Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

38212926 .. 38217006

Gene Structure 4081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0314600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGACTGTTCCGTTTCTGAGGGAGGCCTTCAAGCCGCCATCGCCAAGAAACTCAAACAAAATCAGGCCCGTGATCCTGGGAGCTCGTCTAGTTTAGCAGGGTCAGTAGATGGTTTTGAGCCCCTCAAGAGTTCAGGATCAATCAATTCAAATGCTCTCAAAAGTTCCAATGATTCGTCATGTATTGATGACGATGAAATGAAGATTGAAGATGATTGCGATGATGATGACGATGAATATGATTTTGATGACAATGATGTATATCTGTCTGATGATGATTATTTGACTATGGAATCTCAATTTGACAATGTGGATTTGCCTCCTGGGGTGGAAGCTTCACTTCCCTGGTTGAAGGATCCTTCTCCAAGTGAAAACACATCGTCCACTAAGAAGTTAACTATTTCAGATGCACCACCTGTAACTGGTCTACCATCTGCAGTCGGTTCGTCATCTGCTTCATGCAGCTCAGCTGTTCCTTCTGAGTCAAGTTCTAGTAAGAACGTACAAAACAGCGATGACGATAGTCTCATGCAAAAGTTTCAACAATTTAAGCAATTTGATGTTGTCGAGGACTTCTCGGATCATCACTATAGCCGAATGGGATTTTCAGATGAGCAGCCACCCAAGAATTGGGCAAAGAGAATTCAGGAAGAGTGGAAAATTTTGGAGAAGGACTTACCTGACACTATATTTGTCCGGGTTTATGAAGCAAGAATGGAACTTCTACGGGCAGTGATTATAGGACCTCCAGGCACTCCGTACCATGATGGTCTTTTTGTCTTTGATTGTCTCTTCCCCACTGACTATCCTAATTCACCACCGATGGTTTACTACTATTCCGGTGGTCTTCGGCTAAATCCAAATTTGTATGATTGTGGGAAAGTTTGTCTCAGTCTTTTAGGCACGTGGAGCGGTAGACAGAGAGAAAACTGGATACCTGGGGAATCAACAATGCTACAAGTTTTGGTCTCTATACAAGCTCTTATACTGAATGCAGACCCCTTTTTCAATGAGCCTGGGTATGAGACAAGGTATACTGGAGTAGAAGGGCAAAAAAAATCCAGGAAGTACAGTGAAGAGGTCTTTATTATGTCTCTGAAGACGATGATGTATACACTAAGGAAGCCACCTAAGTATTTTGAGGACTTTGTCTTGGGTCATTTTCGCAATCGTGCACATAATATTCTGGCAGCATGTAAGGCATATTCTGAGGGTACATTGGTTGGGTCTTCTATTGGAGATGCAGTGCAGAATGGAGTTGAAAGTGGCTCAAGTGAATTTAAGTCATCTGTTGCTAGGATGATGAATATGCTTGTTACATATTTCACCAGAAATGGATCAACAGACTGTGAGCAGTTTCGAGGTGCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

457

Amino Acids

50.67

Weight (kDa)

4.53

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	214 - 340	1.3e-21	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	630
AccBSI	CCGCTC	1 cut(s)	912
AccI	GTMKAC	4 cut(s)	427, 916, 1034, 1112
AciI	CCGC	2 cut(s)	36, 912
AclWI	GGATC	6 cut(s)	68, 145, 350, 363, 588, 1345
AcsI	RAATTY	4 cut(s)	642, 660, 862, 1277
AcuI	CTGAAG	1 cut(s)	1118
AcvI	CACGTG	1 cut(s)	906
AfaI	GTAC	4 cut(s)	504, 761, 1070, 1216
AfiI	CCNNNNNNNGG	2 cut(s)	422, 630
AgsI	TTSAA	7 cut(s)	32, 150, 209, 352, 542, 1009, 1262
AjnI	CCWGG	7 cut(s)	76, 322, 344, 748, 937, 1015, 1061
AluBI	AGCT	5 cut(s)	84, 335, 465, 470, 980
AluI	AGCT	5 cut(s)	84, 335, 465, 470, 980
Alw21I	GWGCWC	2 cut(s)	86, 1177
Alw26I	GTCTC	6 cut(s)	530, 794, 893, 973, 1019, 1098
Alw44I	GTGCAC	1 cut(s)	1173
AlwI	GGATC	6 cut(s)	68, 145, 350, 363, 588, 1345
AoxI	GGCC	2 cut(s)	25, 66
ApaLI	GTGCAC	1 cut(s)	1173
ApeKI	GCWGC	4 cut(s)	462, 616, 1190, 1367
ApoI	RAATTY	4 cut(s)	642, 660, 862, 1277
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
AspS9I	GGNCC	2 cut(s)	67, 743
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	2 cut(s)	807, 1318
AvaII	GGWCC	1 cut(s)	743
BaeGI	GKGCMC	1 cut(s)	1177
BaeI	ACNNNNGTAYC	2 cut(s)	1206, 1239
BamHI	GGATCC	1 cut(s)	355
BanII	GRGCYC	2 cut(s)	86, 123
BbrPI	CACGTG	1 cut(s)	906
BbsI	GAAGAC	3 cut(s)	839, 1106, 1221
Bbv12I	GWGCWC	2 cut(s)	86, 1177
BbvI	GCAGC	3 cut(s)	474, 628, 1202
BccI	CCATC	5 cut(s)	47, 104, 439, 761, 817
BcgI	CGANNNNNNTGC	2 cut(s)	426, 460
BciT130I	CCWGG	7 cut(s)	78, 324, 346, 750, 939, 1017, 1063
BciVI	GTATCC	1 cut(s)	927
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	6 cut(s)	530, 794, 893, 973, 1019, 1098
BfaI	CTAG	3 cut(s)	90, 492, 1296
BfmI	CTRYAG	2 cut(s)	435, 589
BfuI	GTATCC	1 cut(s)	927
BisI	GCNGC	5 cut(s)	36, 463, 617, 1191, 1368
BlpI	GCTNAGC	1 cut(s)	466
BlsI	GCNGC	5 cut(s)	37, 464, 618, 1192, 1369
Bme1390I	CCNGG	8 cut(s)	78, 324, 346, 698, 750, 939, 1017, 1063
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	67, 743
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	8 cut(s)	78, 324, 346, 698, 750, 939, 1017, 1063
BmsI	GCATC	2 cut(s)	397, 1231
BoxI	GACNNNNGTC	1 cut(s)	522
BpiI	GAAGAC	3 cut(s)	839, 1106, 1221
BplI	GAGNNNNNCTC	2 cut(s)	560, 592
BpmI	CTGGAG	2 cut(s)	732, 1059
Bpu1102I	GCTNAGC	1 cut(s)	466
BpuEI	CTTGAG	2 cut(s)	110, 1255
BpuMI	CCSGG	1 cut(s)	698
BsaAI	YACGTR	1 cut(s)	906
BsaBI	GATNNNNATC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	973
BsaJI	CCNNGG	5 cut(s)	77, 323, 344, 938, 1016
BsaWI	WCCGGW	1 cut(s)	839
BsaXI	ACNNNNNCTCC	2 cut(s)	1230, 1260
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 630
Bse1I	ACTGG	3 cut(s)	427, 935, 1042
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	7 cut(s)	78, 324, 346, 750, 939, 1017, 1063
BseDI	CCNNGG	5 cut(s)	77, 323, 344, 938, 1016
BseGI	GGATG	1 cut(s)	1305
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	422, 630
BseMII	CTCAG	5 cut(s)	9, 471, 480, 904, 1200
BseNI	ACTGG	3 cut(s)	427, 935, 1042
BseSI	GKGCMC	1 cut(s)	1177
BseXI	GCAGC	3 cut(s)	474, 628, 1202
BsgI	GTGCAG	1 cut(s)	1268
BshFI	GGCC	2 cut(s)	27, 68
BsiHKAI	GWGCWC	2 cut(s)	86, 1177
BsiSI	CCGG	2 cut(s)	697, 840
BslI	CCNNNNNNNGG	2 cut(s)	422, 630
BsmAI	GTCTC	6 cut(s)	530, 794, 893, 973, 1019, 1098
BsmI	GAATGC	1 cut(s)	997
BsnI	GGCC	2 cut(s)	27, 68
Bso31I	GGTCTC	1 cut(s)	973
Bsp1286I	GDGCHC	3 cut(s)	86, 123, 1177
Bsp143I	GATC	5 cut(s)	73, 137, 355, 580, 1337
Bsp1720I	GCTNAGC	1 cut(s)	466
BspACI	CCGC	2 cut(s)	36, 912
BspANI	GGCC	2 cut(s)	27, 68
BspCNI	CTCAG	5 cut(s)	10, 472, 479, 903, 1201
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	6 cut(s)	68, 145, 350, 363, 588, 1345
BspTNI	GGTCTC	1 cut(s)	973
BsrBI	CCGCTC	1 cut(s)	912
BsrI	ACTGG	3 cut(s)	427, 935, 1042
BssECI	CCNNGG	5 cut(s)	77, 323, 344, 938, 1016
BssMI	GATC	5 cut(s)	73, 137, 355, 580, 1337
BssNAI	GTATAC	2 cut(s)	1035, 1113
Bst1107I	GTATAC	2 cut(s)	1035, 1113
Bst2UI	CCWGG	7 cut(s)	78, 324, 346, 750, 939, 1017, 1063
Bst4CI	ACNGT	3 cut(s)	8, 1073, 1349
Bst6I	CTCTTC	3 cut(s)	645, 797, 1071
BstBAI	YACGTR	1 cut(s)	906
BstDEI	CTNAG	8 cut(s)	18, 387, 466, 480, 890, 1118, 1131, 1209
BstF5I	GGATG	1 cut(s)	1305
BstKTI	GATC	5 cut(s)	76, 140, 358, 583, 1340
BstMAI	GTCTC	6 cut(s)	530, 794, 893, 973, 1019, 1098
BstMBI	GATC	5 cut(s)	73, 137, 355, 580, 1337
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 909, 1199
BstNI	CCWGG	7 cut(s)	78, 324, 346, 750, 939, 1017, 1063
BstNSI	RCATGY	1 cut(s)	1197
BstPAI	GACNNNNGTC	1 cut(s)	522
BstSCI	CCNGG	8 cut(s)	76, 322, 344, 696, 748, 937, 1015, 1061
BstSFI	CTRYAG	2 cut(s)	435, 589
BstSLI	GKGCMC	1 cut(s)	1177
BstV1I	GCAGC	3 cut(s)	474, 628, 1202
BstV2I	GAAGAC	3 cut(s)	839, 1106, 1221
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BstZ17I	GTATAC	2 cut(s)	1035, 1113
BsuI	GTATCC	1 cut(s)	927
BsuRI	GGCC	2 cut(s)	27, 68
BtgZI	GCGATG	3 cut(s)	25, 234, 528
BtsCI	GGATG	1 cut(s)	1305
BtsI	GCAGTG	2 cut(s)	738, 1251
BtsIMutI	CAGTG	4 cut(s)	738, 798, 1078, 1251
Cfr13I	GGNCC	2 cut(s)	67, 743
Csp6I	GTAC	4 cut(s)	503, 760, 1069, 1215
CviAII	CATG	5 cut(s)	180, 459, 529, 764, 1194
CviQI	GTAC	4 cut(s)	503, 760, 1069, 1215
DdeI	CTNAG	8 cut(s)	18, 387, 466, 480, 890, 1118, 1131, 1209
DpnI	GATC	5 cut(s)	75, 139, 357, 582, 1339
DpnII	GATC	5 cut(s)	73, 137, 355, 580, 1337
Eam1104I	CTCTTC	3 cut(s)	645, 797, 1071
EarI	CTCTTC	3 cut(s)	645, 797, 1071
Ecl136II	GAGCTC	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	86, 123
Eco31I	GGTCTC	1 cut(s)	973
Eco47I	GGWCC	1 cut(s)	743
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	1118
Eco72I	CACGTG	1 cut(s)	906
EcoICRI	GAGCTC	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	7 cut(s)	76, 322, 344, 748, 937, 1015, 1061
EcoT38I	GRGCYC	2 cut(s)	86, 123
FaeI	CATG	5 cut(s)	183, 462, 532, 767, 1197
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	5 cut(s)	179, 458, 528, 763, 1193
FblI	GTMKAC	4 cut(s)	427, 916, 1034, 1112
Fnu4HI	GCNGC	5 cut(s)	36, 463, 617, 1191, 1368
FokI	GGATG	1 cut(s)	1312
FriOI	GRGCYC	2 cut(s)	86, 123
Fsp4HI	GCNGC	5 cut(s)	36, 463, 617, 1191, 1368
FspBI	CTAG	3 cut(s)	90, 492, 1296
GluI	GCNGC	5 cut(s)	36, 463, 617, 1191, 1368
GsuI	CTGGAG	2 cut(s)	732, 1059
HaeIII	GGCC	2 cut(s)	27, 68
HapII	CCGG	2 cut(s)	697, 840
Hin1II	CATG	5 cut(s)	183, 462, 532, 767, 1197
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	4 cut(s)	173, 293, 482, 944
HpaI	GTTAAC	1 cut(s)	396
HpaII	CCGG	2 cut(s)	697, 840
HphI	GGTGA	2 cut(s)	807, 1318
Hpy166II	GTNNAC	8 cut(s)	384, 396, 428, 829, 917, 1035, 1113, 1175
Hpy188I	TCNGA	8 cut(s)	19, 271, 406, 481, 580, 610, 1098, 1210
Hpy188III	TCNNGA	3 cut(s)	127, 135, 647
Hpy8I	GTNNAC	8 cut(s)	384, 396, 428, 829, 917, 1035, 1113, 1175
HpyAV	CCTTC	6 cut(s)	38, 346, 369, 486, 664, 1040
HpyCH4III	ACNGT	3 cut(s)	8, 1073, 1349
HpyCH4IV	ACGT	2 cut(s)	501, 905
HpyCH4V	TGCA	9 cut(s)	410, 437, 462, 532, 995, 1175, 1244, 1249, 1367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 909, 1199
HpyF3I	CTNAG	8 cut(s)	18, 387, 466, 480, 890, 1118, 1131, 1209
HpySE526I	ACGT	2 cut(s)	501, 905
Hsp92II	CATG	5 cut(s)	183, 462, 532, 767, 1197
KspAI	GTTAAC	1 cut(s)	396
Kzo9I	GATC	5 cut(s)	73, 137, 355, 580, 1337
LmnI	GCTCC	2 cut(s)	81, 909
Lsp1109I	GCAGC	3 cut(s)	474, 628, 1202
LweI	GCATC	2 cut(s)	397, 1231
MaeI	CTAG	3 cut(s)	90, 492, 1296
MaeII	ACGT	2 cut(s)	501, 905
MaeIII	GTNAC	2 cut(s)	418, 1315
MalI	GATC	5 cut(s)	75, 139, 357, 582, 1339
MbiI	CCGCTC	1 cut(s)	912
MboI	GATC	5 cut(s)	73, 137, 355, 580, 1337
MboII	GAAGA	8 cut(s)	214, 221, 662, 784, 839, 1088, 1111, 1221
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	3 cut(s)	86, 123, 1177
MlyI	GAGTC	1 cut(s)	491
MseI	TTAA	3 cut(s)	395, 549, 1281
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	2 cut(s)	697, 840
MspR9I	CCNGG	8 cut(s)	78, 324, 346, 698, 750, 939, 1017, 1063
Mva1269I	GAATGC	1 cut(s)	997
MvaI	CCWGG	7 cut(s)	78, 324, 346, 750, 939, 1017, 1063
MwoI	GCNNNNNNNGC	3 cut(s)	41, 909, 1199
NciI	CCSGG	1 cut(s)	698
NdeII	GATC	5 cut(s)	73, 137, 355, 580, 1337
NlaIII	CATG	5 cut(s)	183, 462, 532, 767, 1197
NlaIV	GGNNCC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	1197
PceI	AGGCCT	1 cut(s)	27
PctI	GAATGC	1 cut(s)	997
PfeI	GAWTC	3 cut(s)	173, 293, 944
PflFI	GACNNNGTC	1 cut(s)	1148
PflMI	CCANNNNNTGG	1 cut(s)	630
PfoI	TCCNGGA	1 cut(s)	1061
PkrI	GCNGC	5 cut(s)	37, 464, 618, 1192, 1369
PleI	GAGTC	1 cut(s)	490
PmaCI	CACGTG	1 cut(s)	906
PmlI	CACGTG	1 cut(s)	906
PpsI	GAGTC	1 cut(s)	490
Ppu21I	YACGTR	1 cut(s)	906
PpuMI	RGGWCCY	1 cut(s)	743
PshAI	GACNNNNGTC	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	743
Psp6I	CCWGG	7 cut(s)	76, 322, 344, 748, 937, 1015, 1061
PspCI	CACGTG	1 cut(s)	906
PspGI	CCWGG	7 cut(s)	76, 322, 344, 748, 937, 1015, 1061
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	67, 743
PspPPI	RGGWCCY	1 cut(s)	743
PstI	CTGCAG	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	1148
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	4 cut(s)	504, 761, 1070, 1216
RsaNI	GTAC	4 cut(s)	503, 760, 1069, 1215
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	395, 549, 1281
SatI	GCNGC	5 cut(s)	36, 463, 617, 1191, 1368
Sau3AI	GATC	5 cut(s)	73, 137, 355, 580, 1337
Sau96I	GGNCC	2 cut(s)	67, 743
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	8 cut(s)	78, 324, 346, 698, 750, 939, 1017, 1063
SduI	GDGCHC	3 cut(s)	86, 123, 1177
SfaNI	GCATC	2 cut(s)	397, 1231
SfcI	CTRYAG	2 cut(s)	435, 589
SinI	GGWCC	1 cut(s)	743
SmlI	CTYRAG	2 cut(s)	125, 1270
SmoI	CTYRAG	2 cut(s)	125, 1270
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	36, 912
SspI	AATATT	1 cut(s)	1183
SspMI	CTAG	3 cut(s)	90, 492, 1296
SstI	GAGCTC	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	8 cut(s)	76, 322, 344, 696, 748, 937, 1015, 1061
TaaI	ACNGT	3 cut(s)	8, 1073, 1349
TaiI	ACGT	2 cut(s)	504, 908
TaqI	TCGA	2 cut(s)	567, 1360
TatI	WGTACW	1 cut(s)	1068
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	3 cut(s)	173, 293, 944
Tru1I	TTAA	3 cut(s)	395, 549, 1281
Tru9I	TTAA	3 cut(s)	395, 549, 1281
TscAI	CASTG	4 cut(s)	738, 805, 1078, 1251
TseI	GCWGC	4 cut(s)	462, 616, 1190, 1367
TspDTI	ATGAA	6 cut(s)	210, 215, 249, 447, 720, 1319
TspGWI	ACGGA	1 cut(s)	747
TspRI	CASTG	4 cut(s)	738, 805, 1078, 1251
Tth111I	GACNNNGTC	1 cut(s)	1148
Van91I	CCANNNNNTGG	1 cut(s)	630
VneI	GTGCAC	1 cut(s)	1173
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	4 cut(s)	642, 660, 862, 1277
XceI	RCATGY	1 cut(s)	1197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627
XmiI	GTMKAC	4 cut(s)	427, 916, 1034, 1112
XspI	CTAG	3 cut(s)	90, 492, 1296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.