Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040629.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 947

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 316 bp

gactgcttcttcttgcacctctagcgaaatcgtggaggctcgaggacacattctaagggccacctgtcggaaggaccaccacagcaaggtctgcaccgccaaaggccccagggaccacctcgtcctgctcgccgcccacaccaccattcaattctacgacgtgcaagaccggctcggatacgatcggcccagcatggcagtcgattggctcatcaagaaagccaagcctgcaatcgacgagctgccgtcgtggaacccgaactcaatttttgttcagacaacatcttctccgacggtgccgatatcggccgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

104

Amino Acids

11.43

Weight (kDa)

8.54

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	296
AccII	CGCG	1 cut(s)	312
AciI	CCGC	3 cut(s)	97, 133, 310
AcoI	YGGCCR	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	67, 86
AgsI	TTSAA	1 cut(s)	150
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	4 cut(s)	58, 104, 186, 307
ApeKI	GCWGC	1 cut(s)	242
AspS9I	GGNCC	5 cut(s)	58, 74, 105, 113, 187
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	74, 113
BanI	GGYRCC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	3 cut(s)	133, 243, 310
BlsI	GCNGC	3 cut(s)	134, 244, 311
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	74, 113
BmeT110I	CYCGRG	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	5 cut(s)	58, 74, 105, 113, 187
BmiI	GGNNCC	4 cut(s)	107, 114, 255, 298
BmrFI	CCNGG	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	108, 109
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 86
Bse118I	RCCGGY	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	108, 109
BseLI	CCNNNNNNNGG	2 cut(s)	67, 86
BseX3I	CGGCCG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	312
Bsh1285I	CGRYCG	2 cut(s)	185, 310
BshFI	GGCC	4 cut(s)	60, 106, 188, 309
BshNI	GGYRCC	1 cut(s)	296
BsiEI	CGRYCG	2 cut(s)	185, 310
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	67, 86
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	4 cut(s)	60, 106, 188, 309
BsoBI	CYCGRG	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	182
BspACI	CCGC	3 cut(s)	97, 133, 310
BspANI	GGCC	4 cut(s)	60, 106, 188, 309
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	4 cut(s)	107, 114, 255, 298
BspT107I	GGYRCC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	108, 109
BssMI	GATC	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	130, 229
BstDEI	CTNAG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	182
BstMCI	CGRYCG	2 cut(s)	185, 310
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 91, 170, 228
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	229
BstZI	CGGCCG	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	4 cut(s)	60, 106, 188, 309
BtrI	CACGTC	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	130, 229
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	5 cut(s)	58, 74, 105, 113, 187
CviAII	CATG	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
DrdI	GACNNNNNNGTC	1 cut(s)	120
DseDI	GACNNNNNNGTC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	307
EagI	CGGCCG	1 cut(s)	307
EclXI	CGGCCG	1 cut(s)	307
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	74, 113
Eco52I	CGGCCG	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	304
FaeI	CATG	1 cut(s)	197
FaiI	YATR	1 cut(s)	195
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	133, 243, 310
Fsp4HI	GCNGC	3 cut(s)	133, 243, 310
FspBI	CTAG	1 cut(s)	22
GluI	GCNGC	3 cut(s)	133, 243, 310
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	4 cut(s)	60, 106, 188, 309
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	1 cut(s)	197
HpaII	CCGG	1 cut(s)	170
Hpy188I	TCNGA	4 cut(s)	70, 177, 277, 292
Hpy188III	TCNNGA	1 cut(s)	215
Hpy99I	CGWCG	4 cut(s)	162, 240, 251, 296
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	16, 94, 164, 231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 91, 170, 228
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	77, 95, 122, 138, 183, 203, 241
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	22
MaeII	ACGT	1 cut(s)	160
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	1 cut(s)	277
MluCI	AATT	2 cut(s)	150, 265
MmeI	TCCRAC	2 cut(s)	48, 315
MnlI	CCTC	4 cut(s)	29, 29, 36, 129
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	22, 91, 170, 228
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	4 cut(s)	107, 114, 255, 298
PaeR7I	CTCGAG	1 cut(s)	40
PasI	CCCWGGG	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	134, 244, 311
Ple19I	CGATCG	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	4 cut(s)	107, 114, 255, 298
PspPI	GGNCC	5 cut(s)	58, 74, 105, 113, 187
PspXI	VCTCGAGB	1 cut(s)	40
PvuI	CGATCG	1 cut(s)	185
SatI	GCNGC	3 cut(s)	133, 243, 310
Sau3AI	GATC	1 cut(s)	182
Sau96I	GGNCC	5 cut(s)	58, 74, 105, 113, 187
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	6 cut(s)	21, 66, 91, 121, 163, 244
Sfr274I	CTCGAG	1 cut(s)	40
SinI	GGWCC	2 cut(s)	74, 113
SlaI	CTCGAG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	2 cut(s)	150, 265
SsiI	CCGC	3 cut(s)	97, 133, 310
SspMI	CTAG	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	41, 202, 235
TasI	AATT	2 cut(s)	150, 265
TauI	GCSGC	2 cut(s)	135, 312
TseI	GCWGC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	74, 113
XhoI	CTCGAG	1 cut(s)	40
XspI	CTAG	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.