Rorug05G0127000
TCP Family

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
11254336 .. 11269487
15152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0127000.1

Sequence Viewer

Length: 720 bp
ATGGTTGCTCGGGACTTCCAAGTTGATTTGAATAAAGCCCTCGTATTCCAGGTTGGCCATCTTGGAGAGGCATATCACGAGTGGGTTCACCAGCCTATTGTCTGCACTGAAGGCCCTCGATTTTTTGAAAATGAATTTTTGGAGTTCTTGACCCGCACTGTGTGGTGGGCAGTTCCTACCATATGGCTTCCAGTTGTGTGTTACTCTATCTCCAAGACCGTACAGATGGGCCATACGTTTCCTGAAATAGTTCTGATGGTTCTTTTTGGCATTTTGGTGTCGACATTGCTTGAATATACAATTCACCGTTTCCTTTTCCATATTGAAACCAAAAGCTACTGGGGGAACACCATACATTATGTTCTCCATGGCTGCCATCACAAACACCCAATGGATGGTTTGCGACTTGTTCTTCCTCCGACTGCAACAGCTATTTTATGTCTTCTAGTATGGTATATGTTTAGGCTTTTATCACCTCCATCAGTTGCTCCGGCTTTGTTTGGAGGAACCTTATTGGGATATGTAGCATATGATGTCACTCATTACTACCTTCACCATGGGAAGCCATCTAAAAGATTGACTCAAGATCTGAAGAAATATCACATGAACCATCACTTCAGAATTCAAAGTAAGGGATTCGGGATCACTTCCTCCTTATGGGACAATGTTTTCGGAACAGTGCCTTCAACAAAAGCTGCTGAGAAAATGAGTAACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

239

Amino Acids

27.57

Weight (kDa)

8.62

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 87 - 226 1.9e-16 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca FvH4_3g08160 FvH4_3g18740
malus_domestica MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis pycom03g18430 pycom11g22850
rosa_chinensis RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 395
AccI GTMKAC 1 cut(s) 281
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 650
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 2 cut(s) 134, 621
AcuI CTGAAG 3 cut(s) 129, 601, 611
AdeI CACNNNGTG 1 cut(s) 162
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 395, 657
AgsI TTSAA 6 cut(s) 31, 128, 293, 326, 626, 687
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 3 cut(s) 336, 431, 695
AluI AGCT 3 cut(s) 336, 431, 695
AlwI GGATC 1 cut(s) 650
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 3 cut(s) 55, 112, 229
ApeKI GCWGC 2 cut(s) 372, 695
ApoI RAATTY 2 cut(s) 134, 621
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 113, 229
AsuHPI GGTGA 4 cut(s) 80, 296, 465, 545
AvaI CYCGRG 1 cut(s) 9
BalI TGGCCA 1 cut(s) 57
BauI CACGAG 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 359, 682
BccI CCATC 8 cut(s) 66, 220, 250, 384, 389, 487, 574, 618
BciT130I CCWGG 1 cut(s) 50
BfaI CTAG 1 cut(s) 446
BglII AGATCT 1 cut(s) 586
BisI GCNGC 2 cut(s) 373, 696
BlsI GCNGC 2 cut(s) 374, 697
Bme1390I CCNGG 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 113, 229
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 367, 556
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 657
Bse1I ACTGG 3 cut(s) 191, 344, 715
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 367, 556
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 2 cut(s) 395, 657
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 690
BseNI ACTGG 3 cut(s) 191, 344, 715
BseXI GCAGC 2 cut(s) 359, 682
BsgI GTGCAG 1 cut(s) 88
BshFI GGCC 3 cut(s) 57, 114, 231
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 2 cut(s) 26, 674
BslI CCNNNNNNNGG 2 cut(s) 395, 657
BsmFI GGGAC 2 cut(s) 26, 674
BsnI GGCC 3 cut(s) 57, 114, 231
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 2 cut(s) 586, 642
Bsp19I CCATGG 2 cut(s) 367, 556
BspACI CCGC 1 cut(s) 154
BspANI GGCC 3 cut(s) 57, 114, 231
BspCNI CTCAG 1 cut(s) 691
BspLI GGNNCC 1 cut(s) 508
BspPI GGATC 1 cut(s) 650
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 3 cut(s) 191, 344, 715
BssECI CCNNGG 2 cut(s) 367, 556
BssMI GATC 2 cut(s) 586, 642
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 2 cut(s) 367, 556
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 4 cut(s) 160, 220, 308, 679
BstDEI CTNAG 1 cut(s) 699
BstDSI CCRYGG 2 cut(s) 367, 556
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 2 cut(s) 589, 645
BstMBI GATC 2 cut(s) 586, 642
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 359, 682
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuRI GGCC 3 cut(s) 57, 114, 231
BtgI CCRYGG 2 cut(s) 367, 556
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 3 cut(s) 105, 156, 684
Cfr13I GGNCC 2 cut(s) 113, 229
Csp6I GTAC 1 cut(s) 221
CviAII CATG 3 cut(s) 368, 557, 604
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 1 cut(s) 699
DpnI GATC 2 cut(s) 588, 644
DpnII GATC 2 cut(s) 586, 642
DraIII CACNNNGTG 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 367, 556
Eco57I CTGAAG 3 cut(s) 129, 601, 611
Eco88I CYCGRG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 2 cut(s) 367, 556
ErhI CCWWGG 2 cut(s) 367, 556
FaeI CATG 3 cut(s) 371, 560, 607
FaqI GGGAC 2 cut(s) 26, 674
FatI CATG 3 cut(s) 367, 556, 603
FauI CCCGC 1 cut(s) 161
FauNDI CATATG 2 cut(s) 182, 529
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 2 cut(s) 373, 696
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 2 cut(s) 373, 696
FspBI CTAG 1 cut(s) 446
GluI GCNGC 2 cut(s) 373, 696
HaeIII GGCC 3 cut(s) 57, 114, 231
HapII CCGG 1 cut(s) 491
Hin1II CATG 3 cut(s) 371, 560, 607
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 2 cut(s) 580, 636
HpaII CCGG 1 cut(s) 491
HphI GGTGA 4 cut(s) 80, 296, 465, 545
Hpy166II GTNNAC 2 cut(s) 88, 282
Hpy188I TCNGA 5 cut(s) 255, 420, 591, 620, 674
Hpy188III TCNNGA 6 cut(s) 11, 77, 148, 242, 584, 640
Hpy8I GTNNAC 2 cut(s) 88, 282
HpyAV CCTTC 3 cut(s) 104, 560, 693
HpyCH4III ACNGT 4 cut(s) 160, 220, 308, 679
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 105, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 699
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 3 cut(s) 371, 560, 607
Kzo9I GATC 2 cut(s) 586, 642
LmnI GCTCC 1 cut(s) 493
LpnPI CCDG 7 cut(s) 35, 62, 104, 204, 255, 325, 504
Lsp1109I GCAGC 2 cut(s) 359, 682
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 3 cut(s) 200, 535, 710
MalI GATC 2 cut(s) 588, 644
MboI GATC 2 cut(s) 586, 642
MboII GAAGA 3 cut(s) 404, 434, 604
MflI RGATCY 1 cut(s) 586
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 3 cut(s) 134, 300, 621
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 1 cut(s) 574
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 7 cut(s) 50, 61, 126, 426, 486, 497, 661
Mox20I TGGCCA 1 cut(s) 57
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 111
NcoI CCATGG 2 cut(s) 367, 556
NdeI CATATG 2 cut(s) 182, 529
NdeII GATC 2 cut(s) 586, 642
NlaIII CATG 3 cut(s) 371, 560, 607
NlaIV GGNNCC 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 636
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 2 cut(s) 374, 697
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 2 cut(s) 113, 229
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 275
SalI GTCGAC 1 cut(s) 280
SatI GCNGC 2 cut(s) 373, 696
Sau3AI GATC 2 cut(s) 586, 642
Sau96I GGNCC 2 cut(s) 113, 229
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 1 cut(s) 50
SetI ASST 8 cut(s) 54, 239, 338, 433, 478, 512, 552, 697
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 3 cut(s) 134, 300, 621
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 2 cut(s) 367, 556
TaaI ACNGT 4 cut(s) 160, 220, 308, 679
TaiI ACGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 118, 281
TasI AATT 3 cut(s) 134, 300, 621
TfiI GAWTC 1 cut(s) 636
TscAI CASTG 3 cut(s) 112, 163, 684
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 2 cut(s) 372, 695
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 2 cut(s) 147, 620
TspRI CASTG 3 cut(s) 112, 163, 684
Van91I CCANNNNNTGG 1 cut(s) 395
XapI RAATTY 2 cut(s) 134, 621
XmiI GTMKAC 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.