Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030540.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

5439 .. 5864

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030540.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggaatatgcaggaagaacaatgggggagagccacaacaacctccaccaccgcgcaatgacgtcgtcctccgctgcttctcgattgggtttgggtataaggacttcttcttcctccatcgccagcgaaatcgtggaggctcggggccacattctaagggccaccgaccgaaaggaccgccacagcaaggtctacaccgccaaaggccctagggaccacctcgtccagatcaccacccacaccgccattcaattctacgaagtgcaagaccgggtcggatacgaccggcccagcaaggccttcaattggatcatcaagaaagccaaggccgcaatcgacgagctgccgccgtggaactcgaactcaatttctgttcagacaacttcttcttcgacggtgccgatatccgcctcgcaggacacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

141

Amino Acids

15.55

Weight (kDa)

9.75

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AatII	GACGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	54
AciI	CCGC	8 cut(s)	52, 72, 178, 198, 243, 330, 347, 408
AclWI	GGATC	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	187, 306
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	251, 304
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	6 cut(s)	145, 159, 205, 287, 297, 327
ApeKI	GCWGC	2 cut(s)	74, 343
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	6 cut(s)	145, 159, 175, 206, 214, 288
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	141
AvaII	GGWCC	2 cut(s)	175, 214
AvrII	CCTAGG	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	397
BarI	GAAGNNNNNNTAC	2 cut(s)	88, 120
BbvI	GCAGC	2 cut(s)	61, 330
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciVI	GTATCC	1 cut(s)	272
BcnI	CCSGG	1 cut(s)	272
BfaI	CTAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	272
BisI	GCNGC	4 cut(s)	75, 330, 344, 347
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	4 cut(s)	76, 331, 345, 348
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	175, 214
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	6 cut(s)	145, 159, 175, 206, 214, 288
BmiI	GGNNCC	3 cut(s)	146, 215, 399
BmrFI	CCNGG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	209, 324, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 306
Bse118I	RCCGGY	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	209, 324, 350
BseLI	CCNNNNNNNGG	2 cut(s)	187, 306
BseMI	GCAATG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	61, 330
BseYI	CCCAGC	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	2 cut(s)	169, 286
BshFI	GGCC	6 cut(s)	147, 161, 207, 289, 299, 329
BshNI	GGYRCC	1 cut(s)	397
BsiEI	CGRYCG	2 cut(s)	169, 286
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	271, 286
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	187, 306
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	6 cut(s)	147, 161, 207, 289, 299, 329
BsoBI	CYCGRG	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	228, 309
BspACI	CCGC	8 cut(s)	52, 72, 178, 198, 243, 330, 347, 408
BspANI	GGCC	6 cut(s)	147, 161, 207, 289, 299, 329
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	3 cut(s)	146, 215, 399
BspPI	GGATC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	209, 324, 350
BssMI	GATC	2 cut(s)	228, 309
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	2 cut(s)	209, 324
Bst4CI	ACNGT	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	231, 312
BstMBI	GATC	2 cut(s)	228, 309
BstMCI	CGRYCG	2 cut(s)	169, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	61, 330
BsuI	GTATCC	1 cut(s)	272
BsuRI	GGCC	6 cut(s)	147, 161, 207, 289, 299, 329
BtgI	CCRYGG	1 cut(s)	350
BtgZI	GCGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	285
Cfr13I	GGNCC	6 cut(s)	145, 159, 175, 206, 214, 288
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	230, 311
DpnII	GATC	2 cut(s)	228, 309
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	397
Eco130I	CCWWGG	2 cut(s)	209, 324
Eco147I	AGGCCT	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	405
Eco47I	GGWCC	2 cut(s)	175, 214
Eco88I	CYCGRG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	405
EcoT14I	CCWWGG	2 cut(s)	209, 324
ErhI	CCWWGG	2 cut(s)	209, 324
FaiI	YATR	2 cut(s)	9, 98
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FaqI	GGGAC	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	75, 330, 344, 347
Fsp4HI	GCNGC	4 cut(s)	75, 330, 344, 347
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	4 cut(s)	75, 330, 344, 347
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	6 cut(s)	147, 161, 207, 289, 299, 329
HapII	CCGG	2 cut(s)	271, 286
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HpaII	CCGG	2 cut(s)	271, 286
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	278, 378
Hpy188III	TCNNGA	3 cut(s)	81, 226, 316
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	3 cut(s)	67, 341, 397
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	2 cut(s)	62, 422
HpyCH4V	TGCA	2 cut(s)	11, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	2 cut(s)	62, 422
Hsp92I	GRCGYC	1 cut(s)	62
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	228, 309
LpnPI	CCDG	6 cut(s)	136, 239, 284, 299, 304, 401
Lsp1109I	GCAGC	2 cut(s)	61, 330
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	2 cut(s)	62, 422
MalI	GATC	2 cut(s)	230, 311
MboI	GATC	2 cut(s)	228, 309
MboII	GAAGA	5 cut(s)	27, 99, 102, 378, 381
MfeI	CAATTG	1 cut(s)	304
MluCI	AATT	3 cut(s)	251, 304, 366
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	6 cut(s)	53, 79, 124, 130, 230, 421
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	271, 286
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	304
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	228, 309
NlaIV	GGNNCC	3 cut(s)	146, 215, 399
PceI	AGGCCT	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	2 cut(s)	398, 419
PflFI	GACNNNGTC	2 cut(s)	64, 272
PkrI	GCNGC	4 cut(s)	76, 331, 345, 348
Ppu21I	YACGTR	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	3 cut(s)	146, 215, 399
PspPI	GGNCC	6 cut(s)	145, 159, 175, 206, 214, 288
PsyI	GACNNNGTC	2 cut(s)	64, 272
SatI	GCNGC	4 cut(s)	75, 330, 344, 347
Sau3AI	GATC	2 cut(s)	228, 309
Sau96I	GGNCC	6 cut(s)	145, 159, 175, 206, 214, 288
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	6 cut(s)	45, 65, 192, 222, 345, 425
SinI	GGWCC	2 cut(s)	175, 214
Sse9I	AATT	3 cut(s)	251, 304, 366
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	8 cut(s)	52, 72, 178, 198, 243, 330, 347, 408
SspMI	CTAG	1 cut(s)	210
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	209, 324
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	2 cut(s)	65, 425
TaqI	TCGA	4 cut(s)	82, 336, 359, 392
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	3 cut(s)	251, 304, 366
TauI	GCSGC	2 cut(s)	332, 349
TseI	GCWGC	2 cut(s)	74, 343
Tth111I	GACNNNGTC	2 cut(s)	64, 272
VpaK11BI	GGWCC	2 cut(s)	175, 214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XmaJI	CCTAGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	210
ZraI	GACGTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.