Rmu_sc0001353.1_g000029
TCP Family

Transcription factor TCP4-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001353.1
Physical Location & Seq
Reverse (-)
84744 .. 87298
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001353.1_g000029.1.cds

Sequence Viewer

Length: 906 bp
atggaatatgcaggaagaaaaatgggggagacccacaacaacctccaccaccgcgcaatgacgtcgtcctccgctgcttctcgattgggtttgggtataaggactgcttcttcctccatcgccatcgaaatcgtggaggctcgagaccacattctaagggccaccgaccggaaggactgccatagcaaggtctataccgccaaaggccccagggaccaccgcgttccgctcgccgcccacaccaccattcaattctactacgtgcaagaccggctcggatatgaccggcccagcaaggcattcgattgggtcatcaagaaagccaaggccgcaatcgacgaactgccgccgtggaacccgaactcaatttctgttcagacaacatcttctccgacagtgccgatatccgtcgcgcaggacacgcagaacgcgagcctccatttctcgatggtggaggctctgagctctttgtttgctaatcggcgaggcgcaatggtgggtagcagcggagtggctgagctggtgaatcagaacagctcaaattttctacagtccacacgagcctccaagctccagcccaacccacctgcaccggcgctgcatcgaccaaccaagagcacagaccggcctcgtccagccccacagaccgccttcatttccctccagcaccggagatcgaattcgtcgccgttccagatcagcaccatacccgtcccggagaagactcagttgaacctgacctcggcgcagcaaatccggccaagtcccggtgccccaaacctcttggctggtgcttcctccgtcagccggcctcaattaccaggccgcacacctctactctcgtcctgctcgcgggcgcggcctcccaatcttatcagctcaacgcagcagcctgccagaaaataa

Protein Analysis

301

Amino Acids

32.74

Weight (kDa)

10.78

Isoelectric Point (pI)

59.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca FvH4_3g08160 FvH4_3g18740
malus_domestica MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis pycom03g18430 pycom11g22850
rosa_chinensis RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 595
AatII GACGTC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 595
AccB1I GGYRCC 1 cut(s) 770
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 6 cut(s) 54, 222, 413, 431, 853, 859
AcoI YGGCCR 1 cut(s) 758
AcsI RAATTY 2 cut(s) 541, 679
AcyI GRCGYC 1 cut(s) 62
AfiI CCNNNNNNNGG 6 cut(s) 168, 187, 742, 767, 807, 852
AgsI TTSAA 2 cut(s) 251, 733
AjnI CCWGG 2 cut(s) 209, 820
AluBI AGCT 5 cut(s) 465, 520, 537, 571, 879
AluI AGCT 5 cut(s) 465, 520, 537, 571, 879
Alw21I GWGCWC 2 cut(s) 467, 620
Alw26I GTCTC 2 cut(s) 23, 138
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 9 cut(s) 159, 205, 287, 327, 626, 758, 809, 823, 860
ApeKI GCWGC 6 cut(s) 74, 504, 598, 748, 886, 889
ApoI RAATTY 2 cut(s) 541, 679
AspLEI GCGC 6 cut(s) 56, 415, 491, 598, 748, 859
AspS9I GGNCC 4 cut(s) 159, 206, 214, 288
AsuC2I CCSGG 2 cut(s) 716, 768
AsuHPI GGTGA 1 cut(s) 535
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 775
BanI GGYRCC 1 cut(s) 770
BanII GRGCYC 1 cut(s) 467
BauI CACGAG 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 728
Bbv12I GWGCWC 2 cut(s) 467, 620
BbvI GCAGC 6 cut(s) 61, 516, 585, 760, 898, 901
BccI CCATC 3 cut(s) 125, 131, 442
BceAI ACGGC 2 cut(s) 334, 673
BcgI CGANNNNNNTGC 4 cut(s) 45, 79, 283, 317
BciT130I CCWGG 2 cut(s) 211, 822
BcnI CCSGG 2 cut(s) 716, 768
BcoDI GTCTC 2 cut(s) 23, 138
BfmI CTRYAG 1 cut(s) 548
BfoI RGCGCY 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 595
BlpI GCTNAGC 1 cut(s) 516
Bme1390I CCNGG 4 cut(s) 211, 716, 768, 822
Bme18I GGWCC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 4 cut(s) 159, 206, 214, 288
BmiI GGNNCC 4 cut(s) 208, 215, 356, 772
BmrFI CCNGG 4 cut(s) 211, 716, 768, 822
BmsI GCATC 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 728
BpmI CTGGAG 2 cut(s) 557, 647
Bpu1102I GCTNAGC 1 cut(s) 516
BpuMI CCSGG 2 cut(s) 716, 768
BsaAI YACGTR 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 2 cut(s) 23, 138
BsaJI CCNNGG 5 cut(s) 209, 210, 324, 350, 741
BsaWI WCCGGW 2 cut(s) 168, 669
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 6 cut(s) 168, 187, 742, 767, 807, 852
Bse118I RCCGGY 5 cut(s) 270, 285, 592, 624, 807
Bse3DI GCAATG 2 cut(s) 63, 498
BseBI CCWGG 2 cut(s) 211, 822
BseDI CCNNGG 5 cut(s) 209, 210, 324, 350, 741
BseLI CCNNNNNNNGG 6 cut(s) 168, 187, 742, 767, 807, 852
BseMI GCAATG 2 cut(s) 63, 498
BseMII CTCAG 3 cut(s) 452, 507, 740
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 6 cut(s) 61, 516, 585, 760, 898, 901
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 6 cut(s) 54, 222, 413, 431, 853, 859
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 9 cut(s) 161, 207, 289, 329, 628, 760, 811, 825, 862
BshNI GGYRCC 1 cut(s) 770
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 467, 620
BsiHKCI CYCGRG 1 cut(s) 141
BslFI GGGAC 3 cut(s) 227, 698, 750
BslI CCNNNNNNNGG 6 cut(s) 168, 187, 742, 767, 807, 852
BsmAI GTCTC 2 cut(s) 23, 138
BsmFI GGGAC 3 cut(s) 227, 698, 750
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 9 cut(s) 161, 207, 289, 329, 628, 760, 811, 825, 862
Bso31I GGTCTC 2 cut(s) 23, 138
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 3 cut(s) 467, 620, 775
Bsp143I GATC 2 cut(s) 674, 696
Bsp1720I GCTNAGC 1 cut(s) 516
BspANI GGCC 9 cut(s) 161, 207, 289, 329, 628, 760, 811, 825, 862
BspCNI CTCAG 3 cut(s) 453, 508, 739
BspFNI CGCG 6 cut(s) 54, 222, 413, 431, 853, 859
BspLI GGNNCC 4 cut(s) 208, 215, 356, 772
BspMI ACCTGC 1 cut(s) 595
BspT107I GGYRCC 1 cut(s) 770
BspTNI GGTCTC 2 cut(s) 23, 138
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 2 cut(s) 63, 498
BsrFI RCCGGY 5 cut(s) 270, 285, 592, 624, 807
BssAI RCCGGY 5 cut(s) 270, 285, 592, 624, 807
BssECI CCNNGG 5 cut(s) 209, 210, 324, 350, 741
BssMI GATC 2 cut(s) 674, 696
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 558
BssT1I CCWWGG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 211, 822
Bst4CI ACNGT 2 cut(s) 397, 552
BstACI GRCGYC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 262
BstC8I GCNNGC 6 cut(s) 231, 433, 809, 851, 855, 894
BstDEI CTNAG 4 cut(s) 155, 461, 516, 726
BstDSI CCRYGG 1 cut(s) 350
BstFNI CGCG 6 cut(s) 54, 222, 413, 431, 853, 859
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 6 cut(s) 56, 415, 491, 598, 748, 859
BstKTI GATC 2 cut(s) 677, 699
BstMAI GTCTC 2 cut(s) 23, 138
BstMBI GATC 2 cut(s) 674, 696
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 5 cut(s) 271, 329, 421, 757, 859
BstNI CCWGG 2 cut(s) 211, 822
BstSCI CCNGG 4 cut(s) 209, 714, 766, 820
BstSFI CTRYAG 1 cut(s) 548
BstSLI GKGCMC 1 cut(s) 775
BstUI CGCG 6 cut(s) 54, 222, 413, 431, 853, 859
BstV1I GCAGC 6 cut(s) 61, 516, 585, 760, 898, 901
BstV2I GAAGAC 1 cut(s) 728
BsuRI GGCC 9 cut(s) 161, 207, 289, 329, 628, 760, 811, 825, 862
BtgI CCRYGG 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 402
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 6 cut(s) 231, 433, 809, 851, 855, 894
CfoI GCGC 6 cut(s) 56, 415, 491, 598, 748, 859
Cfr10I RCCGGY 5 cut(s) 270, 285, 592, 624, 807
Cfr13I GGNCC 4 cut(s) 159, 206, 214, 288
DdeI CTNAG 4 cut(s) 155, 461, 516, 726
DpnI GATC 2 cut(s) 676, 698
DpnII GATC 2 cut(s) 674, 696
EaeI YGGCCR 1 cut(s) 758
Ecl136II GAGCTC 1 cut(s) 465
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 467
Eco31I GGTCTC 2 cut(s) 23, 138
Eco32I GATATC 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 679
EcoRII CCWGG 2 cut(s) 209, 820
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 324
FaiI YATR 6 cut(s) 9, 98, 183, 195, 282, 707
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FaqI GGGAC 3 cut(s) 227, 698, 750
FauI CCCGC 1 cut(s) 846
FriOI GRGCYC 1 cut(s) 467
GlaI GCGC 6 cut(s) 55, 414, 490, 597, 747, 858
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 2 cut(s) 557, 647
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 9 cut(s) 161, 207, 289, 329, 628, 760, 811, 825, 862
HhaI GCGC 6 cut(s) 56, 415, 491, 598, 748, 859
Hin1I GRCGYC 1 cut(s) 62
Hin6I GCGC 6 cut(s) 54, 413, 489, 596, 746, 857
HinP1I GCGC 6 cut(s) 54, 413, 489, 596, 746, 857
HinfI GANTC 2 cut(s) 526, 724
HphI GGTGA 1 cut(s) 535
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 5 cut(s) 278, 378, 393, 462, 531
Hpy188III TCNNGA 5 cut(s) 81, 143, 316, 445, 694
Hpy8I GTNNAC 1 cut(s) 555
Hpy99I CGWCG 4 cut(s) 67, 341, 413, 688
HpyAV CCTTC 2 cut(s) 166, 661
HpyCH4III ACNGT 2 cut(s) 397, 552
HpyCH4IV ACGT 2 cut(s) 62, 261
HpyCH4V TGCA 4 cut(s) 11, 265, 590, 601
HpyF10VI GCNNNNNNNGC 5 cut(s) 271, 329, 421, 757, 859
HpyF3I CTNAG 4 cut(s) 155, 461, 516, 726
HpySE526I ACGT 2 cut(s) 62, 261
Hsp92I GRCGYC 1 cut(s) 62
HspAI GCGC 6 cut(s) 54, 413, 489, 596, 746, 857
KroI GCCGGC 1 cut(s) 807
KroNI GCCGGC 1 cut(s) 809
Kzo9I GATC 2 cut(s) 674, 696
LmnI GCTCC 1 cut(s) 576
Lsp1109I GCAGC 6 cut(s) 61, 516, 585, 760, 898, 901
LweI GCATC 1 cut(s) 610
MaeII ACGT 2 cut(s) 62, 261
MalI GATC 2 cut(s) 676, 698
MbiI CCGCTC 1 cut(s) 229
MboI GATC 2 cut(s) 674, 696
MboII GAAGA 4 cut(s) 27, 102, 378, 733
MhlI GDGCHC 3 cut(s) 467, 620, 775
MluCI AATT 5 cut(s) 251, 366, 541, 679, 815
MlyI GAGTC 1 cut(s) 718
MmeI TCCRAC 1 cut(s) 416
MroNI GCCGGC 1 cut(s) 807
MspA1I CMGCKG 2 cut(s) 74, 507
MspR9I CCNGG 4 cut(s) 211, 716, 768, 822
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 2 cut(s) 211, 822
MvnI CGCG 6 cut(s) 54, 222, 413, 431, 853, 859
MwoI GCNNNNNNNGC 5 cut(s) 271, 329, 421, 757, 859
NaeI GCCGGC 1 cut(s) 809
NciI CCSGG 2 cut(s) 716, 768
NdeII GATC 2 cut(s) 674, 696
NgoMIV GCCGGC 1 cut(s) 807
NlaIV GGNNCC 4 cut(s) 208, 215, 356, 772
NmeAIII GCCGAG 1 cut(s) 722
PaeR7I CTCGAG 1 cut(s) 141
PaqCI CACCTGC 1 cut(s) 595
PasI CCCWGGG 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PctI GAATGC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 809
PfeI GAWTC 1 cut(s) 526
PflFI GACNNNGTC 1 cut(s) 64
PfoI TCCNGGA 1 cut(s) 714
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
Ppu21I YACGTR 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 209, 820
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 2 cut(s) 209, 820
PspN4I GGNNCC 4 cut(s) 208, 215, 356, 772
PspPI GGNCC 4 cut(s) 159, 206, 214, 288
PsyI GACNNNGTC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 467
Sau3AI GATC 2 cut(s) 674, 696
Sau96I GGNCC 4 cut(s) 159, 206, 214, 288
SchI GAGTC 1 cut(s) 718
ScrFI CCNGG 4 cut(s) 211, 716, 768, 822
SduI GDGCHC 3 cut(s) 467, 620, 775
SfaNI GCATC 1 cut(s) 610
SfcI CTRYAG 1 cut(s) 548
Sfr274I CTCGAG 1 cut(s) 141
SgrAI CRCCGGYG 1 cut(s) 592
SinI GGWCC 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 5 cut(s) 251, 366, 541, 679, 815
SstI GAGCTC 1 cut(s) 467
StyD4I CCNGG 4 cut(s) 209, 714, 766, 820
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 397, 552
TaiI ACGT 2 cut(s) 65, 264
TaqI TCGA 8 cut(s) 82, 126, 142, 303, 336, 446, 604, 677
TasI AATT 5 cut(s) 251, 366, 541, 679, 815
TauI GCSGC 5 cut(s) 236, 332, 349, 828, 862
TfiI GAWTC 1 cut(s) 526
TscAI CASTG 1 cut(s) 402
TseI GCWGC 6 cut(s) 74, 504, 598, 748, 886, 889
TspDTI ATGAA 1 cut(s) 643
TspGWI ACGGA 2 cut(s) 397, 790
TspRI CASTG 1 cut(s) 402
Tth111I GACNNNGTC 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 541, 679
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XhoI CTCGAG 1 cut(s) 141
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.