Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007904.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

2893 .. 3288

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007904.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgggggagagccacaacaacctccaccaccgcgcaatgaccgaaatcgtggaggctcgaggccacattctaagggccaccggccggaaggaccgccacagcaaggtctgcaccgccaaaggccccagggaccaccgcgtccggctcgccgcccacaccgccattcaattctacgacgtgcaagacaggttcggatacgaccggcccagcatagctatcgattggctcatcaagaaagccaaagccgcaatcgacgagctgccgccgtggaacccgaactcaatttctgttcagacaacatcttctccaacggtgccgatatccgccgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

110

Amino Acids

12.3

Weight (kDa)

9.8

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	313
AccII	CGCG	3 cut(s)	33, 138, 329
AcoI	YGGCCR	1 cut(s)	82
AfiI	CCNNNNNNNGG	2 cut(s)	84, 103
AgsI	TTSAA	1 cut(s)	167
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	215, 259
AluI	AGCT	2 cut(s)	215, 259
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	5 cut(s)	61, 75, 82, 121, 203
ApeKI	GCWGC	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	5 cut(s)	75, 91, 122, 130, 204
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	2 cut(s)	91, 130
BanI	GGYRCC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	1 cut(s)	127
BciVI	GTATCC	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	5 cut(s)	150, 246, 260, 263, 327
BlsI	GCNGC	5 cut(s)	151, 247, 261, 264, 328
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	2 cut(s)	91, 130
BmeT110I	CYCGRG	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	5 cut(s)	75, 91, 122, 130, 204
BmiI	GGNNCC	4 cut(s)	124, 131, 272, 315
BmrFI	CCNGG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	125, 126, 266
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 103
Bse118I	RCCGGY	2 cut(s)	80, 201
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	125, 126, 266
BseLI	CCNNNNNNNGG	2 cut(s)	84, 103
BseMI	GCAATG	1 cut(s)	42
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	246
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	94
Bsh1236I	CGCG	3 cut(s)	33, 138, 329
Bsh1285I	CGRYCG	2 cut(s)	85, 202
BshFI	GGCC	5 cut(s)	63, 77, 84, 123, 205
BshNI	GGYRCC	1 cut(s)	313
BshVI	ATCGAT	1 cut(s)	219
BsiEI	CGRYCG	2 cut(s)	85, 202
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	4 cut(s)	81, 85, 142, 202
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	84, 103
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	5 cut(s)	63, 77, 84, 123, 205
BsoBI	CYCGRG	1 cut(s)	57
BspANI	GGCC	5 cut(s)	63, 77, 84, 123, 205
BspDI	ATCGAT	1 cut(s)	219
BspFNI	CGCG	3 cut(s)	33, 138, 329
BspLI	GGNNCC	4 cut(s)	124, 131, 272, 315
BspT107I	GGYRCC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	2 cut(s)	80, 201
BssAI	RCCGGY	2 cut(s)	80, 201
BssECI	CCNNGG	3 cut(s)	125, 126, 266
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	313
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	71
BstDSI	CCRYGG	1 cut(s)	266
BstFNI	CGCG	3 cut(s)	33, 138, 329
BstHHI	GCGC	1 cut(s)	35
BstMCI	CGRYCG	2 cut(s)	85, 202
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 158, 245
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstUI	CGCG	3 cut(s)	33, 138, 329
BstV1I	GCAGC	1 cut(s)	246
BstZI	CGGCCG	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	219
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	5 cut(s)	63, 77, 84, 123, 205
BsuTUI	ATCGAT	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	266
BtrI	CACGTC	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	2 cut(s)	80, 201
Cfr13I	GGNCC	5 cut(s)	75, 91, 122, 130, 204
ClaI	ATCGAT	1 cut(s)	219
CseI	GACGC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	71
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	313
EclXI	CGGCCG	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	91, 130
Eco52I	CGGCCG	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	125
EcoRV	GATATC	1 cut(s)	321
FaiI	YATR	1 cut(s)	212
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	5 cut(s)	150, 246, 260, 263, 327
Fsp4HI	GCNGC	5 cut(s)	150, 246, 260, 263, 327
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	5 cut(s)	150, 246, 260, 263, 327
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	5 cut(s)	63, 77, 84, 123, 205
HapII	CCGG	4 cut(s)	81, 85, 142, 202
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HpaII	CCGG	4 cut(s)	81, 85, 142, 202
Hpy188I	TCNGA	2 cut(s)	194, 294
Hpy188III	TCNNGA	1 cut(s)	232
Hpy99I	CGWCG	2 cut(s)	179, 257
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	111, 181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 158, 245
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	177
HspAI	GCGC	1 cut(s)	33
LpnPI	CCDG	8 cut(s)	94, 98, 112, 139, 155, 172, 215, 220
Lsp1109I	GCAGC	1 cut(s)	246
MaeII	ACGT	1 cut(s)	177
MboII	GAAGA	1 cut(s)	294
MluCI	AATT	2 cut(s)	167, 282
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	3 cut(s)	32, 46, 53
MspI	CCGG	4 cut(s)	81, 85, 142, 202
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
MvnI	CGCG	3 cut(s)	33, 138, 329
MwoI	GCNNNNNNNGC	3 cut(s)	108, 158, 245
NlaIV	GGNNCC	4 cut(s)	124, 131, 272, 315
PaeR7I	CTCGAG	1 cut(s)	57
PasI	CCCWGGG	1 cut(s)	126
PkrI	GCNGC	5 cut(s)	151, 247, 261, 264, 328
Psp6I	CCWGG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	4 cut(s)	124, 131, 272, 315
PspPI	GGNCC	5 cut(s)	75, 91, 122, 130, 204
PspXI	VCTCGAGB	1 cut(s)	57
SatI	GCNGC	5 cut(s)	150, 246, 260, 263, 327
Sau96I	GGNCC	5 cut(s)	75, 91, 122, 130, 204
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	6 cut(s)	24, 108, 180, 191, 217, 261
Sfr274I	CTCGAG	1 cut(s)	57
SinI	GGWCC	2 cut(s)	91, 130
SlaI	CTCGAG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	2 cut(s)	167, 282
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	58, 219, 252
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	167, 282
TauI	GCSGC	4 cut(s)	152, 248, 265, 329
TseI	GCWGC	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	91, 130
XhoI	CTCGAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.