Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001374.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

137128 .. 138024

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001374.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgatacctgaacttacaaagttatcaatgactgcttcttcctccaccgctagcgaaatcagagaggctcgaggccacattctaagggccaccggccggaaggacagccacaacaaggtctgcattgccaaaggccccagggaccaccacgtccggctcgccgcccacaccgccattcaattctactacgtacaaaaccggctcagatacgacctgcctagcatggccgtcgattgtctcatcaagaaagccaaggccgcaatggaagagctgccgccgtggaacccgaactcaatttttgttcagacaacatcttctccgacggtgccaatatccgctgcacaaaacgcgagcctccatttctcgatggtggaggctccgagttctttgtttgctaataggcaaggcgcaatggtggacagcagcggagtggcggagctggtgaatcagaacagctcgaattttctgcaggtgaggatggtgtggaggccgaagttaatgttaatctttgtctgcctacaattgcctctgatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

178

Amino Acids

19.73

Weight (kDa)

9.67

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
AasI	GACNNNNNNGTC	1 cut(s)	149
Acc36I	ACCTGC	2 cut(s)	222, 460
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	350
AciI	CCGC	8 cut(s)	48, 162, 171, 258, 275, 336, 426, 434
AcoI	YGGCCR	2 cut(s)	94, 225
AcsI	RAATTY	1 cut(s)	460
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	96, 115
AgsI	TTSAA	1 cut(s)	179
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	3 cut(s)	271, 439, 456
AluI	AGCT	3 cut(s)	271, 439, 456
Alw26I	GTCTC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	7 cut(s)	73, 87, 94, 133, 225, 255, 488
ApeKI	GCWGC	3 cut(s)	271, 338, 423
ApoI	RAATTY	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	3 cut(s)	87, 134, 142
AsuHPI	GGTGA	2 cut(s)	454, 484
AsuNHI	GCTAGC	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	258, 325, 435
BccI	CCATC	2 cut(s)	361, 472
BceAI	ACGGC	2 cut(s)	212, 262
BcgI	CGANNNNNNTGC	4 cut(s)	211, 245, 448, 482
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	51, 219
BfmI	CTRYAG	1 cut(s)	467
BfuAI	ACCTGC	2 cut(s)	222, 460
BisI	GCNGC	6 cut(s)	162, 258, 272, 275, 339, 424
BlsI	GCNGC	6 cut(s)	163, 259, 273, 276, 340, 425
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	69
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	87, 134, 142
BmiI	GGNNCC	5 cut(s)	136, 143, 284, 327, 378
BmrFI	CCNGG	1 cut(s)	139
BmtI	GCTAGC	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	4 cut(s)	137, 138, 252, 278
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 115
Bse118I	RCCGGY	2 cut(s)	92, 198
Bse3DI	GCAATG	3 cut(s)	123, 267, 417
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	4 cut(s)	137, 138, 252, 278
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	96, 115
BseMI	GCAATG	3 cut(s)	123, 267, 417
BseMII	CTCAG	1 cut(s)	217
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	258, 325, 435
BsgI	GTGCAG	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	7 cut(s)	75, 89, 96, 135, 227, 257, 490
BshNI	GGYRCC	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	4 cut(s)	93, 97, 154, 199
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	96, 115
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	7 cut(s)	75, 89, 96, 135, 227, 257, 490
BsoBI	CYCGRG	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	8 cut(s)	48, 162, 171, 258, 275, 336, 426, 434
BspANI	GGCC	7 cut(s)	75, 89, 96, 135, 227, 257, 490
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	5 cut(s)	136, 143, 284, 327, 378
BspMAI	CTGCAG	1 cut(s)	471
BspMI	ACCTGC	2 cut(s)	222, 460
BspOI	GCTAGC	1 cut(s)	54
BspQI	GCTCTTC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	325
BsrDI	GCAATG	3 cut(s)	123, 267, 417
BsrFI	RCCGGY	2 cut(s)	92, 198
BssAI	RCCGGY	2 cut(s)	92, 198
BssECI	CCNNGG	4 cut(s)	137, 138, 252, 278
BssMI	GATC	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	52, 159, 352
BstDEI	CTNAG	2 cut(s)	83, 203
BstDSI	CCRYGG	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	483
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	531
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 257, 347
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	467
BstSNI	TACGTA	1 cut(s)	190
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	258, 325, 435
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	7 cut(s)	75, 89, 96, 135, 227, 257, 490
BtgI	CCRYGG	1 cut(s)	278
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	483
BveI	ACCTGC	2 cut(s)	222, 460
Cac8I	GCNNGC	3 cut(s)	52, 159, 352
CfoI	GCGC	1 cut(s)	410
Cfr10I	RCCGGY	2 cut(s)	92, 198
Cfr13I	GGNCC	3 cut(s)	87, 134, 142
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	1 cut(s)	223
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	83, 203
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	2 cut(s)	94, 225
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	449
EclXI	CGGCCG	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	142
Eco52I	CGGCCG	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	226
FaiI	YATR	1 cut(s)	224
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	6 cut(s)	162, 258, 272, 275, 339, 424
FokI	GGATG	1 cut(s)	490
Fsp4HI	GCNGC	6 cut(s)	162, 258, 272, 275, 339, 424
FspBI	CTAG	2 cut(s)	51, 219
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	6 cut(s)	162, 258, 272, 275, 339, 424
HaeIII	GGCC	7 cut(s)	75, 89, 96, 135, 227, 257, 490
HapII	CCGG	4 cut(s)	93, 97, 154, 199
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HinfI	GANTC	1 cut(s)	445
HpaII	CCGG	4 cut(s)	93, 97, 154, 199
HphI	GGTGA	2 cut(s)	454, 484
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	7 cut(s)	62, 206, 306, 321, 381, 450, 531
Hpy188III	TCNNGA	2 cut(s)	244, 364
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	2 cut(s)	233, 325
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	2 cut(s)	150, 189
HpyCH4V	TGCA	3 cut(s)	123, 341, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 257, 347
HpyF3I	CTNAG	2 cut(s)	83, 203
HpySE526I	ACGT	2 cut(s)	150, 189
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	1 cut(s)	408
Kzo9I	GATC	1 cut(s)	531
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	382, 436
Lsp1109I	GCAGC	3 cut(s)	258, 325, 435
MaeI	CTAG	2 cut(s)	51, 219
MaeII	ACGT	2 cut(s)	150, 189
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	3 cut(s)	30, 278, 306
MfeI	CAATTG	1 cut(s)	521
MluCI	AATT	4 cut(s)	179, 294, 460, 521
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	8 cut(s)	52, 58, 65, 365, 367, 468, 480, 537
MseI	TTAA	2 cut(s)	497, 503
MspA1I	CMGCKG	2 cut(s)	338, 426
MspI	CCGG	4 cut(s)	93, 97, 154, 199
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	170, 257, 347
NdeII	GATC	1 cut(s)	531
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	5 cut(s)	136, 143, 284, 327, 378
PaeR7I	CTCGAG	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	460
PasI	CCCWGGG	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	445
PkrI	GCNGC	6 cut(s)	163, 259, 273, 276, 340, 425
Ppu21I	YACGTR	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	5 cut(s)	136, 143, 284, 327, 378
PspPI	GGNCC	3 cut(s)	87, 134, 142
PspXI	VCTCGAGB	1 cut(s)	69
PstI	CTGCAG	1 cut(s)	471
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	497, 503
SatI	GCNGC	6 cut(s)	162, 258, 272, 275, 339, 424
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	3 cut(s)	87, 134, 142
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	9 cut(s)	10, 120, 153, 192, 216, 273, 441, 458, 474
SfcI	CTRYAG	1 cut(s)	467
Sfr274I	CTCGAG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
SnaBI	TACGTA	1 cut(s)	190
Sse9I	AATT	4 cut(s)	179, 294, 460, 521
SsiI	CCGC	8 cut(s)	48, 162, 171, 258, 275, 336, 426, 434
SspMI	CTAG	2 cut(s)	51, 219
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	2 cut(s)	153, 192
TaqI	TCGA	4 cut(s)	70, 231, 365, 458
TasI	AATT	4 cut(s)	179, 294, 460, 521
TauI	GCSGC	3 cut(s)	164, 260, 277
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	2 cut(s)	497, 503
Tru9I	TTAA	2 cut(s)	497, 503
TseI	GCWGC	3 cut(s)	271, 338, 423
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	69
XspI	CTAG	2 cut(s)	51, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.