Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000324.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

156733 .. 160959

Gene Structure 4227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000324.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgggttctcctaggtccgaccaacctaagcctccgcatcggggccatttagtgcaccttggtatgctagttcgatttctgggctcatcttccaccaatagtcgatcatggtggcgaatcaaagaggaaatcaacccagtagctcgtacaggccgacctgaccggaattcctatttttgggctgatatgctaaaagtaagtgtgcaatttaaccctgaaaatgtcatcgttagtatacggattgcttcttcctccaccgctagcgaaatcgtggaggctcgagaccacattctaagggccacctaccggaaggaccgccatagcaaggtttgcaccgccaaaggccccaaggaccaccccgcctggcttgccgcccacaccgccaatcaattctacgacgtgcaagaccggctcggatatgaccggcccagcatggctgtcgattggctcatcaagaaagccaaggccgtaatagacgagctgtcgtcgtggaacccgaactcaatttctgttcagacaacatcttcttcgaatgtgtcgatatccgccgcgcaagaaacgcagaacgtgagcctccatttctcgatggtggaggctccaagtgaggatggtgtggaggtggtgttgcatgtcgggaattacggagaggatggcggggtgggattggagctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

224

Amino Acids

24.88

Weight (kDa)

7.14

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	235
AccII	CGCG	1 cut(s)	551
AcsI	RAATTY	1 cut(s)	166
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	4 cut(s)	41, 177, 306, 325
AhdI	GACNNNNNGTC	1 cut(s)	481
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	3 cut(s)	143, 481, 670
AluI	AGCT	3 cut(s)	143, 481, 670
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	276
Alw44I	GTGCAC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	6 cut(s)	43, 151, 297, 343, 425, 465
ApaLI	GTGCAC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	166
AspA2I	CCTAGG	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	7 cut(s)	15, 43, 297, 313, 344, 352, 426
AsuII	TTCGAA	1 cut(s)	530
AsuNHI	GCTAGC	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	279
AvaII	GGWCC	3 cut(s)	15, 313, 352
AvrII	CCTAGG	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	3 cut(s)	580, 602, 644
BceAI	ACGGC	1 cut(s)	452
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BciT130I	CCWGG	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	3 cut(s)	12, 68, 261
BisI	GCNGC	2 cut(s)	372, 549
BlnI	CCTAGG	1 cut(s)	11
BlsI	GCNGC	2 cut(s)	373, 550
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	3 cut(s)	15, 313, 352
BmeRI	GACNNNNNGTC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	279
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	7 cut(s)	15, 43, 297, 313, 344, 352, 426
BmiI	GGNNCC	4 cut(s)	44, 346, 494, 597
BmrFI	CCNGG	1 cut(s)	364
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	46
BmtI	GCTAGC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	131
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	530
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	11, 58, 348, 462
BsaWI	WCCGGW	2 cut(s)	162, 306
BsaXI	ACNNNNNCTCC	2 cut(s)	608, 638
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 177, 306, 325
Bse118I	RCCGGY	2 cut(s)	408, 423
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	4 cut(s)	11, 58, 348, 462
BseGI	GGATG	2 cut(s)	613, 655
BseLI	CCNNNNNNNGG	4 cut(s)	41, 177, 306, 325
BseNI	ACTGG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	57
BseYI	CCCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	6 cut(s)	45, 153, 299, 345, 427, 467
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	4 cut(s)	163, 307, 409, 424
BslI	CCNNNNNNNGG	4 cut(s)	41, 177, 306, 325
BsmAI	GTCTC	1 cut(s)	276
BsnI	GGCC	6 cut(s)	45, 153, 299, 345, 427, 467
Bso31I	GGTCTC	1 cut(s)	276
BsoBI	CYCGRG	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	57, 86
Bsp143I	GATC	1 cut(s)	104
BspANI	GGCC	6 cut(s)	45, 153, 299, 345, 427, 467
BspFNI	CGCG	1 cut(s)	551
BspLI	GGNNCC	4 cut(s)	44, 346, 494, 597
BspOI	GCTAGC	1 cut(s)	264
BspT104I	TTCGAA	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	276
BsrFI	RCCGGY	2 cut(s)	408, 423
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	2 cut(s)	408, 423
BssECI	CCNNGG	4 cut(s)	11, 58, 348, 462
BssMI	GATC	1 cut(s)	104
BssNAI	GTATAC	1 cut(s)	236
BssT1I	CCWWGG	4 cut(s)	11, 58, 348, 462
Bst1107I	GTATAC	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstBI	TTCGAA	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	262, 369
BstDEI	CTNAG	2 cut(s)	27, 293
BstF5I	GGATG	2 cut(s)	613, 655
BstFNI	CGCG	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	5 cut(s)	330, 368, 380, 409, 559
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	1 cut(s)	551
BstZ17I	GTATAC	1 cut(s)	236
BsuRI	GGCC	6 cut(s)	45, 153, 299, 345, 427, 467
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	613, 655
Cac8I	GCNNGC	2 cut(s)	262, 369
CfoI	GCGC	1 cut(s)	553
Cfr10I	RCCGGY	2 cut(s)	408, 423
Cfr13I	GGNCC	7 cut(s)	15, 43, 297, 313, 344, 352, 426
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	3 cut(s)	108, 433, 629
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	2 cut(s)	27, 293
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
DriI	GACNNNNNGTC	1 cut(s)	481
Eam1105I	GACNNNNNGTC	1 cut(s)	481
EciI	GGCGGA	1 cut(s)	535
Eco130I	CCWWGG	4 cut(s)	11, 58, 348, 462
Eco24I	GRGCYC	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	543
Eco47I	GGWCC	3 cut(s)	15, 313, 352
Eco88I	CYCGRG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	543
EcoT14I	CCWWGG	4 cut(s)	11, 58, 348, 462
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	4 cut(s)	11, 58, 348, 462
FaeI	CATG	3 cut(s)	111, 436, 632
FaiI	YATR	8 cut(s)	65, 109, 188, 236, 321, 420, 434, 630
FatI	CATG	3 cut(s)	107, 432, 628
FauI	CCCGC	2 cut(s)	367, 647
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	372, 549
FokI	GGATG	2 cut(s)	620, 662
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	372, 549
FspBI	CTAG	3 cut(s)	12, 68, 261
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	2 cut(s)	372, 549
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	6 cut(s)	45, 153, 299, 345, 427, 467
HapII	CCGG	4 cut(s)	163, 307, 409, 424
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	3 cut(s)	111, 436, 632
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	4 cut(s)	163, 307, 409, 424
Hpy166II	GTNNAC	2 cut(s)	55, 236
Hpy188I	TCNGA	3 cut(s)	19, 416, 516
Hpy188III	TCNNGA	4 cut(s)	281, 454, 583, 634
Hpy8I	GTNNAC	2 cut(s)	55, 236
Hpy99I	CGWCG	2 cut(s)	401, 490
HpyAV	CCTTC	1 cut(s)	304
HpyCH4IV	ACGT	2 cut(s)	399, 567
HpyCH4V	TGCA	5 cut(s)	55, 205, 333, 403, 628
HpyF10VI	GCNNNNNNNGC	5 cut(s)	330, 368, 380, 409, 559
HpyF3I	CTNAG	2 cut(s)	27, 293
HpySE526I	ACGT	2 cut(s)	399, 567
Hsp92II	CATG	3 cut(s)	111, 436, 632
HspAI	GCGC	1 cut(s)	551
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	601, 667
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	3 cut(s)	12, 68, 261
MaeII	ACGT	2 cut(s)	399, 567
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	4 cut(s)	81, 240, 516, 519
MhlI	GDGCHC	2 cut(s)	57, 86
MluCI	AATT	5 cut(s)	166, 206, 389, 504, 637
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	9 cut(s)	42, 118, 262, 268, 584, 586, 598, 610, 640
MseI	TTAA	1 cut(s)	210
MspI	CCGG	4 cut(s)	163, 307, 409, 424
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	5 cut(s)	330, 368, 380, 409, 559
NdeII	GATC	1 cut(s)	104
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	111, 436, 632
NlaIV	GGNNCC	4 cut(s)	44, 346, 494, 597
NspI	RCATGY	1 cut(s)	632
NspV	TTCGAA	1 cut(s)	530
PaeR7I	CTCGAG	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	3 cut(s)	151, 494, 536
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	373, 550
Psp6I	CCWGG	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	4 cut(s)	44, 346, 494, 597
PspPI	GGNCC	7 cut(s)	15, 43, 297, 313, 344, 352, 426
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	372, 549
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	7 cut(s)	15, 43, 297, 313, 344, 352, 426
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	57, 86
SfaNI	GCATC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	279
SfuI	TTCGAA	1 cut(s)	530
SinI	GGWCC	3 cut(s)	15, 313, 352
SlaI	CTCGAG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	5 cut(s)	166, 206, 389, 504, 637
SspMI	CTAG	3 cut(s)	12, 68, 261
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	4 cut(s)	11, 58, 348, 462
TaiI	ACGT	2 cut(s)	402, 570
TaqI	TCGA	7 cut(s)	73, 103, 280, 441, 530, 539, 584
TasI	AATT	5 cut(s)	166, 206, 389, 504, 637
TauI	GCSGC	2 cut(s)	374, 551
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TspGWI	ACGGA	2 cut(s)	253, 657
VneI	GTGCAC	1 cut(s)	53
VpaK11BI	GGWCC	3 cut(s)	15, 313, 352
XapI	RAATTY	1 cut(s)	166
XceI	RCATGY	1 cut(s)	632
XhoI	CTCGAG	1 cut(s)	279
XmaJI	CCTAGG	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	235
XspI	CTAG	3 cut(s)	12, 68, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.