Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

10292590 .. 10302521

Gene Structure 9932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTTCCTATCGGTGTCGGTGGTTGACGTGGCGCAGCCGGGGCCGGATAGCCTATCGCGGGGCAGCGTGTCACATATAGATCTAGGTTGGAAACGTCGTACTTTGGCTTGGAGTAGCCAAGTTTTAGGGTTAGGATTCGGACCCGAATCTGGGTATGTGTCGCATGCCGACTTTGCGAAGCACAAAGAGGACCACGCGACACTTGTTAACCTTAACTCGGGAGGCAAGTCAGCTAACGAAATCGTGGAGGCTCAAGGCCACATTCTAAGGGCTACCGGTCGGAAGGACAGCCACGGCAACGTTTGCACCACCAAAGGCCCCGGGATCGCGAAGATCGGGCTCGTCACCCACACCGCCATTCAATTCTACGACATGCAGGACCGGCTTGGATACGACCAGCCTAGCAAGGTCGTCGATTGGCCGCGCAGACACGCGAACGTGAGCCTCAATTTCTCGATGGTGGAGGCTCCGAGTCCTTTGTTTACTAATTGGCGAGGCACAATGGTGGGTAGCAGCAGAGTGGCGAAGCTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

178

Amino Acids

19.37

Weight (kDa)

9.37

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	93 - 140	1.1e-10	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	58, 197, 329, 424, 434
AciI	CCGC	3 cut(s)	58, 354, 422
AclI	AACGTT	1 cut(s)	300
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	419
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	4 cut(s)	58, 149, 150, 217
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	362
AjiI	CACGTC	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	2 cut(s)	233, 529
AluI	AGCT	2 cut(s)	233, 529
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	2 cut(s)	217, 320
AoxI	GGCC	4 cut(s)	41, 256, 316, 419
ApeKI	GCWGC	3 cut(s)	34, 63, 513
AsiGI	ACCGGT	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	34, 426
AspS9I	GGNCC	5 cut(s)	41, 140, 190, 317, 379
AsuC2I	CCSGG	3 cut(s)	39, 321, 322
AsuHPI	GGTGA	1 cut(s)	337
AvaI	CYCGRG	2 cut(s)	217, 320
AvaII	GGWCC	3 cut(s)	140, 190, 379
BanII	GRGCYC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	46, 75, 525
BccI	CCATC	1 cut(s)	451
BceAI	ACGGC	1 cut(s)	310
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciVI	GTATCC	1 cut(s)	383
BcnI	CCSGG	3 cut(s)	39, 321, 322
BfaI	CTAG	2 cut(s)	83, 402
BfuI	GTATCC	1 cut(s)	383
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	4 cut(s)	35, 64, 422, 514
BlsI	GCNGC	4 cut(s)	36, 65, 423, 515
Bme1390I	CCNGG	3 cut(s)	39, 321, 322
Bme18I	GGWCC	3 cut(s)	140, 190, 379
BmeT110I	CYCGRG	2 cut(s)	217, 320
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	5 cut(s)	41, 140, 190, 317, 379
BmiI	GGNNCC	4 cut(s)	42, 142, 319, 468
BmrFI	CCNGG	3 cut(s)	39, 321, 322
BpuEI	CTTGAG	1 cut(s)	237
BpuMI	CCSGG	3 cut(s)	39, 321, 322
BsaJI	CCNNGG	4 cut(s)	38, 292, 319, 320
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 149, 150, 217
Bse118I	RCCGGY	2 cut(s)	275, 381
BseDI	CCNNGG	4 cut(s)	38, 292, 319, 320
BseLI	CCNNNNNNNGG	4 cut(s)	58, 149, 150, 217
BseXI	GCAGC	3 cut(s)	46, 75, 525
Bsh1236I	CGCG	5 cut(s)	58, 197, 329, 424, 434
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	4 cut(s)	43, 258, 318, 421
BshTI	ACCGGT	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	280
BsiHKCI	CYCGRG	2 cut(s)	217, 320
BsiSI	CCGG	5 cut(s)	38, 44, 276, 321, 382
BslI	CCNNNNNNNGG	4 cut(s)	58, 149, 150, 217
BsnI	GGCC	4 cut(s)	43, 258, 318, 421
BsoBI	CYCGRG	2 cut(s)	217, 320
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	79, 324, 333
Bsp68I	TCGCGA	1 cut(s)	329
BspACI	CCGC	3 cut(s)	58, 354, 422
BspANI	GGCC	4 cut(s)	43, 258, 318, 421
BspFNI	CGCG	5 cut(s)	58, 197, 329, 424, 434
BspLI	GGNNCC	4 cut(s)	42, 142, 319, 468
BspPI	GGATC	1 cut(s)	332
BsrFI	RCCGGY	2 cut(s)	275, 381
BssAI	RCCGGY	2 cut(s)	275, 381
BssECI	CCNNGG	4 cut(s)	38, 292, 319, 320
BssMI	GATC	3 cut(s)	79, 324, 333
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	266
BstDSI	CCRYGG	1 cut(s)	292
BstFNI	CGCG	5 cut(s)	58, 197, 329, 424, 434
BstHHI	GCGC	2 cut(s)	34, 426
BstKTI	GATC	3 cut(s)	82, 327, 336
BstMBI	GATC	3 cut(s)	79, 324, 333
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 173, 303, 382
BstNSI	RCATGY	2 cut(s)	167, 376
BstSCI	CCNGG	3 cut(s)	37, 319, 320
BstUI	CGCG	5 cut(s)	58, 197, 329, 424, 434
BstV1I	GCAGC	3 cut(s)	46, 75, 525
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	4 cut(s)	43, 258, 318, 421
BtgI	CCRYGG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	28
BtuMI	TCGCGA	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	2 cut(s)	34, 426
Cfr10I	RCCGGY	2 cut(s)	275, 381
Cfr13I	GGNCC	5 cut(s)	41, 140, 190, 317, 379
Cfr9I	CCCGGG	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	99
CspAI	ACCGGT	1 cut(s)	275
CviAII	CATG	2 cut(s)	164, 373
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	3 cut(s)	81, 326, 335
DpnII	GATC	3 cut(s)	79, 324, 333
EaeI	YGGCCR	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	3 cut(s)	140, 190, 379
Eco88I	CYCGRG	2 cut(s)	217, 320
EcoO109I	RGGNCCY	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	342
FaeI	CATG	2 cut(s)	167, 376
FaiI	YATR	5 cut(s)	75, 77, 156, 165, 374
FatI	CATG	2 cut(s)	163, 372
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	35, 64, 422, 514
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	4 cut(s)	35, 64, 422, 514
FspBI	CTAG	2 cut(s)	83, 402
GlaI	GCGC	2 cut(s)	33, 425
GluI	GCNGC	4 cut(s)	35, 64, 422, 514
HaeIII	GGCC	4 cut(s)	43, 258, 318, 421
HapII	CCGG	5 cut(s)	38, 44, 276, 321, 382
HhaI	GCGC	2 cut(s)	34, 426
Hin1II	CATG	2 cut(s)	167, 376
Hin6I	GCGC	2 cut(s)	32, 424
HinP1I	GCGC	2 cut(s)	32, 424
HincII	GTYRAC	2 cut(s)	25, 208
HindII	GTYRAC	2 cut(s)	25, 208
HinfI	GANTC	3 cut(s)	135, 146, 472
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	5 cut(s)	38, 44, 276, 321, 382
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	3 cut(s)	25, 208, 483
Hpy188I	TCNGA	3 cut(s)	140, 282, 471
Hpy188III	TCNNGA	3 cut(s)	219, 328, 454
Hpy8I	GTNNAC	3 cut(s)	25, 208, 483
Hpy99I	CGWCG	2 cut(s)	99, 416
HpyAV	CCTTC	1 cut(s)	277
HpyCH4IV	ACGT	4 cut(s)	27, 94, 300, 438
HpyCH4V	TGCA	2 cut(s)	306, 376
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 173, 303, 382
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	4 cut(s)	27, 94, 300, 438
Hsp92II	CATG	2 cut(s)	167, 376
HspAI	GCGC	2 cut(s)	32, 424
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	79, 324, 333
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	9 cut(s)	51, 57, 135, 289, 334, 362, 395, 410, 517
Lsp1109I	GCAGC	3 cut(s)	46, 75, 525
MaeI	CTAG	2 cut(s)	83, 402
MaeII	ACGT	4 cut(s)	27, 94, 300, 438
MaeIII	GTNAC	2 cut(s)	69, 343
MalI	GATC	3 cut(s)	81, 326, 335
MboI	GATC	3 cut(s)	79, 324, 333
MboII	GAAGA	1 cut(s)	343
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	3 cut(s)	362, 448, 487
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	2 cut(s)	68, 260
MnlI	CCTC	6 cut(s)	181, 215, 241, 455, 457, 488
MseI	TTAA	2 cut(s)	207, 213
MslI	CAYNNNNRTG	1 cut(s)	503
MspI	CCGG	5 cut(s)	38, 44, 276, 321, 382
MspR9I	CCNGG	3 cut(s)	39, 321, 322
MvnI	CGCG	5 cut(s)	58, 197, 329, 424, 434
MwoI	GCNNNNNNNGC	4 cut(s)	40, 173, 303, 382
NciI	CCSGG	3 cut(s)	39, 321, 322
NdeII	GATC	3 cut(s)	79, 324, 333
NlaIII	CATG	2 cut(s)	167, 376
NlaIV	GGNNCC	4 cut(s)	42, 142, 319, 468
NmuCI	GTSAC	2 cut(s)	69, 343
NruI	TCGCGA	1 cut(s)	329
NspI	RCATGY	2 cut(s)	167, 376
OliI	CACNNNNGTG	1 cut(s)	503
PaeI	GCATGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	135, 146
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	36, 65, 423, 515
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
Psp1406I	AACGTT	1 cut(s)	300
PspN4I	GGNNCC	4 cut(s)	42, 142, 319, 468
PspPI	GGNCC	5 cut(s)	41, 140, 190, 317, 379
PsuI	RGATCY	1 cut(s)	79
RruI	TCGCGA	1 cut(s)	329
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	2 cut(s)	207, 213
SatI	GCNGC	4 cut(s)	35, 64, 422, 514
Sau3AI	GATC	3 cut(s)	79, 324, 333
Sau96I	GGNCC	5 cut(s)	41, 140, 190, 317, 379
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	3 cut(s)	39, 321, 322
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	9 cut(s)	30, 88, 97, 213, 235, 303, 411, 441, 531
SinI	GGWCC	3 cut(s)	140, 190, 379
SmaI	CCCGGG	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	3 cut(s)	362, 448, 487
SsiI	CCGC	3 cut(s)	58, 354, 422
SspMI	CTAG	2 cut(s)	83, 402
StyD4I	CCNGG	3 cut(s)	37, 319, 320
TaiI	ACGT	4 cut(s)	30, 97, 303, 441
TaqI	TCGA	2 cut(s)	414, 455
TasI	AATT	3 cut(s)	362, 448, 487
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	135, 146
Tru1I	TTAA	2 cut(s)	207, 213
Tru9I	TTAA	2 cut(s)	207, 213
TseFI	GTSAC	2 cut(s)	69, 343
TseI	GCWGC	3 cut(s)	34, 63, 513
Tsp45I	GTSAC	2 cut(s)	69, 343
TspMI	CCCGGG	1 cut(s)	320
VpaK11BI	GGWCC	3 cut(s)	140, 190, 379
XceI	RCATGY	2 cut(s)	167, 376
XmaI	CCCGGG	1 cut(s)	320
XspI	CTAG	2 cut(s)	83, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.