Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

46513764 .. 46514636

Gene Structure 873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTGTGATGCACGTGAGTCACTTAATGAAGACAAAAAGACCGATTTACCCTCAAAAGTTTTTTTTTCATTTTCTTTTCTTTCTTTCTTTCTTTATTCTTTTTTTTTTCCTTTTCTTTTCTTTTCTTTCTTTCTTTCTTTATTCTTCTTCTTCTTCTTTTTAGGTTTCTTTTTTCTCTCCTTCTCTCCTTGCCAACACCACCGCTTTCGGAGAACCACCATCGAATATGCAGGAAGAAAAATGGGGGAGAGCCACAACAACCTCCACCACCGCACAATGACGTCATCCTCCGCTGCTTCTCGATTGGATTTGGGGATAAGGACTGCTTCTTCCTCCACCGCCAGCGAAATCGTGGAGGCTCGAGGCCACATTCTAAGGTCCACCGGCAGGAAGGACCGCCACAGCAAGGTCTGCACCGCCAAAGGCCCCAGGGACCATCGCGTCCGGCTCGCCGCCCACATCGCCATTCAATCCTATGACGCGCAAGACCAGCTCGGATACTACCGGCCTAGCAAGGCCGTCGATTGGCTCATCAAGAAAGCCAAGGCAGCAATCGACGAGCTCGATGAGCTGTCGCCGTGGAACCCGAACTCAATTTCTGTTCAAATAATATCTTCTCCGACAGTGCCGATATCTGCCGCGCAGGACACGCAGAACGCGAGCCTCCATTTCTCGATGGTGGAGGCTCCGAGTTCTTTGTCTGCTAATCAACAAGGCGCAATGGTGGGTAGCAACGGAGTGGCGGAGCTGGTGAATCAGAACAACTCGAATTTTCTGCAGGTGAGGATGGTGTGGAGGCCGAAGTTGTTAATCTTTGTCTGCCTACAATTGCCTTTTATCGAAGTTGGGCTAGAGGCCGAAGTTGTCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

290

Amino Acids

32.73

Weight (kDa)

9.08

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	129 - 223	3.6e-27	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	769
AasI	GACNNNNNNGTC	1 cut(s)	440
AatII	GACGTC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	769
AccII	CGCG	4 cut(s)	441, 482, 641, 659
AciI	CCGC	9 cut(s)	202, 271, 291, 339, 397, 417, 453, 639, 743
AcsI	RAATTY	1 cut(s)	769
AcvI	CACGTG	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	387, 406, 525
AgsI	TTSAA	2 cut(s)	470, 605
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	4 cut(s)	493, 562, 571, 748
AluI	AGCT	4 cut(s)	493, 562, 571, 748
Alw21I	GWGCWC	1 cut(s)	564
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	6 cut(s)	364, 424, 506, 516, 797, 855
ApeKI	GCWGC	2 cut(s)	293, 548
ApoI	RAATTY	1 cut(s)	769
AspLEI	GCGC	3 cut(s)	484, 643, 719
AspS9I	GGNCC	4 cut(s)	378, 394, 425, 433
AsuHPI	GGTGA	2 cut(s)	763, 793
AvaI	CYCGRG	1 cut(s)	360
AvaII	GGWCC	3 cut(s)	378, 394, 433
BanII	GRGCYC	1 cut(s)	564
BbrPI	CACGTG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	280, 560
BccI	CCATC	4 cut(s)	227, 444, 670, 781
BceAI	ACGGC	2 cut(s)	503, 562
BcgI	CGANNNNNNTGC	4 cut(s)	502, 536, 757, 791
BciT130I	CCWGG	1 cut(s)	430
BciVI	GTATCC	1 cut(s)	491
BfaI	CTAG	2 cut(s)	510, 851
BfmI	CTRYAG	1 cut(s)	776
BfuAI	ACCTGC	1 cut(s)	769
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	4 cut(s)	294, 453, 549, 639
BlsI	GCNGC	4 cut(s)	295, 454, 550, 640
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	3 cut(s)	378, 394, 433
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	4 cut(s)	378, 394, 425, 433
BmiI	GGNNCC	4 cut(s)	427, 434, 584, 687
BmrFI	CCNGG	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	4 cut(s)	428, 429, 543, 578
Bsc4I	CCNNNNNNNGG	3 cut(s)	387, 406, 525
Bse118I	RCCGGY	2 cut(s)	383, 504
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	4 cut(s)	428, 429, 543, 578
BseGI	GGATG	2 cut(s)	284, 792
BseLI	CCNNNNNNNGG	3 cut(s)	387, 406, 525
BseMI	GCAATG	1 cut(s)	726
BseXI	GCAGC	2 cut(s)	280, 560
BsgI	GTGCAG	1 cut(s)	397
Bsh1236I	CGCG	4 cut(s)	441, 482, 641, 659
BshFI	GGCC	6 cut(s)	366, 426, 508, 518, 799, 857
BsiHKAI	GWGCWC	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	384, 445, 505
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	3 cut(s)	387, 406, 525
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	6 cut(s)	366, 426, 508, 518, 799, 857
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	564
BspACI	CCGC	9 cut(s)	202, 271, 291, 339, 397, 417, 453, 639, 743
BspANI	GGCC	6 cut(s)	366, 426, 508, 518, 799, 857
BspFNI	CGCG	4 cut(s)	441, 482, 641, 659
BspLI	GGNNCC	4 cut(s)	427, 434, 584, 687
BspMAI	CTGCAG	1 cut(s)	780
BspMI	ACCTGC	1 cut(s)	769
BsrDI	GCAATG	1 cut(s)	726
BsrFI	RCCGGY	2 cut(s)	383, 504
BssAI	RCCGGY	2 cut(s)	383, 504
BssECI	CCNNGG	4 cut(s)	428, 429, 543, 578
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	625
BstACI	GRCGYC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	411
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	343, 450, 661
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	284, 792
BstFNI	CGCG	4 cut(s)	441, 482, 641, 659
BstHHI	GCGC	3 cut(s)	484, 643, 719
BstMWI	GCNNNNNNNGC	6 cut(s)	411, 461, 490, 548, 568, 649
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	776
BstUI	CGCG	4 cut(s)	441, 482, 641, 659
BstV1I	GCAGC	2 cut(s)	280, 560
BstV2I	GAAGAC	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	6 cut(s)	366, 426, 508, 518, 799, 857
BtgI	CCRYGG	1 cut(s)	578
BtgZI	GCGATG	2 cut(s)	422, 445
BtsCI	GGATG	2 cut(s)	284, 792
BtsIMutI	CAGTG	1 cut(s)	630
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	3 cut(s)	343, 450, 661
CfoI	GCGC	3 cut(s)	484, 643, 719
Cfr10I	RCCGGY	2 cut(s)	383, 504
Cfr13I	GGNCC	4 cut(s)	378, 394, 425, 433
CseI	GACGC	2 cut(s)	430, 488
DdeI	CTNAG	1 cut(s)	374
DrdI	GACNNNNNNGTC	1 cut(s)	440
DseDI	GACNNNNNNGTC	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	758
Ecl136II	GAGCTC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	564
Eco32I	GATATC	1 cut(s)	633
Eco47I	GGWCC	3 cut(s)	378, 394, 433
Eco53kI	GAGCTC	1 cut(s)	562
Eco72I	CACGTG	1 cut(s)	14
Eco88I	CYCGRG	1 cut(s)	360
EcoICRI	GAGCTC	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	428
EcoRV	GATATC	1 cut(s)	633
EcoT14I	CCWWGG	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	543
FaiI	YATR	2 cut(s)	228, 477
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FaqI	GGGAC	1 cut(s)	446
Fnu4HI	GCNGC	4 cut(s)	294, 453, 549, 639
FokI	GGATG	2 cut(s)	271, 799
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	4 cut(s)	294, 453, 549, 639
FspBI	CTAG	2 cut(s)	510, 851
GlaI	GCGC	3 cut(s)	483, 642, 718
GluI	GCNGC	4 cut(s)	294, 453, 549, 639
HaeIII	GGCC	6 cut(s)	366, 426, 508, 518, 799, 857
HapII	CCGG	3 cut(s)	384, 445, 505
HgaI	GACGC	2 cut(s)	430, 488
HhaI	GCGC	3 cut(s)	484, 643, 719
Hin1I	GRCGYC	1 cut(s)	281
Hin6I	GCGC	3 cut(s)	482, 641, 717
HinP1I	GCGC	3 cut(s)	482, 641, 717
HinfI	GANTC	2 cut(s)	17, 754
HpaII	CCGG	3 cut(s)	384, 445, 505
HphI	GGTGA	2 cut(s)	763, 793
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	5 cut(s)	210, 497, 621, 690, 759
Hpy188III	TCNNGA	3 cut(s)	300, 535, 673
Hpy8I	GTNNAC	1 cut(s)	381
Hpy99I	CGWCG	2 cut(s)	524, 560
HpyAV	CCTTC	2 cut(s)	190, 385
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	2 cut(s)	13, 281
HpyCH4V	TGCA	4 cut(s)	11, 230, 414, 778
HpyF10VI	GCNNNNNNNGC	6 cut(s)	411, 461, 490, 548, 568, 649
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	2 cut(s)	13, 281
Hsp92I	GRCGYC	1 cut(s)	281
HspAI	GCGC	3 cut(s)	482, 641, 717
LmnI	GCTCC	2 cut(s)	691, 745
Lsp1109I	GCAGC	2 cut(s)	280, 560
MaeI	CTAG	2 cut(s)	510, 851
MaeII	ACGT	2 cut(s)	13, 281
MaeIII	GTNAC	1 cut(s)	18
MboII	GAAGA	8 cut(s)	41, 136, 139, 142, 145, 246, 321, 606
MfeI	CAATTG	1 cut(s)	827
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	3 cut(s)	594, 769, 827
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	644
MseI	TTAA	2 cut(s)	24, 809
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	3 cut(s)	384, 445, 505
MspR9I	CCNGG	1 cut(s)	430
MunI	CAATTG	1 cut(s)	827
MvaI	CCWGG	1 cut(s)	430
MvnI	CGCG	4 cut(s)	441, 482, 641, 659
MwoI	GCNNNNNNNGC	6 cut(s)	411, 461, 490, 548, 568, 649
NlaIV	GGNNCC	4 cut(s)	427, 434, 584, 687
NmuCI	GTSAC	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	360
PaqCI	CACCTGC	1 cut(s)	769
PasI	CCCWGGG	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	2 cut(s)	561, 656
PfeI	GAWTC	1 cut(s)	754
PkrI	GCNGC	4 cut(s)	295, 454, 550, 640
PleI	GAGTC	1 cut(s)	25
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	428
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	4 cut(s)	427, 434, 584, 687
PspPI	GGNCC	4 cut(s)	378, 394, 425, 433
PspXI	VCTCGAGB	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	780
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	2 cut(s)	24, 809
SatI	GCNGC	4 cut(s)	294, 453, 549, 639
Sau96I	GGNCC	4 cut(s)	378, 394, 425, 433
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	564
SfcI	CTRYAG	1 cut(s)	776
Sfr274I	CTCGAG	1 cut(s)	360
SinI	GGWCC	3 cut(s)	378, 394, 433
SlaI	CTCGAG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	3 cut(s)	594, 769, 827
SsiI	CCGC	9 cut(s)	202, 271, 291, 339, 397, 417, 453, 639, 743
SspMI	CTAG	2 cut(s)	510, 851
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	2 cut(s)	16, 284
TaqI	TCGA	9 cut(s)	222, 301, 361, 522, 555, 564, 674, 767, 840
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	3 cut(s)	594, 769, 827
TauI	GCSGC	2 cut(s)	455, 641
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	2 cut(s)	24, 809
Tru9I	TTAA	2 cut(s)	24, 809
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	2 cut(s)	293, 548
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	42, 57
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	1 cut(s)	630
VpaK11BI	GGWCC	3 cut(s)	378, 394, 433
XapI	RAATTY	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XhoI	CTCGAG	1 cut(s)	360
XspI	CTAG	2 cut(s)	510, 851
ZraI	GACGTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.