Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

131306 .. 135210

Gene Structure 3905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggtctgcttcatcgagtccttagcggaatcggaaacgcctttggagataacggagctgtcaagtggctcaatccgcttcaacatattggcgataacggagaatccgcggtcgaagccggatttcctcgtcgagacgaactcgtcggacacgcctccgccgcagacgccggagatgaggcatcagattgtagaagccgagcaggccagacgacgccgttgggcgcggaaggagggaagtaattggcgggcgaggagccaggggaagaagacacggagattggaagaaaattgcaaatcgacttttccggcaaaattttcccgcgagccgccactcatggagggtcttttctccagcaaaggaggaccatggattgcttcttcctccaccgctagcgaaatcgtggaggctcgagaccacattctaagggccacctaccggaaggaccgccatagcaaggtttgcaccgccaaaggccccaaggaccaccccgcctggcttgccgcccacaccgccaatcaattctacgacgtgcaagaccggctcggatatgaccggcccagcatggctgtcgattggctcatcaagaaagccaaggccacaatagacgagctgccgcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

207

Amino Acids

23.56

Weight (kDa)

9.32

Isoelectric Point (pI)

63.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	142
AccII	CGCG	4 cut(s)	109, 226, 324, 619
AcsI	RAATTY	1 cut(s)	314
AcyI	GRCGYC	2 cut(s)	167, 214
AfiI	CCNNNNNNNGG	2 cut(s)	438, 457
AgsI	TTSAA	1 cut(s)	82
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	2 cut(s)	258, 494
AluBI	AGCT	2 cut(s)	58, 613
AluI	AGCT	2 cut(s)	58, 613
Alw26I	GTCTC	2 cut(s)	128, 408
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	5 cut(s)	204, 429, 475, 557, 597
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	6 cut(s)	365, 429, 445, 476, 484, 558
AsuNHI	GCTAGC	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	3 cut(s)	365, 445, 484
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	600
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	553, 587
BciT130I	CCWGG	2 cut(s)	260, 496
BcoDI	GTCTC	2 cut(s)	128, 408
BfaI	CTAG	1 cut(s)	393
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	5 cut(s)	161, 329, 504, 614, 617
BlsI	GCNGC	5 cut(s)	162, 330, 505, 615, 618
Bme1390I	CCNGG	2 cut(s)	260, 496
Bme18I	GGWCC	3 cut(s)	365, 445, 484
BmeT110I	CYCGRG	1 cut(s)	411
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	6 cut(s)	365, 429, 445, 476, 484, 558
BmiI	GGNNCC	2 cut(s)	257, 478
BmrFI	CCNGG	2 cut(s)	260, 496
BmsI	GCATC	1 cut(s)	190
BmtI	GCTAGC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	22
BsaHI	GRCGYC	2 cut(s)	167, 214
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	6 cut(s)	107, 259, 368, 480, 594, 617
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 457
Bse118I	RCCGGY	2 cut(s)	540, 555
BseBI	CCWGG	2 cut(s)	260, 496
BseDI	CCNNGG	6 cut(s)	107, 259, 368, 480, 594, 617
BseLI	CCNNNNNNNGG	2 cut(s)	438, 457
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	600
BseYI	CCCAGC	1 cut(s)	560
Bsh1236I	CGCG	4 cut(s)	109, 226, 324, 619
Bsh1285I	CGRYCG	1 cut(s)	113
BshFI	GGCC	5 cut(s)	206, 431, 477, 559, 599
BsiEI	CGRYCG	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	6 cut(s)	119, 170, 308, 439, 541, 556
BslI	CCNNNNNNNGG	2 cut(s)	438, 457
BsmAI	GTCTC	2 cut(s)	128, 408
BsmBI	CGTCTC	1 cut(s)	128
BsnI	GGCC	5 cut(s)	206, 431, 477, 559, 599
Bso31I	GGTCTC	1 cut(s)	408
BsoBI	CYCGRG	1 cut(s)	411
Bsp19I	CCATGG	1 cut(s)	368
BspANI	GGCC	5 cut(s)	206, 431, 477, 559, 599
BspFNI	CGCG	4 cut(s)	109, 226, 324, 619
BspLI	GGNNCC	2 cut(s)	257, 478
BspOI	GCTAGC	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	408
BsrFI	RCCGGY	2 cut(s)	540, 555
BssAI	RCCGGY	2 cut(s)	540, 555
BssECI	CCNNGG	6 cut(s)	107, 259, 368, 480, 594, 617
BssNI	GRCGYC	2 cut(s)	167, 214
BssT1I	CCWWGG	3 cut(s)	368, 480, 594
Bst2UI	CCWGG	2 cut(s)	260, 496
BstACI	GRCGYC	2 cut(s)	167, 214
BstAPI	GCANNNNNTGC	1 cut(s)	462
BstC8I	GCNNGC	5 cut(s)	204, 249, 326, 394, 501
BstDEI	CTNAG	2 cut(s)	22, 425
BstDSI	CCRYGG	3 cut(s)	107, 368, 617
BstFNI	CGCG	4 cut(s)	109, 226, 324, 619
BstHHI	GCGC	1 cut(s)	226
BstMAI	GTCTC	2 cut(s)	128, 408
BstMCI	CGRYCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	9 cut(s)	75, 115, 160, 166, 203, 462, 500, 512, 541
BstNI	CCWGG	2 cut(s)	260, 496
BstSCI	CCNGG	2 cut(s)	258, 494
BstUI	CGCG	4 cut(s)	109, 226, 324, 619
BstV1I	GCAGC	1 cut(s)	600
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	5 cut(s)	206, 431, 477, 559, 599
BtgI	CCRYGG	3 cut(s)	107, 368, 617
BtrI	CACGTC	1 cut(s)	532
Cac8I	GCNNGC	5 cut(s)	204, 249, 326, 394, 501
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	2 cut(s)	540, 555
Cfr13I	GGNCC	6 cut(s)	365, 429, 445, 476, 484, 558
Cfr42I	CCGCGG	2 cut(s)	110, 620
CseI	GACGC	2 cut(s)	175, 222
CviAII	CATG	3 cut(s)	337, 369, 565
DdeI	CTNAG	2 cut(s)	22, 425
DrdI	GACNNNNNNGTC	1 cut(s)	142
DseDI	GACNNNNNNGTC	1 cut(s)	142
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	368, 480, 594
Eco31I	GGTCTC	1 cut(s)	408
Eco47I	GGWCC	3 cut(s)	365, 445, 484
Eco88I	CYCGRG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	258, 494
EcoT14I	CCWWGG	3 cut(s)	368, 480, 594
ErhI	CCWWGG	3 cut(s)	368, 480, 594
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	3 cut(s)	340, 372, 568
FaiI	YATR	6 cut(s)	86, 338, 370, 453, 552, 566
FatI	CATG	3 cut(s)	336, 368, 564
FauI	CCCGC	3 cut(s)	240, 329, 499
Fnu4HI	GCNGC	5 cut(s)	161, 329, 504, 614, 617
Fsp4HI	GCNGC	5 cut(s)	161, 329, 504, 614, 617
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	5 cut(s)	161, 329, 504, 614, 617
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	337
HaeIII	GGCC	5 cut(s)	206, 431, 477, 559, 599
HapII	CCGG	6 cut(s)	119, 170, 308, 439, 541, 556
HgaI	GACGC	2 cut(s)	175, 222
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	2 cut(s)	167, 214
Hin1II	CATG	3 cut(s)	340, 372, 568
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	3 cut(s)	17, 29, 103
HpaII	CCGG	6 cut(s)	119, 170, 308, 439, 541, 556
Hpy188I	TCNGA	4 cut(s)	34, 148, 186, 548
Hpy188III	TCNNGA	3 cut(s)	133, 413, 586
Hpy99I	CGWCG	4 cut(s)	134, 148, 216, 533
HpyAV	CCTTC	2 cut(s)	223, 436
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	3 cut(s)	294, 465, 535
HpyF10VI	GCNNNNNNNGC	9 cut(s)	75, 115, 160, 166, 203, 462, 500, 512, 541
HpyF3I	CTNAG	2 cut(s)	22, 425
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	2 cut(s)	167, 214
Hsp92II	CATG	3 cut(s)	340, 372, 568
HspAI	GCGC	1 cut(s)	224
KspI	CCGCGG	2 cut(s)	110, 620
LmnI	GCTCC	2 cut(s)	55, 255
Lsp1109I	GCAGC	1 cut(s)	600
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	531
MboII	GAAGA	4 cut(s)	277, 280, 296, 372
MluCI	AATT	4 cut(s)	241, 289, 314, 521
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	9 cut(s)	137, 165, 171, 226, 246, 334, 356, 394, 400
MspA1I	CMGCKG	2 cut(s)	109, 619
MspI	CCGG	6 cut(s)	119, 170, 308, 439, 541, 556
MspR9I	CCNGG	2 cut(s)	260, 496
MvaI	CCWGG	2 cut(s)	260, 496
MvnI	CGCG	4 cut(s)	109, 226, 324, 619
MwoI	GCNNNNNNNGC	9 cut(s)	75, 115, 160, 166, 203, 462, 500, 512, 541
NcoI	CCATGG	1 cut(s)	368
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	3 cut(s)	340, 372, 568
NlaIV	GGNNCC	2 cut(s)	257, 478
NmeAIII	GCCGAG	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	29, 103
PkrI	GCNGC	5 cut(s)	162, 330, 505, 615, 618
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	258, 494
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	258, 494
PspN4I	GGNNCC	2 cut(s)	257, 478
PspPI	GGNCC	6 cut(s)	365, 429, 445, 476, 484, 558
SacII	CCGCGG	2 cut(s)	110, 620
SatI	GCNGC	5 cut(s)	161, 329, 504, 614, 617
Sau96I	GGNCC	6 cut(s)	365, 429, 445, 476, 484, 558
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	260, 496
SetI	ASST	5 cut(s)	60, 437, 462, 534, 615
SfaNI	GCATC	1 cut(s)	190
Sfr274I	CTCGAG	1 cut(s)	411
Sfr303I	CCGCGG	2 cut(s)	110, 620
SgrBI	CCGCGG	2 cut(s)	110, 620
SinI	GGWCC	3 cut(s)	365, 445, 484
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	4 cut(s)	241, 289, 314, 521
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	258, 494
StyI	CCWWGG	3 cut(s)	368, 480, 594
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	6 cut(s)	15, 113, 132, 299, 412, 573
TasI	AATT	4 cut(s)	241, 289, 314, 521
TauI	GCSGC	4 cut(s)	163, 331, 506, 619
TfiI	GAWTC	2 cut(s)	29, 103
TseI	GCWGC	1 cut(s)	613
TspGWI	ACGGA	3 cut(s)	68, 113, 289
VpaK11BI	GGWCC	3 cut(s)	365, 445, 484
XapI	RAATTY	1 cut(s)	314
XhoI	CTCGAG	1 cut(s)	411
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.