnI	GGCC	6 cut(s)	210, 270, 362, 386, 392, 581
Bsp120I	GGGCCC	1 cut(s)	268
Bsp1286I	GDGCHC	3 cut(s)	272, 503, 565
Bsp143I	GATC	5 cut(s)	97, 189, 221, 252, 460
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	6 cut(s)	210, 270, 362, 386, 392, 581
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	270, 287
BspMI	ACCTGC	1 cut(s)	626
BspPI	GGATC	2 cut(s)	197, 455
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	3 cut(s)	264, 387, 445
BssMI	GATC	5 cut(s)	97, 189, 221, 252, 460
BssT1I	CCWWGG	3 cut(s)	264, 387, 445
Bst4CI	ACNGT	2 cut(s)	335, 472
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	435
BstKTI	GATC	5 cut(s)	100, 192, 224, 255, 463
BstMAI	GTCTC	2 cut(s)	29, 270
BstMBI	GATC	5 cut(s)	97, 189, 221, 252, 460
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 392, 401, 548
BstSFI	CTRYAG	1 cut(s)	686
BstSLI	GKGCMC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	252
BstXI	CCANNNNNNTGG	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	6 cut(s)	210, 270, 362, 386, 392, 581
BtrI	CACGTC	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	626
Cac8I	GCNNGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	268, 269
CspCI	CAANNNNNGTGG	2 cut(s)	126, 161
CviAII	CATG	3 cut(s)	166, 539, 589
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	5 cut(s)	99, 191, 223, 254, 462
DpnII	GATC	5 cut(s)	97, 189, 221, 252, 460
Eco130I	CCWWGG	3 cut(s)	264, 387, 445
Eco24I	GRGCYC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	564
EcoO109I	RGGNCCY	1 cut(s)	268
EcoT14I	CCWWGG	3 cut(s)	264, 387, 445
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	3 cut(s)	264, 387, 445
FaeI	CATG	3 cut(s)	169, 542, 592
FaiI	YATR	9 cut(s)	132, 167, 183, 311, 321, 506, 540, 590, 688
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	3 cut(s)	165, 538, 588
Fnu4HI	GCNGC	1 cut(s)	393
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
HaeIII	GGCC	6 cut(s)	210, 270, 362, 386, 392, 581
HapII	CCGG	1 cut(s)	289
Hin1II	CATG	3 cut(s)	169, 542, 592
HinfI	GANTC	4 cut(s)	22, 53, 149, 413
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	2 cut(s)	434, 650
Hpy188I	TCNGA	2 cut(s)	577, 615
Hpy188III	TCNNGA	6 cut(s)	95, 193, 329, 407, 464, 533
HpyAV	CCTTC	4 cut(s)	180, 190, 276, 644
HpyCH4III	ACNGT	2 cut(s)	335, 472
HpyCH4IV	ACGT	2 cut(s)	213, 260
HpyCH4V	TGCA	2 cut(s)	34, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 392, 401, 548
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	2 cut(s)	213, 260
Hsp92II	CATG	3 cut(s)	169, 542, 592
Kzo9I	GATC	5 cut(s)	97, 189, 221, 252, 460
LmnI	GCTCC	2 cut(s)	134, 568
LpnPI	CCDG	8 cut(s)	117, 226, 302, 355, 443, 477, 540, 621
LweI	GCATC	1 cut(s)	448
MaeII	ACGT	2 cut(s)	213, 260
MaeIII	GTNAC	2 cut(s)	39, 676
MalI	GATC	5 cut(s)	99, 191, 223, 254, 462
MboI	GATC	5 cut(s)	97, 189, 221, 252, 460
MboII	GAAGA	4 cut(s)	92, 408, 422, 557
MfeI	CAATTG	2 cut(s)	225, 556
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	3 cut(s)	272, 503, 565
MluCI	AATT	6 cut(s)	225, 556, 568, 583, 625, 664
MlyI	GAGTC	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	593
MspI	CCGG	1 cut(s)	289
MunI	CAATTG	2 cut(s)	225, 556
MwoI	GCNNNNNNNGC	4 cut(s)	305, 392, 401, 548
NdeII	GATC	5 cut(s)	97, 189, 221, 252, 460
NlaIII	CATG	3 cut(s)	169, 542, 592
NlaIV	GGNNCC	2 cut(s)	270, 287
NmuCI	GTSAC	1 cut(s)	39
PaqCI	CACCTGC	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	53, 149, 413
PflMI	CCANNNNNTGG	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	270, 287
PspOMI	GGGCCC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	268, 269
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	593
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	5 cut(s)	97, 189, 221, 252, 460
Sau96I	GGNCC	2 cut(s)	268, 269
SchI	GAGTC	1 cut(s)	31
SduI	GDGCHC	3 cut(s)	272, 503, 565
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	93, 114
SmoI	CTYRAG	2 cut(s)	93, 114
Sse9I	AATT	6 cut(s)	225, 556, 568, 583, 625, 664
SsiI	CCGC	1 cut(s)	393
StyI	CCWWGG	3 cut(s)	264, 387, 445
TaaI	ACNGT	2 cut(s)	335, 472
TaiI	ACGT	2 cut(s)	216, 263
TaqI	TCGA	1 cut(s)	408
TasI	AATT	6 cut(s)	225, 556, 568, 583, 625, 664
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	3 cut(s)	53, 149, 413
TseFI	GTSAC	1 cut(s)	39
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	6 cut(s)	102, 182, 189, 521, 577, 657
Van91I	CCANNNNNTGG	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.