Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

13116137 .. 13124491

Gene Structure 8355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGATCTTGTGAGCCAAAAATTTAACTACCTTGGCATTTCTGGATTCAAGTATTACACTATCGATTCTTATGAAAAGAGCCTCGTCTTACTCGACGTGGACAATGCAAGATTGCTTAAGACAAGAACAGAAGTTCAAGAAAGCCTGTGGAAAAGCATGACACGAACAAGAGTGAGGGTTTTCGAAGGGCATCTGAACAATTGGCGATATCTGCCATTAGAGATCTCAGTTCTTCATAGATTGGACACGCATAACGTGAGCCTCAATTTCTCGATGGTGGAGGCTCCGAGTCCTTTGTTTACTAATCGGCGAGGCACAATGGTGGGTAGCAGCGGAGTGGCGAAGCCGGTGAATAAGAATAGCTCGAATTTTCTGCAGGTGAGGATGGTGTTAAGGCCGAAGTTGTTAATCTTTGTCCGCCGAAAATTGCCTGCGATCGAAGTGGGCTGGGCTAGAGGCGAAGTTGTCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

157

Amino Acids

18.06

Weight (kDa)

10.22

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	367
AciI	CCGC	2 cut(s)	333, 418
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	20, 367
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	49, 137
AjiI	CACGTC	1 cut(s)	97
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	2 cut(s)	20, 367
AsuHPI	GGTGA	2 cut(s)	361, 391
AsuII	TTCGAA	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	2 cut(s)	268, 379
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	374
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	367
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	1 cut(s)	199
Bpu14I	TTCGAA	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	346
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	342
BseYI	CCCAGC	1 cut(s)	447
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	397
BshVI	ATCGAT	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	347
BsnI	GGCC	1 cut(s)	397
Bsp119I	TTCGAA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	4, 222, 435
BspACI	CCGC	2 cut(s)	333, 418
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	239
BspDI	ATCGAT	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	183
BspTI	CTTAAG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	4, 222, 435
BssT1I	CCWWGG	1 cut(s)	31
BstAFI	CTTAAG	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	390
BstKTI	GATC	3 cut(s)	7, 225, 438
BstMBI	GATC	3 cut(s)	4, 222, 435
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	342
BstX2I	RGATCY	2 cut(s)	4, 222
BstYI	RGATCY	2 cut(s)	4, 222
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	397
BsuTUI	ATCGAT	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	346
ClaI	ATCGAT	1 cut(s)	63
CviAII	CATG	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	3 cut(s)	6, 224, 437
DpnII	GATC	3 cut(s)	4, 222, 435
EciI	GGCGGA	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	209
EcoRV	GATATC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	160
FaiI	YATR	4 cut(s)	72, 158, 237, 252
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	331
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	451
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	3 cut(s)	45, 65, 289
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	361, 391
Hpy166II	GTNNAC	2 cut(s)	100, 300
Hpy188I	TCNGA	2 cut(s)	195, 288
Hpy188III	TCNNGA	3 cut(s)	42, 137, 271
Hpy8I	GTNNAC	2 cut(s)	100, 300
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	96, 255
HpyCH4V	TGCA	2 cut(s)	107, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	226
HpySE526I	ACGT	2 cut(s)	96, 255
Hsp92II	CATG	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	4, 222, 435
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	6 cut(s)	27, 158, 360, 362, 433, 444
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	2 cut(s)	96, 255
MalI	GATC	3 cut(s)	6, 224, 437
MboI	GATC	3 cut(s)	4, 222, 435
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	199
MflI	RGATCY	2 cut(s)	4, 222
MluCI	AATT	5 cut(s)	20, 199, 265, 367, 425
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	7 cut(s)	92, 168, 272, 274, 305, 375, 449
MseI	TTAA	4 cut(s)	24, 117, 392, 407
MslI	CAYNNNNRTG	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	333
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	347
MunI	CAATTG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeII	GATC	3 cut(s)	4, 222, 435
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	183
OliI	CACNNNNGTG	1 cut(s)	320
PaqCI	CACCTGC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	45, 65
PkrI	GCNGC	1 cut(s)	332
Ple19I	CGATCG	1 cut(s)	438
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	4, 222
PvuI	CGATCG	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	4 cut(s)	24, 117, 392, 407
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	3 cut(s)	4, 222, 435
SchI	GAGTC	1 cut(s)	298
SetI	ASST	5 cut(s)	33, 99, 258, 365, 381
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	374
SfuI	TTCGAA	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	5 cut(s)	20, 199, 265, 367, 425
SsiI	CCGC	2 cut(s)	333, 418
SspMI	CTAG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	31
TaiI	ACGT	2 cut(s)	99, 258
TaqI	TCGA	6 cut(s)	63, 93, 183, 272, 365, 438
TasI	AATT	5 cut(s)	20, 199, 265, 367, 425
TfiI	GAWTC	2 cut(s)	45, 65
Tru1I	TTAA	4 cut(s)	24, 117, 392, 407
Tru9I	TTAA	4 cut(s)	24, 117, 392, 407
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	2 cut(s)	87, 224
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	2 cut(s)	20, 367
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.