Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

43753231 .. 43753953

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1305100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTACGACAAAGAGAATCAAAGAATAAGGAAGAACAGAATGAAGATTATCAGCATGTTCACTACTTGCTGCCTACTTCAAAATCGGCATTCAAGCAACCGCCGGTTGACAATGCGAGATATGAACATATTGTGAAAGTTCACGGAGGCCACATTGTCCGATCCCTGGCAAGAAAAGACCGGCACAGCAAGGTGTACACTTCGAAAGGTCCGAGAGACCGGAGGTTCCGGCTGTCAGCTCATACTGCTATACAGTTCTATGATGTCCAAGACCGCCTTGGCTACGACCGTCCGGGTAAGGCCATTGATTGGCTCATTAAGAAGTCCAAAGCAGCCATTGAAGCACTCTCTAAGTCTGAACAACCTTGCCAAGAGTACAATGATTGCACTAATACGAATGTTTTTGGTCAGCAGACTGAGCAAGAAATTGGAGAACAAAGTATGCATCAGTTTTGGAATCACCCGGAAAGCAATGGGGAACTGGAAACAATGAGCAATGTTAGTCCCATGAACAATGTCAACAATCTGAAAGAACCGGTTTTCGATCCTCACCAGTTAAGTTCATTGAACTATGCCGAAGAAGCCCTCGATTCTGCATCAAGTCTATCGGATTCCAAATTCAAGGAGATGGGATGGTTTCAAAGTTTGGTGGCTTGGAATTATAATGCAAGTGATGGAGGAGAAATCTGTCCTTACAATTCATCGCATGTATCTCTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

241

Amino Acids

27.59

Weight (kDa)

6.31

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	57 - 166	6.5e-32	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AccB7I	CCANNNNNTGG	1 cut(s)	309
AciI	CCGC	2 cut(s)	101, 274
AclWI	GGATC	2 cut(s)	156, 539
AcsI	RAATTY	1 cut(s)	617
AfaI	GTAC	2 cut(s)	197, 377
AfiI	CCNNNNNNNGG	2 cut(s)	166, 309
AgeI	ACCGGT	1 cut(s)	535
AgsI	TTSAA	6 cut(s)	81, 94, 341, 568, 622, 641
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	156, 539
AoxI	GGCC	2 cut(s)	148, 300
ApeKI	GCWGC	2 cut(s)	70, 332
ApoI	RAATTY	1 cut(s)	617
AsiGI	ACCGGT	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	2 cut(s)	294, 464
AsuHPI	GGTGA	2 cut(s)	452, 542
AsuII	TTCGAA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	57, 344
BccI	CCATC	3 cut(s)	622, 627, 668
BciT130I	CCWGG	1 cut(s)	167
BcnI	CCSGG	2 cut(s)	294, 464
BcoDI	GTCTC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	71, 333
BlsI	GCNGC	2 cut(s)	72, 334
Bme1390I	CCNGG	3 cut(s)	167, 294, 464
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	3 cut(s)	167, 294, 464
BmsI	GCATC	2 cut(s)	454, 605
Bpu14I	TTCGAA	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	294, 464
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	165, 277
BsaWI	WCCGGW	2 cut(s)	219, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 309
Bse118I	RCCGGY	3 cut(s)	103, 180, 535
Bse1I	ACTGG	2 cut(s)	486, 553
Bse3DI	GCAATG	2 cut(s)	478, 502
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	165, 277
BseGI	GGATG	1 cut(s)	638
BseLI	CCNNNNNNNGG	2 cut(s)	166, 309
BseMI	GCAATG	2 cut(s)	478, 502
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	486, 553
BseRI	GAGGAG	1 cut(s)	693
BseXI	GCAGC	2 cut(s)	57, 344
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	150, 302
BshTI	ACCGGT	1 cut(s)	535
BsiEI	CGRYCG	1 cut(s)	289
BsiSI	CCGG	7 cut(s)	104, 181, 220, 229, 293, 464, 536
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	2 cut(s)	166, 309
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	489
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	150, 302
Bso31I	GGTCTC	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	203
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	161, 544
BspACI	CCGC	2 cut(s)	101, 274
BspANI	GGCC	2 cut(s)	150, 302
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	227
BspPI	GGATC	2 cut(s)	156, 539
BspT104I	TTCGAA	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	210
BsrDI	GCAATG	2 cut(s)	478, 502
BsrFI	RCCGGY	3 cut(s)	103, 180, 535
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	486, 553
BssAI	RCCGGY	3 cut(s)	103, 180, 535
BssECI	CCNNGG	2 cut(s)	165, 277
BssMI	GATC	2 cut(s)	161, 544
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	255, 290
BstAUI	TGTACA	1 cut(s)	195
BstBI	TTCGAA	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	351, 417
BstF5I	GGATG	1 cut(s)	638
BstKTI	GATC	2 cut(s)	164, 547
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	161, 544
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 341, 418, 581
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	2 cut(s)	59, 710
BstSCI	CCNGG	3 cut(s)	165, 292, 462
BstV1I	GCAGC	2 cut(s)	57, 344
BsuRI	GGCC	2 cut(s)	150, 302
BtgZI	GCGATG	1 cut(s)	687
BtsCI	GGATG	1 cut(s)	638
Cfr10I	RCCGGY	3 cut(s)	103, 180, 535
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	196, 376
CspAI	ACCGGT	1 cut(s)	535
CviAII	CATG	3 cut(s)	56, 508, 707
CviJI	RGCY	9 cut(s)	150, 232, 239, 282, 302, 313, 335, 584, 653
CviKI_1	RGCY	9 cut(s)	150, 232, 239, 282, 302, 313, 335, 584, 653
CviQI	GTAC	2 cut(s)	196, 376
DdeI	CTNAG	2 cut(s)	351, 417
DpnI	GATC	2 cut(s)	163, 546
DpnII	GATC	2 cut(s)	161, 544
Eco130I	CCWWGG	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	3 cut(s)	59, 511, 710
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	3 cut(s)	55, 507, 706
Fnu4HI	GCNGC	2 cut(s)	71, 333
FokI	GGATG	1 cut(s)	645
Fsp4HI	GCNGC	2 cut(s)	71, 333
GluI	GCNGC	2 cut(s)	71, 333
HaeIII	GGCC	2 cut(s)	150, 302
HapII	CCGG	7 cut(s)	104, 181, 220, 229, 293, 464, 536
Hin1II	CATG	3 cut(s)	59, 511, 710
HincII	GTYRAC	2 cut(s)	109, 520
HindII	GTYRAC	2 cut(s)	109, 520
HinfI	GANTC	4 cut(s)	17, 457, 590, 611
HpaII	CCGG	7 cut(s)	104, 181, 220, 229, 293, 464, 536
HphI	GGTGA	2 cut(s)	452, 542
Hpy166II	GTNNAC	6 cut(s)	61, 109, 142, 196, 198, 520
Hpy188I	TCNGA	5 cut(s)	161, 213, 358, 528, 610
Hpy8I	GTNNAC	6 cut(s)	61, 109, 142, 196, 198, 520
HpyCH4III	ACNGT	2 cut(s)	255, 290
HpyCH4V	TGCA	5 cut(s)	387, 445, 596, 668, 718
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 341, 418, 581
HpyF3I	CTNAG	2 cut(s)	351, 417
Hsp92II	CATG	3 cut(s)	59, 511, 710
Kzo9I	GATC	2 cut(s)	161, 544
Lsp1109I	GCAGC	2 cut(s)	57, 344
LweI	GCATC	2 cut(s)	454, 605
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	163, 546
MboI	GATC	2 cut(s)	161, 544
MboII	GAAGA	3 cut(s)	44, 56, 590
MluCI	AATT	4 cut(s)	426, 617, 658, 697
MnlI	CCTC	5 cut(s)	140, 216, 558, 596, 671
Mph1103I	ATGCAT	1 cut(s)	447
MseI	TTAA	2 cut(s)	318, 557
MspI	CCGG	7 cut(s)	104, 181, 220, 229, 293, 464, 536
MspR9I	CCNGG	3 cut(s)	167, 294, 464
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	4 cut(s)	245, 341, 418, 581
NciI	CCSGG	2 cut(s)	294, 464
NdeII	GATC	2 cut(s)	161, 544
NlaIII	CATG	3 cut(s)	59, 511, 710
NlaIV	GGNNCC	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	2 cut(s)	59, 710
NspV	TTCGAA	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	4 cut(s)	17, 457, 590, 611
PflMI	CCANNNNNTGG	1 cut(s)	309
PinAI	ACCGGT	1 cut(s)	535
PkrI	GCNGC	2 cut(s)	72, 334
PsiI	TTATAA	1 cut(s)	663
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	197, 377
RsaNI	GTAC	2 cut(s)	196, 376
SaqAI	TTAA	2 cut(s)	318, 557
SatI	GCNGC	2 cut(s)	71, 333
Sau3AI	GATC	2 cut(s)	161, 544
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	167, 294, 464
SetI	ASST	5 cut(s)	195, 211, 227, 241, 367
SfaNI	GCATC	2 cut(s)	454, 605
SfuI	TTCGAA	1 cut(s)	203
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	4 cut(s)	426, 617, 658, 697
SsiI	CCGC	2 cut(s)	101, 274
StyD4I	CCNGG	3 cut(s)	165, 292, 462
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	255, 290
TaqI	TCGA	3 cut(s)	203, 543, 588
TasI	AATT	4 cut(s)	426, 617, 658, 697
TatI	WGTACW	2 cut(s)	195, 375
TfiI	GAWTC	4 cut(s)	17, 457, 590, 611
Tru1I	TTAA	2 cut(s)	318, 557
Tru9I	TTAA	2 cut(s)	318, 557
TseI	GCWGC	2 cut(s)	70, 332
TspDTI	ATGAA	5 cut(s)	57, 138, 524, 552, 690
TspGWI	ACGGA	1 cut(s)	159
Van91I	CCANNNNNTGG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	617
XceI	RCATGY	2 cut(s)	59, 710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.