Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006455.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

2595 .. 3832

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006455.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgatggaggagagctgggatcggcgaaatcgtgaggctcgaggccacattctaagggccaccggccggaaggaccgctatagcaaggtctgcacaaccaaaggccccagagaccatcgcgtccggctcgccgcccacacagccattcaattctacgacgtgcaagactggcttggatacgaccggcccagcatggccgtcgattggctcatcaagaaagccaaggccgcaattgacaagctgccgccgtggaacccgaactcaatttctgttcaaacaacatcttctctgacggtgccgatatccgccgcgcaggacacagaacgcgagcctccatttctcgatggtggaggctctgagttctttgtttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

124

Amino Acids

14.12

Weight (kDa)

9.03

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	295
AccII	CGCG	3 cut(s)	120, 311, 327
AciI	CCGC	6 cut(s)	76, 132, 228, 245, 306, 309
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	2 cut(s)	64, 195
AfiI	CCNNNNNNNGG	2 cut(s)	66, 204
AgsI	TTSAA	2 cut(s)	149, 275
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	2 cut(s)	15, 241
AluI	AGCT	2 cut(s)	15, 241
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	7 cut(s)	43, 57, 64, 103, 185, 195, 225
ApeKI	GCWGC	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	4 cut(s)	57, 73, 104, 186
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	2 cut(s)	123, 338
BceAI	ACGGC	2 cut(s)	182, 232
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciVI	GTATCC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	5 cut(s)	132, 228, 242, 245, 309
BlsI	GCNGC	5 cut(s)	133, 229, 243, 246, 310
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	39
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	4 cut(s)	57, 73, 104, 186
BmiI	GGNNCC	3 cut(s)	106, 254, 297
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	222, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 204
Bse118I	RCCGGY	2 cut(s)	62, 183
Bse1I	ACTGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	222, 248
BseLI	CCNNNNNNNGG	2 cut(s)	66, 204
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	228
BseYI	CCCAGC	2 cut(s)	15, 188
BsgI	GTGCAG	1 cut(s)	76
Bsh1236I	CGCG	3 cut(s)	120, 311, 327
Bsh1285I	CGRYCG	2 cut(s)	67, 184
BshFI	GGCC	7 cut(s)	45, 59, 66, 105, 187, 197, 227
BshNI	GGYRCC	1 cut(s)	295
BsiEI	CGRYCG	2 cut(s)	67, 184
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	4 cut(s)	63, 67, 124, 184
BslI	CCNNNNNNNGG	2 cut(s)	66, 204
BsmAI	GTCTC	1 cut(s)	105
BsnI	GGCC	7 cut(s)	45, 59, 66, 105, 187, 197, 227
Bso31I	GGTCTC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	6 cut(s)	76, 132, 228, 245, 306, 309
BspANI	GGCC	7 cut(s)	45, 59, 66, 105, 187, 197, 227
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	3 cut(s)	120, 311, 327
BspLI	GGNNCC	3 cut(s)	106, 254, 297
BspPI	GGATC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	105
BsrFI	RCCGGY	2 cut(s)	62, 183
BsrI	ACTGG	1 cut(s)	173
BssAI	RCCGGY	2 cut(s)	62, 183
BssECI	CCNNGG	2 cut(s)	222, 248
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	129, 329
BstDEI	CTNAG	2 cut(s)	53, 357
BstDSI	CCRYGG	1 cut(s)	248
BstFNI	CGCG	3 cut(s)	120, 311, 327
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	19
BstMCI	CGRYCG	2 cut(s)	67, 184
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 140, 169, 227
BstSFI	CTRYAG	1 cut(s)	79
BstUI	CGCG	3 cut(s)	120, 311, 327
BstV1I	GCAGC	1 cut(s)	228
BstZI	CGGCCG	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	7 cut(s)	45, 59, 66, 105, 187, 197, 227
BtgI	CCRYGG	1 cut(s)	248
BtgZI	GCGATG	1 cut(s)	101
BtrI	CACGTC	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	129, 329
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	2 cut(s)	62, 183
Cfr13I	GGNCC	4 cut(s)	57, 73, 104, 186
CseI	GACGC	1 cut(s)	109
CviAII	CATG	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	53, 357
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	2 cut(s)	64, 195
EagI	CGGCCG	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	295
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	105
Eco32I	GATATC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	73
Eco52I	CGGCCG	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRV	GATATC	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	196
FaiI	YATR	2 cut(s)	81, 194
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	132, 228, 242, 245, 309
Fsp4HI	GCNGC	5 cut(s)	132, 228, 242, 245, 309
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	5 cut(s)	132, 228, 242, 245, 309
GsaI	CCCAGC	2 cut(s)	19, 192
HaeIII	GGCC	7 cut(s)	45, 59, 66, 105, 187, 197, 227
HapII	CCGG	4 cut(s)	63, 67, 124, 184
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HpaII	CCGG	4 cut(s)	63, 67, 124, 184
Hpy188I	TCNGA	2 cut(s)	291, 358
Hpy188III	TCNNGA	3 cut(s)	32, 214, 341
Hpy99I	CGWCG	2 cut(s)	161, 203
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	93, 163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 140, 169, 227
HpyF3I	CTNAG	2 cut(s)	53, 357
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	8 cut(s)	76, 80, 121, 137, 154, 197, 202, 299
Lsp1109I	GCAGC	1 cut(s)	228
MaeII	ACGT	1 cut(s)	159
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	276
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	3 cut(s)	149, 231, 264
MnlI	CCTC	4 cut(s)	28, 35, 342, 344
MspI	CCGG	4 cut(s)	63, 67, 124, 184
MunI	CAATTG	1 cut(s)	231
MvnI	CGCG	3 cut(s)	120, 311, 327
MwoI	GCNNNNNNNGC	4 cut(s)	90, 140, 169, 227
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	3 cut(s)	106, 254, 297
PaeR7I	CTCGAG	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	28, 37
PkrI	GCNGC	5 cut(s)	133, 229, 243, 246, 310
PspFI	CCCAGC	2 cut(s)	15, 188
PspN4I	GGNNCC	3 cut(s)	106, 254, 297
PspPI	GGNCC	4 cut(s)	57, 73, 104, 186
PspXI	VCTCGAGB	1 cut(s)	39
SatI	GCNGC	5 cut(s)	132, 228, 242, 245, 309
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	4 cut(s)	57, 73, 104, 186
SetI	ASST	4 cut(s)	17, 90, 162, 243
SfcI	CTRYAG	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	149, 231, 264
SsiI	CCGC	6 cut(s)	76, 132, 228, 245, 306, 309
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	40, 201, 342
TasI	AATT	3 cut(s)	149, 231, 264
TauI	GCSGC	4 cut(s)	134, 230, 247, 311
TseI	GCWGC	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.