Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001684.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

59568 .. 60191

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001684.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgggggagagccacaacaacctccaccaccgggcaatgacgtcgtcctctgctgcttctcaattgggtttggggataaggactacttcttcctccaccaccagcgaaatcgtggaggctcgaggccacattctaagggccaccggccagaaggatcgccacagcaaggtctgcactgctaaaggccccagggaccatcgcgccgtcgattggctcatcaagaaagccaaggccgcaatcgacgagctgctgccgtggaacccgaactcaatttatgttcagacaacatcttcttcgacagtgccgatatccgccgcccaggacaagcagaacgcgaccctccatttctcgatggtggaggctccgagttctttgtctgctaatcggcgaggcgcaatggtgggtagcaacggagtggcggagctagtgaatcagaacagctcaaattttctgcaggtgaggatggtgtggaggctgaagttgttaatctttgtctgcctacaattgcctcttatcgaagttgggctagaggccaaagttgtcagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

182

Amino Acids

19.81

Weight (kDa)

10.01

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	445
AatII	GACGTC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	445
AccII	CGCG	2 cut(s)	201, 335
AciI	CCGC	4 cut(s)	234, 312, 315, 419
AclWI	GGATC	1 cut(s)	162
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	31, 166, 210
AjnI	CCWGG	2 cut(s)	188, 318
AluBI	AGCT	3 cut(s)	247, 424, 441
AluI	AGCT	3 cut(s)	247, 424, 441
AlwI	GGATC	1 cut(s)	162
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	6 cut(s)	124, 138, 145, 184, 231, 531
ApeKI	GCWGC	3 cut(s)	53, 247, 250
ApoI	RAATTY	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	203, 395
AspS9I	GGNCC	3 cut(s)	138, 185, 193
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	40, 234, 237
BccI	CCATC	3 cut(s)	204, 346, 457
BceAI	ACGGC	2 cut(s)	188, 238
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	2 cut(s)	190, 320
BcnI	CCSGG	1 cut(s)	32
BfaI	CTAG	2 cut(s)	425, 527
BfmI	CTRYAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	5 cut(s)	54, 234, 248, 251, 315
BlsI	GCNGC	5 cut(s)	55, 235, 249, 252, 316
Bme1390I	CCNGG	3 cut(s)	32, 190, 320
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	3 cut(s)	138, 185, 193
BmiI	GGNNCC	4 cut(s)	187, 194, 260, 363
BmrFI	CCNGG	3 cut(s)	32, 190, 320
BpuMI	CCSGG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	5 cut(s)	188, 189, 228, 254, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 166, 210
Bse118I	RCCGGY	1 cut(s)	143
Bse3DI	GCAATG	2 cut(s)	42, 402
BseBI	CCWGG	2 cut(s)	190, 320
BseDI	CCNNGG	5 cut(s)	188, 189, 228, 254, 318
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	3 cut(s)	31, 166, 210
BseMI	GCAATG	2 cut(s)	42, 402
BseXI	GCAGC	3 cut(s)	40, 234, 237
BsgI	GTGCAG	1 cut(s)	157
Bsh1236I	CGCG	2 cut(s)	201, 335
BshFI	GGCC	6 cut(s)	126, 140, 147, 186, 233, 533
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	31, 144
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	31, 166, 210
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	6 cut(s)	126, 140, 147, 186, 233, 533
BsoBI	CYCGRG	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	4 cut(s)	234, 312, 315, 419
BspANI	GGCC	6 cut(s)	126, 140, 147, 186, 233, 533
BspFNI	CGCG	2 cut(s)	201, 335
BspLI	GGNNCC	4 cut(s)	187, 194, 260, 363
BspMAI	CTGCAG	1 cut(s)	456
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	1 cut(s)	162
BsrDI	GCAATG	2 cut(s)	42, 402
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	5 cut(s)	188, 189, 228, 254, 318
BssMI	GATC	1 cut(s)	154
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	190, 320
Bst4CI	ACNGT	1 cut(s)	301
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	468
BstFNI	CGCG	2 cut(s)	201, 335
BstHHI	GCGC	2 cut(s)	203, 395
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 233
BstNI	CCWGG	2 cut(s)	190, 320
BstSCI	CCNGG	3 cut(s)	30, 188, 318
BstSFI	CTRYAG	1 cut(s)	452
BstUI	CGCG	2 cut(s)	201, 335
BstV1I	GCAGC	3 cut(s)	40, 234, 237
BsuRI	GGCC	6 cut(s)	126, 140, 147, 186, 233, 533
BtgI	CCRYGG	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 306
BveI	ACCTGC	1 cut(s)	445
CfoI	GCGC	2 cut(s)	203, 395
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	138, 185, 193
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	145
EciI	GGCGGA	2 cut(s)	301, 434
Eco130I	CCWWGG	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	188, 318
EcoRV	GATATC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaiI	YATR	1 cut(s)	276
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	206
Fnu4HI	GCNGC	5 cut(s)	54, 234, 248, 251, 315
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	5 cut(s)	54, 234, 248, 251, 315
FspBI	CTAG	2 cut(s)	425, 527
GlaI	GCGC	2 cut(s)	202, 394
GluI	GCNGC	5 cut(s)	54, 234, 248, 251, 315
HaeIII	GGCC	6 cut(s)	126, 140, 147, 186, 233, 533
HapII	CCGG	2 cut(s)	31, 144
HhaI	GCGC	2 cut(s)	203, 395
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	2 cut(s)	201, 393
HinP1I	GCGC	2 cut(s)	201, 393
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	31, 144
HphI	GGTGA	1 cut(s)	469
Hpy188I	TCNGA	4 cut(s)	282, 366, 435, 545
Hpy188III	TCNNGA	2 cut(s)	220, 349
Hpy99I	CGWCG	3 cut(s)	46, 209, 245
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	174, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 233
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	2 cut(s)	201, 393
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	367, 421
LpnPI	CCDG	9 cut(s)	44, 115, 157, 161, 175, 202, 305, 332, 440
Lsp1109I	GCAGC	3 cut(s)	40, 234, 237
MaeI	CTAG	2 cut(s)	425, 527
MaeII	ACGT	1 cut(s)	41
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	3 cut(s)	81, 282, 285
MfeI	CAATTG	2 cut(s)	62, 503
MluCI	AATT	4 cut(s)	62, 270, 445, 503
MseI	TTAA	1 cut(s)	485
MspI	CCGG	2 cut(s)	31, 144
MspR9I	CCNGG	3 cut(s)	32, 190, 320
MunI	CAATTG	2 cut(s)	62, 503
MvaI	CCWGG	2 cut(s)	190, 320
MvnI	CGCG	2 cut(s)	201, 335
MwoI	GCNNNNNNNGC	2 cut(s)	171, 233
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	154
NlaIV	GGNNCC	4 cut(s)	187, 194, 260, 363
PaeR7I	CTCGAG	1 cut(s)	120
PaqCI	CACCTGC	1 cut(s)	445
PasI	CCCWGGG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	430
PflFI	GACNNNGTC	1 cut(s)	43
PkrI	GCNGC	5 cut(s)	55, 235, 249, 252, 316
Psp6I	CCWGG	2 cut(s)	188, 318
PspGI	CCWGG	2 cut(s)	188, 318
PspN4I	GGNNCC	4 cut(s)	187, 194, 260, 363
PspPI	GGNCC	3 cut(s)	138, 185, 193
PspXI	VCTCGAGB	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	456
PsyI	GACNNNGTC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	5 cut(s)	54, 234, 248, 251, 315
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	3 cut(s)	138, 185, 193
ScrFI	CCNGG	3 cut(s)	32, 190, 320
SetI	ASST	7 cut(s)	24, 44, 171, 249, 426, 443, 459
SfcI	CTRYAG	1 cut(s)	452
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	193
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	4 cut(s)	62, 270, 445, 503
SsiI	CCGC	4 cut(s)	234, 312, 315, 419
SspMI	CTAG	2 cut(s)	425, 527
StyD4I	CCNGG	3 cut(s)	30, 188, 318
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	6 cut(s)	121, 207, 240, 296, 350, 516
TasI	AATT	4 cut(s)	62, 270, 445, 503
TauI	GCSGC	2 cut(s)	236, 317
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	2 cut(s)	181, 306
TseI	GCWGC	3 cut(s)	53, 247, 250
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	2 cut(s)	181, 306
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	2 cut(s)	425, 527
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.