Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002060.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

14479 .. 14958

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002060.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgaaatatgcaggaagaaaaattggggagagccacaacaacctccaccaccgcgcaatgacgtcgtcctctgctgcttctcgattgggtttgggtataaggactgcttcttcctccatcgccagcgaaattgcgggggttcgaggccacattctaagggccaccgaccggaaggaccgccacagcaaggtctacaccgccaaaggccccagggaccaccgcgtccggctcgtcgcccacaccgccattcaattctacgacgtgcaagatcggctcggatacgaccggcccagcaaggccgttgattgcgtcatcaagaaagccaaggccgcaatcgacgagctgccgccgtggaacccgaacatcaatttctgttcagacaacatcttctccgacagtgttgatatccgccccgtaggacacgcagaacgcgagcctccatttctcgatggtggagactccgagttctttgtctgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

159

Amino Acids

17.61

Weight (kDa)

9.27

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AatII	GACGTC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	3 cut(s)	54, 222, 432
AciI	CCGC	9 cut(s)	52, 134, 178, 198, 220, 243, 330, 347, 409
AcyI	GRCGYC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	168, 187
AgsI	TTSAA	1 cut(s)	251
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	450
AoxI	GGCC	6 cut(s)	145, 159, 205, 287, 297, 327
ApeKI	GCWGC	2 cut(s)	74, 343
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	5 cut(s)	159, 175, 206, 214, 288
AvaII	GGWCC	2 cut(s)	175, 214
BbvI	GCAGC	2 cut(s)	61, 330
BccI	CCATC	2 cut(s)	125, 443
BceAI	ACGGC	2 cut(s)	284, 334
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	1 cut(s)	211
BciVI	GTATCC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	450
BfuI	GTATCC	1 cut(s)	272
BisI	GCNGC	4 cut(s)	75, 330, 344, 347
BlsI	GCNGC	4 cut(s)	76, 331, 345, 348
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	2 cut(s)	175, 214
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	5 cut(s)	159, 175, 206, 214, 288
BmiI	GGNNCC	3 cut(s)	208, 215, 356
BmrFI	CCNGG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	4 cut(s)	209, 210, 324, 350
BsaWI	WCCGGW	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 187
Bse118I	RCCGGY	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	4 cut(s)	209, 210, 324, 350
BseLI	CCNNNNNNNGG	2 cut(s)	168, 187
BseMI	GCAATG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	61, 330
BseYI	CCCAGC	1 cut(s)	290
Bsh1236I	CGCG	3 cut(s)	54, 222, 432
Bsh1285I	CGRYCG	2 cut(s)	169, 286
BshFI	GGCC	6 cut(s)	147, 161, 207, 289, 299, 329
BsiEI	CGRYCG	2 cut(s)	169, 286
BsiSI	CCGG	3 cut(s)	169, 226, 286
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	168, 187
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	6 cut(s)	147, 161, 207, 289, 299, 329
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	9 cut(s)	52, 134, 178, 198, 220, 243, 330, 347, 409
BspANI	GGCC	6 cut(s)	147, 161, 207, 289, 299, 329
BspFNI	CGCG	3 cut(s)	54, 222, 432
BspLI	GGNNCC	3 cut(s)	208, 215, 356
BsrDI	GCAATG	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	4 cut(s)	209, 210, 324, 350
BssMI	GATC	1 cut(s)	268
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	398
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	124, 434
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	350
BstFNI	CGCG	3 cut(s)	54, 222, 432
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	1 cut(s)	268
BstMCI	CGRYCG	2 cut(s)	169, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 271, 329
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstUI	CGCG	3 cut(s)	54, 222, 432
BstV1I	GCAGC	2 cut(s)	61, 330
BsuI	GTATCC	1 cut(s)	272
BsuRI	GGCC	6 cut(s)	147, 161, 207, 289, 299, 329
BtgI	CCRYGG	1 cut(s)	350
BtgZI	GCGATG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	124, 434
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	285
Cfr13I	GGNCC	5 cut(s)	159, 175, 206, 214, 288
CseI	GACGC	2 cut(s)	211, 298
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	175, 214
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	209
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaiI	YATR	2 cut(s)	9, 98
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FaqI	GGGAC	1 cut(s)	227
FauI	CCCGC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	75, 330, 344, 347
Fsp4HI	GCNGC	4 cut(s)	75, 330, 344, 347
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	4 cut(s)	75, 330, 344, 347
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	6 cut(s)	147, 161, 207, 289, 299, 329
HapII	CCGG	3 cut(s)	169, 226, 286
HgaI	GACGC	2 cut(s)	211, 298
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	3 cut(s)	169, 226, 286
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	4 cut(s)	278, 379, 394, 463
Hpy188III	TCNNGA	3 cut(s)	81, 316, 446
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	4 cut(s)	67, 236, 263, 341
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	2 cut(s)	62, 261
HpyCH4V	TGCA	2 cut(s)	11, 265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 271, 329
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	2 cut(s)	62, 261
Hsp92I	GRCGYC	1 cut(s)	62
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	7 cut(s)	136, 182, 196, 223, 239, 299, 304
Lsp1109I	GCAGC	2 cut(s)	61, 330
MaeII	ACGT	2 cut(s)	62, 261
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	27, 102, 379
MluCI	AATT	4 cut(s)	21, 129, 251, 367
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	5 cut(s)	53, 79, 124, 137, 447
MspI	CCGG	3 cut(s)	169, 226, 286
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	3 cut(s)	54, 222, 432
MwoI	GCNNNNNNNGC	3 cut(s)	242, 271, 329
NdeII	GATC	1 cut(s)	268
NlaIV	GGNNCC	3 cut(s)	208, 215, 356
PasI	CCCWGGG	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PflFI	GACNNNGTC	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	76, 331, 345, 348
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	208, 215, 356
PspPI	GGNCC	5 cut(s)	159, 175, 206, 214, 288
PsyI	GACNNNGTC	1 cut(s)	64
SatI	GCNGC	4 cut(s)	75, 330, 344, 347
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	5 cut(s)	159, 175, 206, 214, 288
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	5 cut(s)	45, 65, 192, 264, 345
SinI	GGWCC	2 cut(s)	175, 214
Sse9I	AATT	4 cut(s)	21, 129, 251, 367
SsiI	CCGC	9 cut(s)	52, 134, 178, 198, 220, 243, 330, 347, 409
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	2 cut(s)	65, 264
TaqI	TCGA	4 cut(s)	82, 142, 336, 447
TasI	AATT	4 cut(s)	21, 129, 251, 367
TauI	GCSGC	2 cut(s)	332, 349
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	2 cut(s)	74, 343
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	403
Tth111I	GACNNNGTC	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	175, 214
XmiI	GTMKAC	1 cut(s)	192
ZraI	GACGTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.