Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002275.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

42341 .. 43039

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002275.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgacttctcattcccaagagagtctctatctgcaaatgtcacaacaaagagaatcaaaggaggaggaggaggaggaggaggaggaggaagaaaatgaagctcaagatcaaccagaagtcgctcaagcacaacaagactatggagcaagcagagtggaatctaaacaaccaagcatgaacaatgaaagatatggaaggatcgtgaaggttcaaggaggccacgttattagatcaattgccagaaaagacaggcacagcaagatctacacgtccaagggcccaagagacagaaggttccggctttcagctcaaactgccatagagttctatgatgttcaagaccgtcttggctttgatagaccaagcaaggccattgactggctcattcacaaggccaaggccgccattgaagctctcgaagattcttctactacacaccagcctcagcatcaccaaggaggcaatgccgagcctgaaactgtcaaaactcatcagcctttggacgagggcactatgaaaaatgagagcaaagaaccagttcttgactatgctgaagaagccctcaattgtgctcccaatttatcagaggccaatttcatggagatgggttggtttcaaagtctgatggcttggaattacaatgcaggtgatggtggagaaggttgttctttcaattcatcatctgttactctgctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

232

Amino Acids

26.33

Weight (kDa)

4.89

Isoelectric Point (pI)

69.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	635
Acc36I	ACCTGC	1 cut(s)	635
AccB7I	CCANNNNNTGG	1 cut(s)	378
AciI	CCGC	1 cut(s)	402
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	212, 338, 410, 617, 673
AjiI	CACGTC	1 cut(s)	270
AluBI	AGCT	3 cut(s)	101, 308, 413
AluI	AGCT	3 cut(s)	101, 308, 413
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	2 cut(s)	29, 279
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	6 cut(s)	217, 277, 369, 393, 399, 588
ApaI	GGGCCC	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	537
AspS9I	GGNCC	2 cut(s)	277, 278
AsuHPI	GGTGA	2 cut(s)	443, 659
BaeGI	GKGCMC	2 cut(s)	281, 512
BanII	GRGCYC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	574
BbvCI	CCTCAGC	1 cut(s)	444
BccI	CCATC	3 cut(s)	598, 619, 644
BcoDI	GTCTC	2 cut(s)	29, 279
BfmI	CTRYAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	635
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmgBI	CACGTC	1 cut(s)	270
BmgT120I	GGNCC	2 cut(s)	277, 278
BmiI	GGNNCC	2 cut(s)	279, 296
BmsI	GCATC	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	2 cut(s)	87, 108
BsaJI	CCNNGG	3 cut(s)	273, 396, 454
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse1I	ACTGG	2 cut(s)	383, 536
Bse3DI	GCAATG	1 cut(s)	469
BseDI	CCNNGG	3 cut(s)	273, 396, 454
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	2 cut(s)	383, 536
BseRI	GAGGAG	8 cut(s)	77, 80, 83, 86, 89, 92, 95, 98
BseSI	GKGCMC	2 cut(s)	281, 512
BshFI	GGCC	6 cut(s)	219, 279, 371, 395, 401, 590
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	2 cut(s)	29, 279
BsnI	GGCC	6 cut(s)	219, 279, 371, 395, 401, 590
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	281, 512, 574
Bsp143I	GATC	4 cut(s)	106, 198, 230, 261
BspACI	CCGC	1 cut(s)	402
BspANI	GGCC	6 cut(s)	219, 279, 371, 395, 401, 590
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	279, 296
BspMI	ACCTGC	1 cut(s)	635
BspPI	GGATC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	383, 536
BssECI	CCNNGG	3 cut(s)	273, 396, 454
BssMI	GATC	4 cut(s)	106, 198, 230, 261
BssT1I	CCWWGG	3 cut(s)	273, 396, 454
Bst4CI	ACNGT	2 cut(s)	344, 481
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	444
BstKTI	GATC	4 cut(s)	109, 201, 233, 264
BstMAI	GTCTC	2 cut(s)	29, 279
BstMBI	GATC	4 cut(s)	106, 198, 230, 261
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 401, 410, 557
BstSFI	CTRYAG	1 cut(s)	695
BstSLI	GKGCMC	2 cut(s)	281, 512
BstX2I	RGATCY	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	6 cut(s)	219, 279, 371, 395, 401, 590
BtrI	CACGTC	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	635
Cac8I	GCNNGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	277, 278
CspCI	CAANNNNNGTGG	2 cut(s)	135, 170
CviAII	CATG	2 cut(s)	175, 598
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	4 cut(s)	108, 200, 232, 263
DpnII	GATC	4 cut(s)	106, 198, 230, 261
Eco130I	CCWWGG	3 cut(s)	273, 396, 454
Eco24I	GRGCYC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	277
EcoT14I	CCWWGG	3 cut(s)	273, 396, 454
EcoT38I	GRGCYC	1 cut(s)	281
ErhI	CCWWGG	3 cut(s)	273, 396, 454
FaeI	CATG	2 cut(s)	178, 601
FaiI	YATR	9 cut(s)	141, 176, 192, 320, 330, 515, 549, 599, 697
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FatI	CATG	2 cut(s)	174, 597
Fnu4HI	GCNGC	1 cut(s)	402
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	6 cut(s)	219, 279, 371, 395, 401, 590
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	2 cut(s)	178, 601
HinfI	GANTC	4 cut(s)	22, 53, 158, 422
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	2 cut(s)	443, 659
Hpy188I	TCNGA	2 cut(s)	586, 624
Hpy188III	TCNNGA	5 cut(s)	104, 202, 338, 416, 542
HpyAV	CCTTC	4 cut(s)	189, 199, 285, 653
HpyCH4III	ACNGT	2 cut(s)	344, 481
HpyCH4IV	ACGT	2 cut(s)	222, 269
HpyCH4V	TGCA	2 cut(s)	34, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 401, 410, 557
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	2 cut(s)	222, 269
Hsp92II	CATG	2 cut(s)	178, 601
Kzo9I	GATC	4 cut(s)	106, 198, 230, 261
LmnI	GCTCC	2 cut(s)	143, 577
LpnPI	CCDG	9 cut(s)	126, 235, 253, 311, 364, 452, 486, 549, 630
LweI	GCATC	1 cut(s)	457
MaeII	ACGT	2 cut(s)	222, 269
MaeIII	GTNAC	2 cut(s)	39, 685
MalI	GATC	4 cut(s)	108, 200, 232, 263
MboI	GATC	4 cut(s)	106, 198, 230, 261
MboII	GAAGA	4 cut(s)	101, 417, 431, 566
MfeI	CAATTG	2 cut(s)	234, 565
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	3 cut(s)	281, 512, 574
MluCI	AATT	6 cut(s)	234, 565, 577, 592, 634, 673
MlyI	GAGTC	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	602
MspI	CCGG	1 cut(s)	298
MunI	CAATTG	2 cut(s)	234, 565
MwoI	GCNNNNNNNGC	4 cut(s)	314, 401, 410, 557
NdeII	GATC	4 cut(s)	106, 198, 230, 261
NlaIII	CATG	2 cut(s)	178, 601
NlaIV	GGNNCC	2 cut(s)	279, 296
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	39
PaqCI	CACCTGC	1 cut(s)	635
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	3 cut(s)	53, 158, 422
PflMI	CCANNNNNTGG	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	279, 296
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	277, 278
PsuI	RGATCY	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	602
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	4 cut(s)	106, 198, 230, 261
Sau96I	GGNCC	2 cut(s)	277, 278
SchI	GAGTC	1 cut(s)	31
SduI	GDGCHC	3 cut(s)	281, 512, 574
SetI	ASST	9 cut(s)	103, 210, 225, 272, 296, 310, 415, 649, 664
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	2 cut(s)	102, 123
SmoI	CTYRAG	2 cut(s)	102, 123
Sse9I	AATT	6 cut(s)	234, 565, 577, 592, 634, 673
SsiI	CCGC	1 cut(s)	402
StyI	CCWWGG	3 cut(s)	273, 396, 454
TaaI	ACNGT	2 cut(s)	344, 481
TaiI	ACGT	2 cut(s)	225, 272
TaqI	TCGA	1 cut(s)	417
TasI	AATT	6 cut(s)	234, 565, 577, 592, 634, 673
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	3 cut(s)	53, 158, 422
TseFI	GTSAC	1 cut(s)	39
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	6 cut(s)	111, 191, 198, 530, 586, 666
Van91I	CCANNNNNTGG	1 cut(s)	378
XmnI	GAANNNNTTC	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.