Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000550.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

60863 .. 61222

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000550.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgacgtcgtcctccgctgcttctcgattgggtttggggataaggacttcttcttcctccaccgccagcgaaatcgtggaggctcgaggccacattttaagggccaccggccgaaaggaccgccacagtaaggtctgcaccgccaaaggccccagggaccatcgagtccggctcgccgcccacaccaccattcaattctacgatgcgcaagaccggctcggatactaccggcccagcaaggccgtcgattggctcatcaagaaagccaaggccgtaatcaacgagctgcagccatggaacccgaactcaatttctgttcagacaacatcttctccgacagtgccgatatccgccgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

119

Amino Acids

12.96

Weight (kDa)

10.52

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AatII	GACGTC	1 cut(s)	8
Acc16I	TGCGCA	1 cut(s)	207
AccII	CGCG	1 cut(s)	356
AciI	CCGC	7 cut(s)	15, 63, 121, 141, 177, 351, 354
AcoI	YGGCCR	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	130, 249
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	7 cut(s)	88, 102, 109, 148, 230, 240, 270
ApeKI	GCWGC	3 cut(s)	17, 286, 289
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	5 cut(s)	102, 118, 149, 157, 231
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	2 cut(s)	118, 157
BbvI	GCAGC	3 cut(s)	4, 273, 301
BccI	CCATC	1 cut(s)	168
BceAI	ACGGC	2 cut(s)	227, 257
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	5 cut(s)	18, 177, 287, 290, 354
BlsI	GCNGC	5 cut(s)	19, 178, 288, 291, 355
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	2 cut(s)	118, 157
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	5 cut(s)	102, 118, 149, 157, 231
BmiI	GGNNCC	3 cut(s)	151, 158, 299
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	193
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	152, 153, 267, 293
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 249
Bse118I	RCCGGY	3 cut(s)	107, 213, 228
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	4 cut(s)	152, 153, 267, 293
BseLI	CCNNNNNNNGG	2 cut(s)	130, 249
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	3 cut(s)	4, 273, 301
BseYI	CCCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	7 cut(s)	90, 104, 111, 150, 232, 242, 272
BsiEI	CGRYCG	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	4 cut(s)	108, 169, 214, 229
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	130, 249
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	7 cut(s)	90, 104, 111, 150, 232, 242, 272
BsoBI	CYCGRG	1 cut(s)	84
Bsp19I	CCATGG	1 cut(s)	293
BspACI	CCGC	7 cut(s)	15, 63, 121, 141, 177, 351, 354
BspANI	GGCC	7 cut(s)	90, 104, 111, 150, 232, 242, 272
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	3 cut(s)	151, 158, 299
BspMAI	CTGCAG	1 cut(s)	291
BsrFI	RCCGGY	3 cut(s)	107, 213, 228
BssAI	RCCGGY	3 cut(s)	107, 213, 228
BssECI	CCNNGG	4 cut(s)	152, 153, 267, 293
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	267, 293
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	128, 340
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	67, 174
BstDSI	CCRYGG	1 cut(s)	293
BstFNI	CGCG	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	208
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	287
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	4, 273, 301
BstZI	CGGCCG	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	7 cut(s)	90, 104, 111, 150, 232, 242, 272
BtgI	CCRYGG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	67, 174
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	3 cut(s)	107, 213, 228
Cfr13I	GGNCC	5 cut(s)	102, 118, 149, 157, 231
CviAII	CATG	1 cut(s)	294
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	340
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	267, 293
Eco32I	GATATC	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	118, 157
Eco52I	CGGCCG	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	267, 293
ErhI	CCWWGG	2 cut(s)	267, 293
FaeI	CATG	1 cut(s)	297
FaiI	YATR	1 cut(s)	295
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	293
Fnu4HI	GCNGC	5 cut(s)	18, 177, 287, 290, 354
Fsp4HI	GCNGC	5 cut(s)	18, 177, 287, 290, 354
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	5 cut(s)	18, 177, 287, 290, 354
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	7 cut(s)	90, 104, 111, 150, 232, 242, 272
HapII	CCGG	4 cut(s)	108, 169, 214, 229
HhaI	GCGC	1 cut(s)	208
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	297
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	4 cut(s)	108, 169, 214, 229
Hpy188I	TCNGA	3 cut(s)	221, 321, 336
Hpy188III	TCNNGA	2 cut(s)	24, 259
Hpy99I	CGWCG	2 cut(s)	10, 248
HpyCH4III	ACNGT	2 cut(s)	128, 340
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	138, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	297
HspAI	GCGC	1 cut(s)	206
LpnPI	CCDG	8 cut(s)	79, 121, 139, 166, 182, 227, 242, 247
Lsp1109I	GCAGC	3 cut(s)	4, 273, 301
LweI	GCATC	1 cut(s)	193
MaeII	ACGT	1 cut(s)	5
MboII	GAAGA	3 cut(s)	42, 45, 321
MluCI	AATT	2 cut(s)	194, 309
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	4 cut(s)	22, 67, 73, 80
MseI	TTAA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	4 cut(s)	108, 169, 214, 229
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	293
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	3 cut(s)	151, 158, 299
NsbI	TGCGCA	1 cut(s)	207
PaeR7I	CTCGAG	1 cut(s)	84
PasI	CCCWGGG	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	5 cut(s)	19, 178, 288, 291, 355
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	151, 158, 299
PspPI	GGNCC	5 cut(s)	102, 118, 149, 157, 231
PspXI	VCTCGAGB	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	291
PsyI	GACNNNGTC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	5 cut(s)	18, 177, 287, 290, 354
Sau96I	GGNCC	5 cut(s)	102, 118, 149, 157, 231
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	3 cut(s)	8, 135, 288
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	287
Sfr274I	CTCGAG	1 cut(s)	84
SinI	GGWCC	2 cut(s)	118, 157
SlaI	CTCGAG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	194, 309
SsiI	CCGC	7 cut(s)	15, 63, 121, 141, 177, 351, 354
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	2 cut(s)	267, 293
TaaI	ACNGT	2 cut(s)	128, 340
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	4 cut(s)	25, 85, 163, 246
TasI	AATT	2 cut(s)	194, 309
TauI	GCSGC	2 cut(s)	179, 356
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	3 cut(s)	17, 286, 289
TspRI	CASTG	1 cut(s)	345
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	118, 157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	84
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.