Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004972.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

20111 .. 22140

Gene Structure 2030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004972.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgtgtcctggagatgcaacaaatcaagattctccacccactagtggagctgaaggggataaaacagaacaagacgaagatggtctaataacgttggggttctatgttagctcagtgcttggattcatcataggattctggggattctgtgcccctttgttgcttaaggtttcttggagaattgcctacttccagtacttgaatgatattaaaatttggaactgccatcgaaatcgtgagtctagaggccacattctaagggccaccggccggaaggaccgcaacaacaaggtctacaccgccaaaggccccagggaccacagcgtttggctcgccgcccacaccgccattcaattctacgacatgcaagaccggctcggatacgaccggcccatcatggccgtcgattggatcatcaagaaagccaaggccgcaatcgatgagctgccgctgtggaacctgaactcaatttctgttcagagaacatcttctccgacggtgccgatatccgccgcgcaggacatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

175

Amino Acids

19.75

Weight (kDa)

7.73

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	515
AciI	CCGC	8 cut(s)	280, 300, 336, 345, 432, 449, 510, 513
AclI	AACGTT	1 cut(s)	92
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	2 cut(s)	268, 399
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	44, 270, 408
AflII	CTTAAG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	202, 353
AhlI	ACTAGT	1 cut(s)	41
AjnI	CCWGG	2 cut(s)	7, 311
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	3 cut(s)	50, 111, 445
AluI	AGCT	3 cut(s)	50, 111, 445
AlwI	GGATC	1 cut(s)	419
AoxI	GGCC	7 cut(s)	247, 261, 268, 307, 389, 399, 429
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	487
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	5 cut(s)	261, 277, 308, 316, 390
AvaII	GGWCC	2 cut(s)	277, 316
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	3 cut(s)	74, 234, 401
BceAI	ACGGC	1 cut(s)	386
BciT130I	CCWGG	2 cut(s)	9, 313
BciVI	GTATCC	1 cut(s)	374
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	2 cut(s)	42, 243
BfrI	CTTAAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	5 cut(s)	336, 432, 446, 449, 513
BlsI	GCNGC	5 cut(s)	337, 433, 447, 450, 514
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	9, 313
Bme18I	GGWCC	2 cut(s)	277, 316
BmgT120I	GGNCC	5 cut(s)	261, 277, 308, 316, 390
BmiI	GGNNCC	4 cut(s)	310, 317, 458, 501
BmrFI	CCNGG	2 cut(s)	9, 313
BmsI	GCATC	1 cut(s)	4
BpmI	CTGGAG	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	311, 312, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 270, 408
Bse118I	RCCGGY	3 cut(s)	266, 372, 387
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	9, 313
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	311, 312, 426
BseLI	CCNNNNNNNGG	3 cut(s)	44, 270, 408
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	193
BseSI	GKGCMC	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	515
Bsh1285I	CGRYCG	2 cut(s)	271, 388
BshFI	GGCC	7 cut(s)	249, 263, 270, 309, 391, 401, 431
BshNI	GGYRCC	1 cut(s)	499
BshVI	ATCGAT	1 cut(s)	438
BsiEI	CGRYCG	2 cut(s)	271, 388
BsiSI	CCGG	4 cut(s)	267, 271, 373, 388
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	44, 270, 408
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	7 cut(s)	249, 263, 270, 309, 391, 401, 431
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	8 cut(s)	280, 300, 336, 345, 432, 449, 510, 513
BspANI	GGCC	7 cut(s)	249, 263, 270, 309, 391, 401, 431
BspCNI	CTCAG	1 cut(s)	125
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	4 cut(s)	310, 317, 458, 501
BspPI	GGATC	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	499
BspTI	CTTAAG	1 cut(s)	164
BsrFI	RCCGGY	3 cut(s)	266, 372, 387
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	3 cut(s)	266, 372, 387
BssECI	CCNNGG	3 cut(s)	311, 312, 426
BssMI	GATC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	9, 313
Bst4CI	ACNGT	1 cut(s)	499
BstAFI	CTTAAG	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	112, 257
BstFNI	CGCG	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	411
BstMCI	CGRYCG	2 cut(s)	271, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 373, 431
BstNI	CCWGG	2 cut(s)	9, 313
BstNSI	RCATGY	2 cut(s)	367, 526
BstSCI	CCNGG	2 cut(s)	7, 311
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	1 cut(s)	432
BstZI	CGGCCG	1 cut(s)	268
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	7 cut(s)	249, 263, 270, 309, 391, 401, 431
BsuTUI	ATCGAT	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	517
Cfr10I	RCCGGY	3 cut(s)	266, 372, 387
Cfr13I	GGNCC	5 cut(s)	261, 277, 308, 316, 390
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	196
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CviAII	CATG	3 cut(s)	364, 397, 523
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	112, 257
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
EaeI	YGGCCR	2 cut(s)	268, 399
EagI	CGGCCG	1 cut(s)	268
EciI	GGCGGA	1 cut(s)	499
EclXI	CGGCCG	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	426
Eco32I	GATATC	1 cut(s)	507
Eco47I	GGWCC	2 cut(s)	277, 316
Eco52I	CGGCCG	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	7, 311
EcoRV	GATATC	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	367, 400, 526
FaiI	YATR	5 cut(s)	105, 131, 365, 398, 524
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	363, 396, 522
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	336, 432, 446, 449, 513
Fsp4HI	GCNGC	5 cut(s)	336, 432, 446, 449, 513
FspBI	CTAG	2 cut(s)	42, 243
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	5 cut(s)	336, 432, 446, 449, 513
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	7 cut(s)	249, 263, 270, 309, 391, 401, 431
HapII	CCGG	4 cut(s)	267, 271, 373, 388
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	3 cut(s)	367, 400, 526
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HinfI	GANTC	5 cut(s)	29, 123, 135, 144, 239
HpaII	CCGG	4 cut(s)	267, 271, 373, 388
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	3 cut(s)	380, 480, 495
Hpy188III	TCNNGA	4 cut(s)	26, 236, 243, 418
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	2 cut(s)	407, 499
HpyAV	CCTTC	2 cut(s)	47, 268
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	17, 367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 373, 431
HpyF3I	CTNAG	2 cut(s)	112, 257
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	3 cut(s)	367, 400, 526
HspAI	GCGC	1 cut(s)	515
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	42, 243
MaeII	ACGT	1 cut(s)	92
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	2 cut(s)	89, 480
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	4 cut(s)	180, 213, 353, 468
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	1 cut(s)	239
MroXI	GAANNNNTTC	1 cut(s)	487
MseI	TTAA	2 cut(s)	165, 210
MspA1I	CMGCKG	1 cut(s)	451
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	4 cut(s)	267, 271, 373, 388
MspR9I	CCNGG	2 cut(s)	9, 313
MvaI	CCWGG	2 cut(s)	9, 313
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	344, 373, 431
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	3 cut(s)	367, 400, 526
NlaIV	GGNNCC	4 cut(s)	310, 317, 458, 501
NspI	RCATGY	2 cut(s)	367, 526
PasI	CCCWGGG	1 cut(s)	312
PciI	ACATGT	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	487
PfeI	GAWTC	4 cut(s)	29, 123, 135, 144
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	5 cut(s)	337, 433, 447, 450, 514
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PscI	ACATGT	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	92
Psp6I	CCWGG	2 cut(s)	7, 311
PspGI	CCWGG	2 cut(s)	7, 311
PspN4I	GGNNCC	4 cut(s)	310, 317, 458, 501
PspPI	GGNCC	5 cut(s)	261, 277, 308, 316, 390
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	165, 210
SatI	GCNGC	5 cut(s)	336, 432, 446, 449, 513
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	5 cut(s)	261, 277, 308, 316, 390
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	9, 313
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	52, 95, 113, 171, 294, 447, 462
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	2 cut(s)	277, 316
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	4 cut(s)	180, 213, 353, 468
SsiI	CCGC	8 cut(s)	280, 300, 336, 345, 432, 449, 510, 513
SspMI	CTAG	2 cut(s)	42, 243
StyD4I	CCNGG	2 cut(s)	7, 311
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	229, 405, 438
TasI	AATT	4 cut(s)	180, 213, 353, 468
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	4 cut(s)	338, 434, 451, 515
TfiI	GAWTC	4 cut(s)	29, 123, 135, 144
Tru1I	TTAA	2 cut(s)	165, 210
Tru9I	TTAA	2 cut(s)	165, 210
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	277, 316
XapI	RAATTY	1 cut(s)	213
XbaI	TCTAGA	1 cut(s)	242
XceI	RCATGY	2 cut(s)	367, 526
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	487
XspI	CTAG	2 cut(s)	42, 243
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.