Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

4371507 .. 4376842

Gene Structure 5336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0056400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGATCTTACTAGAAACAAGGCAGAGTGCCAGAGAGGCCTATCTATTTGTGATGGATTCTCCACCGGCGAAGAGCTGGAGCATCCACACCCGACCCGAGATCATCGCCAAGTACCAGATCCTCGAGCGGGTCGGATCCGGCGCCTACTCCGACGTCTACCGCGCCCGCCGCCTCTCCGACAACCTCACCGTCGCCCTCAAGGAGGTCCACGACTACCAGTCGGCCTTCCGCGAAATCGAGGCGCTCCAGACGCTCCACAGCTGCCCCAACGTCGTCGTTTTGTACGAGTACTTCTGGCGCGAGGACGAGGACGCCGTGCTCGTGCTCGAGTTTCTGGCCAGCGACCTGGAGACTGTGATCAGAGCGGCGAAGAAGAAGGAGGGCGGGATTGGCTGCGGCGAGGTCAAGAGGTGGATGATGCAGATACTGTCTGGGATCGACGCGTGTCATCGGAATATGATCGTGCATCGGGATTTGAAGCCGAGCAATCTGTTGATCGGGGAGGGTGGCGTGCTCAAGCTGGCTGATTTCGGACAGGCAAGGATACTGCTCGAGCCTGGATATGCTCCTGATGATGAAAACCGTGAAGCATATGAGCAAAGCTCCCAAAGTCAAGCCAATGCCATTCAACCACCTGAAGCAATTCCTGTAGAAGACAATTCATTTCAAGAAGGGTACAGAATTCGGGATGGAAGTATGAGCAAAGAAGAATATTTTAGGGTCTTAGATGAGGTCAAGGCAAAAGATTTTGACAAGGATACAAATTTTCCTGATGGAGATACATCTTGTCTAGCAACGTGTACAGCCAGTGACGTAGACGATGAGGTTTTCAAGGCTTCTTATTCATACGAGCCAGAGGATGGTGGAGATGATAGAGTTGGTATGACATCCTGTGTTGGAACTCGATGGTTCAGAGCCCCTGAACTTCTCTACGGGTCAGTAGACTATGGTTTAGAGGTAGATTTATGGTCATTGGGTTGCATTTTTGCTGAGCTTTTTACCCTGCAACCACTCTTTCCCGGGAATTCTGATATCGATCAGCTCAGCAGAATCATCAGCGTTCTGGGAAATCTAACTGAGGAGATATGGCCTGAGTGCGATAAGCTTCCGGATTACAAGACAATTTCATTTAATAAAGTAGAAAACCCAATTGGTATAGGGGCCTGTCTCCCCAGTCGTTCCCCGGGTGAAGTCGCAATGGTGAGCAGACTTGTTTGCTATGACCCGGCTAGAAGAGCTACGGCAATGGAACTGCTCCAAGACAAGTATTTCAATGAAGAGCCACTTCCAGTTCCCCTATCTGAGCTGCATGTTCCCCTCGAGAAGAGTGGGCCAGATGAGGTTTCTGGTGGCTGGCGTGATTACAATGATATGGGTTCAGACTCTGATTTTGATGAATTTGCCAATGTGGAAATTACCGCCACCAAAACTGGTTCTTTCATGCAGTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

484

Amino Acids

54.32

Weight (kDa)

4.5

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	38 - 184	3.8e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	40 - 188	3.3e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	295 - 424	5.9e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	860
AccBSI	CCGCTC	2 cut(s)	127, 365
AccI	GTMKAC	3 cut(s)	156, 816, 942
AccII	CGCG	4 cut(s)	162, 231, 300, 443
AccIII	TCCGGA	1 cut(s)	1108
AciI	CCGC	9 cut(s)	127, 160, 166, 169, 229, 365, 384, 396, 1419
AclWI	GGATC	4 cut(s)	112, 129, 142, 443
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	4 cut(s)	681, 763, 1024, 1397
AcuI	CTGAAG	1 cut(s)	657
AcyI	GRCGYC	3 cut(s)	141, 153, 312
AfaI	GTAC	5 cut(s)	113, 284, 290, 677, 802
AfiI	CCNNNNNNNGG	3 cut(s)	127, 202, 860
AflIII	ACRYGT	2 cut(s)	441, 797
AgsI	TTSAA	5 cut(s)	478, 629, 668, 832, 1273
AhdI	GACNNNNNGTC	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	345, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	1134, 1166
AluBI	AGCT	9 cut(s)	75, 261, 520, 603, 994, 1042, 1105, 1238, 1306
AluI	AGCT	9 cut(s)	75, 261, 520, 603, 994, 1042, 1105, 1238, 1306
Alw21I	GWGCWC	3 cut(s)	321, 327, 516
Alw26I	GTCTC	2 cut(s)	344, 1172
AlwI	GGATC	4 cut(s)	112, 129, 142, 443
AlwNI	CAGNNNCTG	2 cut(s)	427, 1385
Ama87I	CYCGRG	7 cut(s)	95, 122, 326, 551, 1019, 1183, 1319
Aor13HI	TCCGGA	1 cut(s)	1108
AoxI	GGCC	6 cut(s)	36, 222, 336, 1088, 1161, 1331
ApeKI	GCWGC	3 cut(s)	261, 393, 1306
ApoI	RAATTY	4 cut(s)	681, 763, 1024, 1397
ArsI	GACNNNNNNTTYG	2 cut(s)	1373, 1405
Asp700I	GAANNNNTTC	1 cut(s)	642
AspLEI	GCGC	4 cut(s)	143, 164, 244, 300
AspS9I	GGNCC	3 cut(s)	205, 1161, 1331
AsuC2I	CCSGG	5 cut(s)	1020, 1021, 1184, 1185, 1226
AsuHPI	GGTGA	3 cut(s)	178, 1199, 1213
AvaI	CYCGRG	7 cut(s)	95, 122, 326, 551, 1019, 1183, 1319
AvaII	GGWCC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	919
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	3 cut(s)	321, 327, 516
BbvI	GCAGC	3 cut(s)	248, 380, 1293
BccI	CCATC	5 cut(s)	46, 683, 767, 854, 900
BceAI	ACGGC	2 cut(s)	299, 1257
BciT130I	CCWGG	2 cut(s)	347, 558
BciVI	GTATCC	2 cut(s)	537, 751
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	5 cut(s)	1020, 1021, 1184, 1185, 1226
BcoDI	GTCTC	2 cut(s)	344, 1172
BfaI	CTAG	3 cut(s)	11, 791, 1230
BfmI	CTRYAG	1 cut(s)	648
BfoI	RGCGCY	2 cut(s)	144, 245
BfuI	GTATCC	2 cut(s)	537, 751
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	6 cut(s)	169, 262, 366, 394, 397, 1307
BlpI	GCTNAGC	2 cut(s)	990, 1043
BlsI	GCNGC	6 cut(s)	170, 263, 367, 395, 398, 1308
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	7 cut(s)	347, 558, 1020, 1021, 1184, 1185, 1226
Bme18I	GGWCC	1 cut(s)	205
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmeT110I	CYCGRG	7 cut(s)	95, 122, 326, 551, 1019, 1183, 1319
BmgT120I	GGNCC	3 cut(s)	205, 1161, 1331
BmiI	GGNNCC	3 cut(s)	136, 142, 1162
BmrFI	CCNGG	7 cut(s)	347, 558, 1020, 1021, 1184, 1185, 1226
BmrI	ACTGGG	1 cut(s)	1167
BmsI	GCATC	3 cut(s)	90, 408, 475
BmuI	ACTGGG	1 cut(s)	1167
BoxI	GACNNNNGTC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	660
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BpmI	CTGGAG	3 cut(s)	97, 230, 368
Bpu1102I	GCTNAGC	2 cut(s)	990, 1043
BpuEI	CTTGAG	2 cut(s)	182, 500
BpuMI	CCSGG	5 cut(s)	1020, 1021, 1184, 1185, 1226
Bsa29I	ATCGAT	1 cut(s)	1035
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaHI	GRCGYC	3 cut(s)	141, 153, 312
BsaJI	CCNNGG	3 cut(s)	1019, 1182, 1183
BsaWI	WCCGGW	1 cut(s)	1108
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 202, 860
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	5 cut(s)	217, 807, 1173, 1289, 1435
Bse3DI	GCAATG	2 cut(s)	1203, 1251
Bse8I	GATNNNNATC	1 cut(s)	1035
BseAI	TCCGGA	1 cut(s)	1108
BseBI	CCWGG	2 cut(s)	347, 558
BseCI	ATCGAT	1 cut(s)	1035
BseDI	CCNNGG	3 cut(s)	1019, 1182, 1183
BseGI	GGATG	5 cut(s)	81, 420, 694, 865, 887
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	3 cut(s)	127, 202, 860
BseMI	GCAATG	2 cut(s)	1203, 1251
BseMII	CTCAG	5 cut(s)	981, 1057, 1068, 1083, 1293
BseNI	ACTGG	5 cut(s)	217, 807, 1173, 1289, 1435
BseRI	GAGGAG	1 cut(s)	1094
BseXI	GCAGC	3 cut(s)	248, 380, 1293
Bsh1236I	CGCG	4 cut(s)	162, 231, 300, 443
BshFI	GGCC	6 cut(s)	38, 224, 338, 1090, 1163, 1333
BshNI	GGYRCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	1035
BsiHKAI	GWGCWC	3 cut(s)	321, 327, 516
BsiHKCI	CYCGRG	7 cut(s)	95, 122, 326, 551, 1019, 1183, 1319
BsiSI	CCGG	6 cut(s)	65, 138, 1020, 1109, 1184, 1226
BslI	CCNNNNNNNGG	3 cut(s)	127, 202, 860
BsmAI	GTCTC	2 cut(s)	344, 1172
BsnI	GGCC	6 cut(s)	38, 224, 338, 1090, 1163, 1333
BsoBI	CYCGRG	7 cut(s)	95, 122, 326, 551, 1019, 1183, 1319
Bsp1286I	GDGCHC	4 cut(s)	321, 327, 516, 919
Bsp13I	TCCGGA	1 cut(s)	1108
Bsp1407I	TGTACA	1 cut(s)	800
Bsp143I	GATC	9 cut(s)	3, 99, 117, 134, 357, 435, 459, 495, 1036
Bsp1720I	GCTNAGC	2 cut(s)	990, 1043
BspACI	CCGC	9 cut(s)	127, 160, 166, 169, 229, 365, 384, 396, 1419
BspANI	GGCC	6 cut(s)	38, 224, 338, 1090, 1163, 1333
BspCNI	CTCAG	5 cut(s)	982, 1056, 1069, 1084, 1294
BspDI	ATCGAT	1 cut(s)	1035
BspEI	TCCGGA	1 cut(s)	1108
BspFNI	CGCG	4 cut(s)	162, 231, 300, 443
BspLI	GGNNCC	3 cut(s)	136, 142, 1162
BspPI	GGATC	4 cut(s)	112, 129, 142, 443
BspQI	GCTCTTC	3 cut(s)	65, 1228, 1272
BspT107I	GGYRCC	1 cut(s)	140
BsrBI	CCGCTC	2 cut(s)	127, 365
BsrDI	GCAATG	2 cut(s)	1203, 1251
BsrFI	RCCGGY	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	800
BsrI	ACTGG	5 cut(s)	217, 807, 1173, 1289, 1435
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	3 cut(s)	1019, 1182, 1183
BssMI	GATC	9 cut(s)	3, 99, 117, 134, 357, 435, 459, 495, 1036
BssNI	GRCGYC	3 cut(s)	141, 153, 312
BssSI	CACGAG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	347, 558
Bst4CI	ACNGT	4 cut(s)	190, 355, 429, 584
Bst6I	CTCTTC	4 cut(s)	65, 1228, 1272, 1319
BstACI	GRCGYC	3 cut(s)	141, 153, 312
BstAUI	TGTACA	1 cut(s)	800
BstC8I	GCNNGC	5 cut(s)	166, 340, 512, 522, 1355
BstDEI	CTNAG	6 cut(s)	724, 990, 1043, 1077, 1092, 1302
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	5 cut(s)	81, 420, 694, 865, 887
BstFNI	CGCG	4 cut(s)	162, 231, 300, 443
BstH2I	RGCGCY	2 cut(s)	144, 245
BstHHI	GCGC	4 cut(s)	143, 164, 244, 300
BstKTI	GATC	9 cut(s)	6, 102, 120, 137, 360, 438, 462, 498, 1039
BstMAI	GTCTC	2 cut(s)	344, 1172
BstMBI	GATC	9 cut(s)	3, 99, 117, 134, 357, 435, 459, 495, 1036
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 168, 250, 390, 1235
BstNI	CCWGG	2 cut(s)	347, 558
BstNSI	RCATGY	1 cut(s)	1313
BstPAI	GACNNNNGTC	1 cut(s)	444
BstSCI	CCNGG	7 cut(s)	345, 556, 1018, 1019, 1182, 1183, 1224
BstSFI	CTRYAG	1 cut(s)	648
BstUI	CGCG	4 cut(s)	162, 231, 300, 443
BstV1I	GCAGC	3 cut(s)	248, 380, 1293
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	2 cut(s)	117, 134
BstXI	CCANNNNNNTGG	1 cut(s)	346
BstYI	RGATCY	2 cut(s)	117, 134
Bsu15I	ATCGAT	1 cut(s)	1035
BsuI	GTATCC	2 cut(s)	537, 751
BsuRI	GGCC	6 cut(s)	38, 224, 338, 1090, 1163, 1333
BsuTUI	ATCGAT	1 cut(s)	1035
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	5 cut(s)	81, 420, 694, 865, 887
BtsIMutI	CAGTG	1 cut(s)	814
Cac8I	GCNNGC	5 cut(s)	166, 340, 512, 522, 1355
CaiI	CAGNNNCTG	2 cut(s)	427, 1385
CfoI	GCGC	4 cut(s)	143, 164, 244, 300
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	205, 1161, 1331
Cfr9I	CCCGGG	2 cut(s)	1019, 1183
ClaI	ATCGAT	1 cut(s)	1035
CseI	GACGC	3 cut(s)	259, 320, 449
Csp6I	GTAC	5 cut(s)	112, 283, 289, 676, 801
CviAII	CATG	2 cut(s)	1310, 1441
CviQI	GTAC	5 cut(s)	112, 283, 289, 676, 801
DdeI	CTNAG	6 cut(s)	724, 990, 1043, 1077, 1092, 1302
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	9 cut(s)	5, 101, 119, 136, 359, 437, 461, 497, 1038
DpnII	GATC	9 cut(s)	3, 99, 117, 134, 357, 435, 459, 495, 1036
DriI	GACNNNNNGTC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	4 cut(s)	65, 1228, 1272, 1319
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EarI	CTCTTC	4 cut(s)	65, 1228, 1272, 1319
Eco147I	AGGCCT	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	919
Eco32I	GATATC	1 cut(s)	1033
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	657
Eco88I	CYCGRG	7 cut(s)	95, 122, 326, 551, 1019, 1183, 1319
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	1161
EcoRI	GAATTC	2 cut(s)	681, 1024
EcoRII	CCWGG	2 cut(s)	345, 556
EcoRV	GATATC	1 cut(s)	1033
EcoT38I	GRGCYC	1 cut(s)	919
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
FaeI	CATG	2 cut(s)	1313, 1444
FalI	AAGNNNNNCTT	2 cut(s)	1269, 1301
FatI	CATG	2 cut(s)	1309, 1440
FauI	CCCGC	3 cut(s)	120, 173, 377
FauNDI	CATATG	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	357
FblI	GTMKAC	3 cut(s)	156, 816, 942
Fnu4HI	GCNGC	6 cut(s)	169, 262, 366, 394, 397, 1307
FokI	GGATG	5 cut(s)	68, 427, 701, 872, 874
FriOI	GRGCYC	1 cut(s)	919
Fsp4HI	GCNGC	6 cut(s)	169, 262, 366, 394, 397, 1307
FspBI	CTAG	3 cut(s)	11, 791, 1230
GlaI	GCGC	4 cut(s)	142, 163, 243, 299
GluI	GCNGC	6 cut(s)	169, 262, 366, 394, 397, 1307
GsuI	CTGGAG	3 cut(s)	97, 230, 368
HaeII	RGCGCY	2 cut(s)	144, 245
HaeIII	GGCC	6 cut(s)	38, 224, 338, 1090, 1163, 1333
HapII	CCGG	6 cut(s)	65, 138, 1020, 1109, 1184, 1226
HgaI	GACGC	3 cut(s)	259, 320, 449
HhaI	GCGC	4 cut(s)	143, 164, 244, 300
Hin1I	GRCGYC	3 cut(s)	141, 153, 312
Hin1II	CATG	2 cut(s)	1313, 1444
Hin6I	GCGC	4 cut(s)	141, 162, 242, 298
HinP1I	GCGC	4 cut(s)	141, 162, 242, 298
HindIII	AAGCTT	1 cut(s)	1103
HinfI	GANTC	3 cut(s)	56, 1050, 1382
HpaII	CCGG	6 cut(s)	65, 138, 1020, 1109, 1184, 1226
HphI	GGTGA	3 cut(s)	178, 1199, 1213
Hpy166II	GTNNAC	5 cut(s)	157, 208, 801, 817, 943
Hpy8I	GTNNAC	5 cut(s)	157, 208, 801, 817, 943
Hpy99I	CGWCG	5 cut(s)	155, 194, 275, 278, 443
HpyAV	CCTTC	3 cut(s)	235, 370, 665
HpyCH4III	ACNGT	4 cut(s)	190, 355, 429, 584
HpyCH4IV	ACGT	4 cut(s)	153, 270, 797, 813
HpyCH4V	TGCA	6 cut(s)	421, 466, 981, 1006, 1309, 1444
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 168, 250, 390, 1235
HpyF3I	CTNAG	6 cut(s)	724, 990, 1043, 1077, 1092, 1302
HpySE526I	ACGT	4 cut(s)	153, 270, 797, 813
Hsp92I	GRCGYC	3 cut(s)	141, 153, 312
Hsp92II	CATG	2 cut(s)	1313, 1444
HspAI	GCGC	4 cut(s)	141, 162, 242, 298
KasI	GGCGCC	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	1108
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	9 cut(s)	3, 99, 117, 134, 357, 435, 459, 495, 1036
LguI	GCTCTTC	3 cut(s)	65, 1228, 1272
LmnI	GCTCC	6 cut(s)	78, 249, 258, 571, 608, 1260
Lsp1109I	GCAGC	3 cut(s)	248, 380, 1293
LweI	GCATC	3 cut(s)	90, 408, 475
MaeI	CTAG	3 cut(s)	11, 791, 1230
MaeII	ACGT	4 cut(s)	153, 270, 797, 813
MaeIII	GTNAC	1 cut(s)	809
MalI	GATC	9 cut(s)	5, 101, 119, 136, 359, 437, 461, 497, 1038
MbiI	CCGCTC	2 cut(s)	127, 365
MboI	GATC	9 cut(s)	3, 99, 117, 134, 357, 435, 459, 495, 1036
MboII	GAAGA	8 cut(s)	82, 382, 385, 665, 719, 1245, 1289, 1336
MfeI	CAATTG	1 cut(s)	1149
MflI	RGATCY	2 cut(s)	117, 134
MhlI	GDGCHC	4 cut(s)	321, 327, 516, 919
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	9 cut(s)	642, 658, 681, 763, 1024, 1122, 1149, 1397, 1413
MluI	ACGCGT	1 cut(s)	441
MluNI	TGGCCA	1 cut(s)	338
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	1376
MmeI	TCCRAC	4 cut(s)	112, 174, 201, 877
Mox20I	TGGCCA	1 cut(s)	338
MroI	TCCGGA	1 cut(s)	1108
MroXI	GAANNNNTTC	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	1131
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	6 cut(s)	65, 138, 1020, 1109, 1184, 1226
MspR9I	CCNGG	7 cut(s)	347, 558, 1020, 1021, 1184, 1185, 1226
MunI	CAATTG	1 cut(s)	1149
MvaI	CCWGG	2 cut(s)	347, 558
MvnI	CGCG	4 cut(s)	162, 231, 300, 443
MwoI	GCNNNNNNNGC	5 cut(s)	35, 168, 250, 390, 1235
NarI	GGCGCC	1 cut(s)	141
NciI	CCSGG	5 cut(s)	1020, 1021, 1184, 1185, 1226
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	9 cut(s)	3, 99, 117, 134, 357, 435, 459, 495, 1036
NlaIII	CATG	2 cut(s)	1313, 1444
NlaIV	GGNNCC	3 cut(s)	136, 142, 1162
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	809
NspI	RCATGY	1 cut(s)	1313
PaeR7I	CTCGAG	4 cut(s)	122, 326, 551, 1319
PceI	AGGCCT	1 cut(s)	38
PciSI	GCTCTTC	3 cut(s)	65, 1228, 1272
PcsI	WCGNNNNNNNCGW	3 cut(s)	282, 312, 318
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	56, 1050
PflMI	CCANNNNNTGG	1 cut(s)	860
PkrI	GCNGC	6 cut(s)	170, 263, 367, 395, 398, 1308
PleI	GAGTC	1 cut(s)	1376
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	1376
PshAI	GACNNNNGTC	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	345, 556
PspGI	CCWGG	2 cut(s)	345, 556
PspN4I	GGNNCC	3 cut(s)	136, 142, 1162
PspPI	GGNCC	3 cut(s)	205, 1161, 1331
PspXI	VCTCGAGB	3 cut(s)	122, 326, 551
PstNI	CAGNNNCTG	2 cut(s)	427, 1385
PsuI	RGATCY	2 cut(s)	117, 134
PvuII	CAGCTG	1 cut(s)	261
RsaI	GTAC	5 cut(s)	113, 284, 290, 677, 802
RsaNI	GTAC	5 cut(s)	112, 283, 289, 676, 801
SapI	GCTCTTC	3 cut(s)	65, 1228, 1272
SaqAI	TTAA	1 cut(s)	1131
SatI	GCNGC	6 cut(s)	169, 262, 366, 394, 397, 1307
Sau3AI	GATC	9 cut(s)	3, 99, 117, 134, 357, 435, 459, 495, 1036
Sau96I	GGNCC	3 cut(s)	205, 1161, 1331
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	1 cut(s)	1376
ScrFI	CCNGG	7 cut(s)	347, 558, 1020, 1021, 1184, 1185, 1226
SduI	GDGCHC	4 cut(s)	321, 327, 516, 919
SfaNI	GCATC	3 cut(s)	90, 408, 475
SfcI	CTRYAG	1 cut(s)	648
SfoI	GGCGCC	1 cut(s)	142
Sfr274I	CTCGAG	4 cut(s)	122, 326, 551, 1319
SgrAI	CRCCGGYG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	205
SlaI	CTCGAG	4 cut(s)	122, 326, 551, 1319
SmaI	CCCGGG	2 cut(s)	1021, 1185
SmlI	CTYRAG	6 cut(s)	122, 197, 326, 515, 551, 1319
SmoI	CTYRAG	6 cut(s)	122, 197, 326, 515, 551, 1319
Sse9I	AATT	9 cut(s)	642, 658, 681, 763, 1024, 1122, 1149, 1397, 1413
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	9 cut(s)	127, 160, 166, 169, 229, 365, 384, 396, 1419
SspDI	GGCGCC	1 cut(s)	140
SspI	AATATT	1 cut(s)	713
SspMI	CTAG	3 cut(s)	11, 791, 1230
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	7 cut(s)	345, 556, 1018, 1019, 1182, 1183, 1224
TaaI	ACNGT	4 cut(s)	190, 355, 429, 584
TaiI	ACGT	4 cut(s)	156, 273, 800, 816
TaqI	TCGA	8 cut(s)	123, 237, 327, 438, 552, 904, 1035, 1320
TasI	AATT	9 cut(s)	642, 658, 681, 763, 1024, 1122, 1149, 1397, 1413
TatI	WGTACW	2 cut(s)	288, 800
TauI	GCSGC	3 cut(s)	171, 368, 399
TfiI	GAWTC	2 cut(s)	56, 1050
Tru1I	TTAA	1 cut(s)	1131
Tru9I	TTAA	1 cut(s)	1131
TscAI	CASTG	1 cut(s)	814
TseFI	GTSAC	1 cut(s)	809
TseI	GCWGC	3 cut(s)	261, 393, 1306
Tsp45I	GTSAC	1 cut(s)	809
TspDTI	ATGAA	7 cut(s)	591, 651, 834, 1116, 1290, 1410, 1429
TspMI	CCCGGG	2 cut(s)	1019, 1183
TspRI	CASTG	1 cut(s)	814
Van91I	CCANNNNNTGG	1 cut(s)	860
VpaK11BI	GGWCC	1 cut(s)	205
XagI	CCTNNNNNAGG	1 cut(s)	200
XapI	RAATTY	4 cut(s)	681, 763, 1024, 1397
XceI	RCATGY	1 cut(s)	1313
XhoI	CTCGAG	4 cut(s)	122, 326, 551, 1319
XmaI	CCCGGG	2 cut(s)	1019, 1183
XmiI	GTMKAC	3 cut(s)	156, 816, 942
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	3 cut(s)	11, 791, 1230
ZraI	GACGTC	1 cut(s)	154
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.