Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

31427422 .. 31431328

Gene Structure 3907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013430

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGGAGAGCCACAACAACCTCCACCACCGTGCAACGACGTCGTCCTCCACTACTTCTCGATTGGGTTTGGGGATAAGGACTGCTTCTTCCTCCGCCGCCAGCGAAATCGTGGAGGCTCGAGGCCACATTCTAAGGGCCACTGGCCGGAAGGACCGCCACAGTAAGGTCTACTCTGCTAAAGGCCCTAAGGACGGCCGCGTCCTGCTCGCCGTCCACACCGCCATTCAATTCTACATCGTGCAGGACCGGCTCGGATACAACCGACCCAGCAAGGCAGTCGATTGGCTCATCAAGAAAGCCAAGGCAGTAATCGATGAGCTCGACGAGCTGCCGCCGTGGAACCCGAACTCAATTTTTGTTCAGACAACATCTTCTCCGACGTGTGCGACGACAGTGTGGTGGTCTGATTTGGTTGCAGTTAGGTTGGAGGTGCGGTTGCACAGTGGATGTCCAACACCTACTCTGGTGCCCAAAGAATGCTCGGCTGCCCAGTTGAGAGCCATATGGGTTTGGGCCTCTGCCTTTTCTGGTGATGATAGGAACATGTACTCGATCTCCAGTGTATTGGTGACAATGGCTGTATGGCACCAGTGGGGACTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

203

Amino Acids

22.36

Weight (kDa)

9.43

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	49 - 111	1.2e-21	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	44
AccB1I	GGYRCC	2 cut(s)	469, 588
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	1 cut(s)	201
AciI	CCGC	7 cut(s)	96, 99, 157, 199, 222, 335, 436
AcoI	YGGCCR	2 cut(s)	145, 196
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	3 cut(s)	147, 166, 194
AflIII	ACRYGT	2 cut(s)	383, 546
AgsI	TTSAA	1 cut(s)	230
AjiI	CACGTC	1 cut(s)	384
AleI	CACNNNNGTG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	322, 331
AluI	AGCT	2 cut(s)	322, 331
Alw21I	GWGCWC	1 cut(s)	324
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	6 cut(s)	124, 138, 145, 184, 196, 516
ApeKI	GCWGC	2 cut(s)	331, 488
AspS9I	GGNCC	5 cut(s)	138, 154, 185, 247, 516
AsuHPI	GGTGA	2 cut(s)	545, 583
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	154, 247
AxyI	CCTNAGG	1 cut(s)	189
BaeGI	GKGCMC	1 cut(s)	474
BanI	GGYRCC	2 cut(s)	469, 588
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	318, 475
BceAI	ACGGC	3 cut(s)	197, 211, 322
BcgI	CGANNNNNNTGC	4 cut(s)	24, 58, 262, 296
BciVI	GTATCC	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	251
BisI	GCNGC	5 cut(s)	99, 199, 332, 335, 489
BlsI	GCNGC	5 cut(s)	100, 200, 333, 336, 490
Bme18I	GGWCC	2 cut(s)	154, 247
BmeT110I	CYCGRG	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	384
BmgT120I	GGNCC	5 cut(s)	138, 154, 185, 247, 516
BmiI	GGNNCC	3 cut(s)	344, 471, 590
BmrI	ACTGGG	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	544
Bsa29I	ATCGAT	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	303, 338
BsaXI	ACNNNNNCTCC	6 cut(s)	361, 391, 422, 452, 542, 572
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 166, 194
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	5 cut(s)	148, 493, 561, 592, 606
Bse21I	CCTNAGG	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	303, 338
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	3 cut(s)	147, 166, 194
BseNI	ACTGG	5 cut(s)	148, 493, 561, 592, 606
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	474
BseX3I	CGGCCG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	318, 475
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	6 cut(s)	126, 140, 147, 186, 198, 518
BshNI	GGYRCC	2 cut(s)	469, 588
BshVI	ATCGAT	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	148, 250
BslI	CCNNNNNNNGG	3 cut(s)	147, 166, 194
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	6 cut(s)	126, 140, 147, 186, 198, 518
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	324, 474
Bsp143I	GATC	1 cut(s)	555
BspACI	CCGC	7 cut(s)	96, 99, 157, 199, 222, 335, 436
BspANI	GGCC	6 cut(s)	126, 140, 147, 186, 198, 518
BspDI	ATCGAT	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	344, 471, 590
BspT107I	GGYRCC	2 cut(s)	469, 588
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	5 cut(s)	148, 493, 561, 592, 606
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	303, 338
BssMI	GATC	1 cut(s)	555
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	4 cut(s)	32, 164, 397, 446
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	103, 210
BstDEI	CTNAG	2 cut(s)	134, 189
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	455
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	558
BstMBI	GATC	1 cut(s)	555
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 328
BstNSI	RCATGY	1 cut(s)	550
BstSLI	GKGCMC	1 cut(s)	474
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	318, 475
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstZI	CGGCCG	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	315
Bsu36I	CCTNAGG	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	6 cut(s)	126, 140, 147, 186, 198, 518
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	338
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	455
BtsIMutI	CAGTG	5 cut(s)	141, 402, 451, 568, 599
Cac8I	GCNNGC	2 cut(s)	103, 210
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	5 cut(s)	138, 154, 185, 247, 516
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	1 cut(s)	547
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	134, 189
DpnI	GATC	1 cut(s)	557
DpnII	GATC	1 cut(s)	555
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	145, 196
EagI	CGGCCG	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	322
EclXI	CGGCCG	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	154, 247
Eco52I	CGGCCG	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	322
Eco81I	CCTNAGG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	550
FaiI	YATR	4 cut(s)	506, 508, 548, 586
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	1 cut(s)	546
FauNDI	CATATG	1 cut(s)	506
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	99, 199, 332, 335, 489
FokI	GGATG	1 cut(s)	462
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	5 cut(s)	99, 199, 332, 335, 489
GluI	GCNGC	5 cut(s)	99, 199, 332, 335, 489
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	544
HaeIII	GGCC	6 cut(s)	126, 140, 147, 186, 198, 518
HapII	CCGG	2 cut(s)	148, 250
HgaI	GACGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	550
HpaII	CCGG	2 cut(s)	148, 250
HphI	GGTGA	2 cut(s)	545, 583
Hpy166II	GTNNAC	2 cut(s)	172, 217
Hpy188I	TCNGA	4 cut(s)	257, 366, 381, 409
Hpy188III	TCNNGA	2 cut(s)	60, 295
Hpy8I	GTNNAC	2 cut(s)	172, 217
Hpy99I	CGWCG	5 cut(s)	43, 46, 329, 385, 394
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	4 cut(s)	32, 164, 397, 446
HpyCH4IV	ACGT	2 cut(s)	41, 383
HpyCH4V	TGCA	4 cut(s)	35, 244, 419, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 328
HpyF3I	CTNAG	2 cut(s)	134, 189
HpySE526I	ACGT	2 cut(s)	41, 383
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	550
Kzo9I	GATC	1 cut(s)	555
Lsp1109I	GCAGC	2 cut(s)	318, 475
MaeII	ACGT	2 cut(s)	41, 383
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	1 cut(s)	557
MboI	GATC	1 cut(s)	555
MboII	GAAGA	2 cut(s)	81, 366
MhlI	GDGCHC	2 cut(s)	324, 474
MluCI	AATT	2 cut(s)	230, 354
MmeI	TCCRAC	3 cut(s)	404, 408, 479
MnlI	CCTC	7 cut(s)	32, 58, 103, 109, 116, 424, 529
MslI	CAYNNNNRTG	1 cut(s)	30
MspI	CCGG	2 cut(s)	148, 250
Mva1269I	GAATGC	1 cut(s)	485
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	250, 328
NdeI	CATATG	1 cut(s)	506
NdeII	GATC	1 cut(s)	555
NlaIII	CATG	1 cut(s)	550
NlaIV	GGNNCC	3 cut(s)	344, 471, 590
NmeAIII	GCCGAG	1 cut(s)	464
NmuCI	GTSAC	1 cut(s)	571
NspI	RCATGY	1 cut(s)	550
OliI	CACNNNNGTG	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	120
PciI	ACATGT	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 389
PctI	GAATGC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	43
PkrI	GCNGC	5 cut(s)	100, 200, 333, 336, 490
PscI	ACATGT	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	3 cut(s)	344, 471, 590
PspPI	GGNCC	5 cut(s)	138, 154, 185, 247, 516
PspXI	VCTCGAGB	1 cut(s)	120
PsyI	GACNNNGTC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	324
SatI	GCNGC	5 cut(s)	99, 199, 332, 335, 489
Sau3AI	GATC	1 cut(s)	555
Sau96I	GGNCC	5 cut(s)	138, 154, 185, 247, 516
SduI	GDGCHC	2 cut(s)	324, 474
SetI	ASST	9 cut(s)	24, 44, 171, 324, 333, 386, 428, 435, 463
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	154, 247
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	230, 354
SsiI	CCGC	7 cut(s)	96, 99, 157, 199, 222, 335, 436
SstI	GAGCTC	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	4 cut(s)	32, 164, 397, 446
TaiI	ACGT	2 cut(s)	44, 386
TaqI	TCGA	6 cut(s)	61, 121, 282, 315, 324, 554
TasI	AATT	2 cut(s)	230, 354
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	3 cut(s)	101, 201, 337
TscAI	CASTG	5 cut(s)	148, 402, 451, 568, 599
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	331, 488
Tsp45I	GTSAC	1 cut(s)	571
TspRI	CASTG	5 cut(s)	148, 402, 451, 568, 599
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	154, 247
XceI	RCATGY	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.