Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

25213292 .. 25216288

Gene Structure 2997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31080

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGGGGAGAGCCACAACAACCTCCACCACCGCGCAACGACGTCGTCCTCCGCTGCTTCTCGATTGGGTTTGGGGATAAGGACTGCTTCTTCCTCCACCACCAGCGAGATCGTGGAGGCTCGAGGCCACATTCTAAGGGCCACCGGCCGCAAGGACCGCCACAGCAAGGTGCAGACCGCCAAAGGCCCCAGGGACCGCCGCGTCCGGCTGGCCGCGCACACCGCCATTCAATTCTACGACGTGCAGGACCGGCTAGGATACGACCGGCCCAGCAAGGCCGTCGATTGGCTCATCAGGAAAGCCAAGGCCGCAATAGACGAGCTCGACGAGCTGCCGCCGTGGAATCCGAACTCAATTTCTGTTCAGACGACATCTTCTCCGACGGTGCCCATATCCGTGGCGCAGGACACGCAGAACGCGAGACTCCATTTCTCGATGGTGGAGGCTCCGAGTTCTTTGTCTGCTAATCGGAGAGGCGCAATGGTGGGTAGCAGCGGAGTGGCGGAGCTGGTGAATCAGAACAGCTCGAATTTTCTGCCGCCGTCGATGGACTCGGACTCAATTGCAGATACTATCAAGTCTTTCTTCCCAATGGGTGCGGCGACGGCGGCCGAAACGCAGTCGTTTCACCCCGCCAGCTACCCGCCGGATTTGCTGTCCAGAACCAGCAGCCAGAGCCAAGATCTGCGACTGTCTCTCCACTCTTTCCAAGACCCAATTCTTCTCCACCACCACCACCAAGCTCATCATCATCATCATCAGACCCATCACGAAAATGAGCAAGCTTTTCTTACACCAAACCATCTCGGGTTTGATAGCTCCGCCGCCACGTGGACAGAGCACCACCAGCAACAGCAGCAGCAGCAGCAGGCGGAGCTCAACAGGTTCCAGAGAATGGTGACTTGGAACAATGCGGGTGGTGATAGCAACAACAACAACAACAGCAGCAGCGGTGGTGGAGTTGAGTTTACATTCAACTCGCAACCGCAGACTCAATCGCAGTCGCCGACTCTGCAGCCGTTCTTGTTCGGCCAAAACCAGTTCTTTTCTTCACAGAGGGGACCCCTTCAGTCCAGTAACACGCCTTCGGTTCATGCCTGGATCGACCACAACGACCTTTCGGACCATCAACATCAGATGGCGCCGTCAATCCATAGCCACCATCATCATCATCATCAACAGTCTTCCATTTCCAGCATGGGATTCGCCTCCGGCGGATTCTCCGGCTTCCACATTCCGGCACGAATCCAGGGCGAGGAGGAGCACGACGGCATCTCAGACAAGCCGTCCTCTGCTTCCTCCAATTCTCGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

438

Amino Acids

48.25

Weight (kDa)

6.68

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	49 - 221	1.3e-25	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	44
AccB1I	GGYRCC	2 cut(s)	385, 1141
AccB7I	CCANNNNNTGG	1 cut(s)	895
AccII	CGCG	4 cut(s)	33, 201, 215, 419
AclWI	GGATC	1 cut(s)	1109
AcoI	YGGCCR	4 cut(s)	145, 210, 609, 1030
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	1 cut(s)	1052
AcvI	CACGTG	1 cut(s)	831
AcyI	GRCGYC	2 cut(s)	41, 1142
AfiI	CCNNNNNNNGG	6 cut(s)	166, 285, 831, 895, 1237, 1255
AgsI	TTSAA	2 cut(s)	230, 976
AhdI	GACNNNNNGTC	1 cut(s)	1285
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	188, 1097, 1248
AjuI	GAANNNNNNNTTGG	4 cut(s)	702, 734, 886, 918
AluBI	AGCT	9 cut(s)	322, 331, 508, 525, 639, 743, 785, 819, 877
AluI	AGCT	9 cut(s)	322, 331, 508, 525, 639, 743, 785, 819, 877
Alw21I	GWGCWC	4 cut(s)	324, 843, 879, 1266
Alw26I	GTCTC	2 cut(s)	415, 699
AlwI	GGATC	1 cut(s)	1109
Ama87I	CYCGRG	2 cut(s)	120, 806
ApoI	RAATTY	1 cut(s)	529
AspLEI	GCGC	5 cut(s)	35, 217, 403, 479, 1144
AspS9I	GGNCC	8 cut(s)	138, 154, 185, 193, 247, 267, 1061, 1123
AsuHPI	GGTGA	4 cut(s)	523, 620, 910, 932
AvaI	CYCGRG	2 cut(s)	120, 806
AvaII	GGWCC	5 cut(s)	154, 193, 247, 1061, 1123
BaeGI	GKGCMC	1 cut(s)	390
BanI	GGYRCC	2 cut(s)	385, 1141
BanII	GRGCYC	2 cut(s)	324, 879
BarI	GAAGNNNNNNTAC	2 cut(s)	1069, 1101
BbrPI	CACGTG	1 cut(s)	831
BbsI	GAAGAC	1 cut(s)	1176
Bbv12I	GWGCWC	4 cut(s)	324, 843, 879, 1266
BccI	CCATC	7 cut(s)	430, 541, 774, 810, 1132, 1134, 1170
BceAI	ACGGC	8 cut(s)	263, 322, 526, 621, 1003, 1129, 1270, 1285
BcgI	CGANNNNNNTGC	8 cut(s)	24, 58, 262, 296, 517, 551, 1186, 1220
BciT130I	CCWGG	3 cut(s)	190, 1099, 1250
BciVI	GTATCC	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	415, 699
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	1013
BfoI	RGCGCY	1 cut(s)	1145
BfuI	GTATCC	1 cut(s)	251
BglII	AGATCT	1 cut(s)	682
Bme1390I	CCNGG	3 cut(s)	190, 1099, 1250
Bme18I	GGWCC	5 cut(s)	154, 193, 247, 1061, 1123
BmeRI	GACNNNNNGTC	1 cut(s)	1285
BmeT110I	CYCGRG	2 cut(s)	120, 806
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	8 cut(s)	138, 154, 185, 193, 247, 267, 1061, 1123
BmiI	GGNNCC	8 cut(s)	187, 194, 387, 447, 887, 1062, 1063, 1143
BmrFI	CCNGG	3 cut(s)	190, 1099, 1250
BmsI	GCATC	1 cut(s)	1281
BpiI	GAAGAC	1 cut(s)	1176
BsaAI	YACGTR	1 cut(s)	831
BsaHI	GRCGYC	2 cut(s)	41, 1142
BsaJI	CCNNGG	6 cut(s)	188, 189, 303, 338, 396, 1249
BsaXI	ACNNNNNCTCC	4 cut(s)	361, 391, 681, 711
Bsc4I	CCNNNNNNNGG	6 cut(s)	166, 285, 831, 895, 1237, 1255
Bse118I	RCCGGY	3 cut(s)	143, 249, 264
Bse1I	ACTGG	2 cut(s)	1039, 1074
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	3 cut(s)	190, 1099, 1250
BseDI	CCNNGG	6 cut(s)	188, 189, 303, 338, 396, 1249
BseLI	CCNNNNNNNGG	6 cut(s)	166, 285, 831, 895, 1237, 1255
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	1290
BseNI	ACTGG	2 cut(s)	1039, 1074
BseRI	GAGGAG	2 cut(s)	1271, 1274
BseSI	GKGCMC	1 cut(s)	390
BseX3I	CGGCCG	2 cut(s)	145, 609
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	2 cut(s)	191, 263
Bsh1236I	CGCG	4 cut(s)	33, 201, 215, 419
Bsh1285I	CGRYCG	3 cut(s)	148, 265, 612
BshNI	GGYRCC	2 cut(s)	385, 1141
BsiEI	CGRYCG	3 cut(s)	148, 265, 612
BsiHKAI	GWGCWC	4 cut(s)	324, 843, 879, 1266
BsiHKCI	CYCGRG	2 cut(s)	120, 806
BsiSI	CCGG	8 cut(s)	144, 205, 250, 265, 647, 1212, 1224, 1238
BslFI	GGGAC	2 cut(s)	206, 1074
BslI	CCNNNNNNNGG	6 cut(s)	166, 285, 831, 895, 1237, 1255
BsmAI	GTCTC	2 cut(s)	415, 699
BsmFI	GGGAC	2 cut(s)	206, 1074
BsoBI	CYCGRG	2 cut(s)	120, 806
Bsp1286I	GDGCHC	5 cut(s)	324, 390, 843, 879, 1266
Bsp143I	GATC	3 cut(s)	108, 682, 1101
BspCNI	CTCAG	1 cut(s)	1289
BspFNI	CGCG	4 cut(s)	33, 201, 215, 419
BspLI	GGNNCC	8 cut(s)	187, 194, 387, 447, 887, 1062, 1063, 1143
BspMAI	CTGCAG	1 cut(s)	1017
BspPI	GGATC	1 cut(s)	1109
BspT107I	GGYRCC	2 cut(s)	385, 1141
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	3 cut(s)	143, 249, 264
BsrI	ACTGG	2 cut(s)	1039, 1074
BssAI	RCCGGY	3 cut(s)	143, 249, 264
BssECI	CCNNGG	6 cut(s)	188, 189, 303, 338, 396, 1249
BssMI	GATC	3 cut(s)	108, 682, 1101
BssNI	GRCGYC	2 cut(s)	41, 1142
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	3 cut(s)	190, 1099, 1250
Bst4CI	ACNGT	3 cut(s)	385, 693, 1182
BstACI	GRCGYC	2 cut(s)	41, 1142
BstBAI	YACGTR	1 cut(s)	831
BstC8I	GCNNGC	4 cut(s)	210, 637, 783, 870
BstDEI	CTNAG	2 cut(s)	134, 1276
BstDSI	CCRYGG	2 cut(s)	338, 396
BstFNI	CGCG	4 cut(s)	33, 201, 215, 419
BstH2I	RGCGCY	1 cut(s)	1145
BstHHI	GCGC	5 cut(s)	35, 217, 403, 479, 1144
BstKTI	GATC	3 cut(s)	111, 685, 1104
BstMAI	GTCTC	2 cut(s)	415, 699
BstMBI	GATC	3 cut(s)	108, 682, 1101
BstMCI	CGRYCG	3 cut(s)	148, 265, 612
BstNI	CCWGG	3 cut(s)	190, 1099, 1250
BstSCI	CCNGG	3 cut(s)	188, 1097, 1248
BstSFI	CTRYAG	1 cut(s)	1013
BstSLI	GKGCMC	1 cut(s)	390
BstUI	CGCG	4 cut(s)	33, 201, 215, 419
BstV2I	GAAGAC	1 cut(s)	1176
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	682
BstZI	CGGCCG	2 cut(s)	145, 609
BsuI	GTATCC	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	338, 396
BtrI	CACGTC	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	210, 637, 783, 870
CfoI	GCGC	5 cut(s)	35, 217, 403, 479, 1144
Cfr10I	RCCGGY	3 cut(s)	143, 249, 264
Cfr13I	GGNCC	8 cut(s)	138, 154, 185, 193, 247, 267, 1061, 1123
CseI	GACGC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	2 cut(s)	1094, 1198
DdeI	CTNAG	2 cut(s)	134, 1276
DinI	GGCGCC	1 cut(s)	1143
DpnI	GATC	3 cut(s)	110, 684, 1103
DpnII	GATC	3 cut(s)	108, 682, 1101
DrdI	GACNNNNNNGTC	1 cut(s)	200
DriI	GACNNNNNGTC	1 cut(s)	1285
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	4 cut(s)	145, 210, 609, 1030
EagI	CGGCCG	2 cut(s)	145, 609
Eam1105I	GACNNNNNGTC	1 cut(s)	1285
EciI	GGCGGA	4 cut(s)	518, 811, 887, 1230
Ecl136II	GAGCTC	2 cut(s)	322, 877
EclXI	CGGCCG	2 cut(s)	145, 609
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	324, 879
Eco47I	GGWCC	5 cut(s)	154, 193, 247, 1061, 1123
Eco52I	CGGCCG	2 cut(s)	145, 609
Eco53kI	GAGCTC	2 cut(s)	322, 877
Eco57I	CTGAAG	1 cut(s)	1052
Eco72I	CACGTG	1 cut(s)	831
Eco88I	CYCGRG	2 cut(s)	120, 806
EcoICRI	GAGCTC	2 cut(s)	322, 877
EcoO109I	RGGNCCY	2 cut(s)	185, 1061
EcoRII	CCWGG	3 cut(s)	188, 1097, 1248
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	324, 879
EgeI	GGCGCC	1 cut(s)	1143
EheI	GGCGCC	1 cut(s)	1143
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	1097, 1201
FaiI	YATR	4 cut(s)	392, 1095, 1155, 1199
FalI	AAGNNNNNCTT	6 cut(s)	70, 102, 569, 601, 774, 806
FaqI	GGGAC	2 cut(s)	206, 1074
FatI	CATG	2 cut(s)	1093, 1197
FauI	CCCGC	3 cut(s)	640, 651, 907
FriOI	GRGCYC	2 cut(s)	324, 879
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	5 cut(s)	34, 216, 402, 478, 1143
GsaI	CCCAGC	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	1145
HapII	CCGG	8 cut(s)	144, 205, 250, 265, 647, 1212, 1224, 1238
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	5 cut(s)	35, 217, 403, 479, 1144
Hin1I	GRCGYC	2 cut(s)	41, 1142
Hin1II	CATG	2 cut(s)	1097, 1201
Hin6I	GCGC	5 cut(s)	33, 215, 401, 477, 1142
HinP1I	GCGC	5 cut(s)	33, 215, 401, 477, 1142
HindIII	AAGCTT	1 cut(s)	783
HpaII	CCGG	8 cut(s)	144, 205, 250, 265, 647, 1212, 1224, 1238
HphI	GGTGA	4 cut(s)	523, 620, 910, 932
Hpy166II	GTNNAC	2 cut(s)	834, 969
Hpy188III	TCNNGA	6 cut(s)	60, 295, 433, 660, 770, 889
Hpy8I	GTNNAC	2 cut(s)	834, 969
Hpy99I	CGWCG	9 cut(s)	43, 46, 242, 284, 329, 385, 547, 607, 1271
HpyAV	CCTTC	2 cut(s)	1076, 1095
HpyCH4III	ACNGT	3 cut(s)	385, 693, 1182
HpyCH4IV	ACGT	3 cut(s)	41, 240, 830
HpyCH4V	TGCA	4 cut(s)	172, 244, 566, 1015
HpyF3I	CTNAG	2 cut(s)	134, 1276
HpySE526I	ACGT	3 cut(s)	41, 240, 830
Hsp92I	GRCGYC	2 cut(s)	41, 1142
Hsp92II	CATG	2 cut(s)	1097, 1201
HspAI	GCGC	5 cut(s)	33, 215, 401, 477, 1142
KasI	GGCGCC	1 cut(s)	1141
KflI	GGGWCCC	1 cut(s)	1061
Kzo9I	GATC	3 cut(s)	108, 682, 1101
LmnI	GCTCC	5 cut(s)	451, 505, 824, 874, 1261
LweI	GCATC	1 cut(s)	1281
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	3 cut(s)	41, 240, 830
MaeIII	GTNAC	2 cut(s)	898, 1076
MalI	GATC	3 cut(s)	110, 684, 1103
MboI	GATC	3 cut(s)	108, 682, 1101
MboII	GAAGA	6 cut(s)	81, 366, 577, 713, 1041, 1176
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	5 cut(s)	324, 390, 843, 879, 1266
MluCI	AATT	6 cut(s)	230, 354, 529, 561, 717, 1303
Mly113I	GGCGCC	1 cut(s)	1142
MlyI	GAGTC	5 cut(s)	417, 545, 551, 985, 1003
MmeI	TCCRAC	1 cut(s)	404
MslI	CAYNNNNRTG	2 cut(s)	395, 774
MspA1I	CMGCKG	3 cut(s)	53, 495, 951
MspI	CCGG	8 cut(s)	144, 205, 250, 265, 647, 1212, 1224, 1238
MspR9I	CCNGG	3 cut(s)	190, 1099, 1250
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	3 cut(s)	190, 1099, 1250
MvnI	CGCG	4 cut(s)	33, 201, 215, 419
NarI	GGCGCC	1 cut(s)	1142
NdeII	GATC	3 cut(s)	108, 682, 1101
NlaIII	CATG	2 cut(s)	1097, 1201
NlaIV	GGNNCC	8 cut(s)	187, 194, 387, 447, 887, 1062, 1063, 1143
NmuCI	GTSAC	1 cut(s)	898
PaeR7I	CTCGAG	1 cut(s)	120
PasI	CCCWGGG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	4 cut(s)	324, 416, 1004, 1110
PfeI	GAWTC	5 cut(s)	343, 514, 1203, 1218, 1245
PflFI	GACNNNGTC	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	895
PleI	GAGTC	5 cut(s)	417, 545, 551, 985, 1003
PluTI	GGCGCC	1 cut(s)	1145
PmaCI	CACGTG	1 cut(s)	831
PmlI	CACGTG	1 cut(s)	831
PpsI	GAGTC	5 cut(s)	417, 545, 551, 985, 1003
Ppu21I	YACGTR	1 cut(s)	831
PpuMI	RGGWCCY	1 cut(s)	1061
Psp124BI	GAGCTC	2 cut(s)	324, 879
Psp5II	RGGWCCY	1 cut(s)	1061
Psp6I	CCWGG	3 cut(s)	188, 1097, 1248
PspCI	CACGTG	1 cut(s)	831
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	3 cut(s)	188, 1097, 1248
PspN4I	GGNNCC	8 cut(s)	187, 194, 387, 447, 887, 1062, 1063, 1143
PspPI	GGNCC	8 cut(s)	138, 154, 185, 193, 247, 267, 1061, 1123
PspPPI	RGGWCCY	1 cut(s)	1061
PspXI	VCTCGAGB	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	1017
PsuI	RGATCY	1 cut(s)	682
PsyI	GACNNNGTC	1 cut(s)	43
RseI	CAYNNNNRTG	2 cut(s)	395, 774
SacI	GAGCTC	2 cut(s)	324, 879
Sau3AI	GATC	3 cut(s)	108, 682, 1101
Sau96I	GGNCC	8 cut(s)	138, 154, 185, 193, 247, 267, 1061, 1123
SchI	GAGTC	5 cut(s)	417, 545, 551, 985, 1003
ScrFI	CCNGG	3 cut(s)	190, 1099, 1250
SduI	GDGCHC	5 cut(s)	324, 390, 843, 879, 1266
SfaNI	GCATC	1 cut(s)	1281
SfcI	CTRYAG	1 cut(s)	1013
SfoI	GGCGCC	1 cut(s)	1143
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	5 cut(s)	154, 193, 247, 1061, 1123
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	395, 774
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	6 cut(s)	230, 354, 529, 561, 717, 1303
SspDI	GGCGCC	1 cut(s)	1141
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	2 cut(s)	324, 879
StyD4I	CCNGG	3 cut(s)	188, 1097, 1248
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	385, 693, 1182
TaiI	ACGT	3 cut(s)	44, 243, 833
TaqI	TCGA	8 cut(s)	61, 121, 282, 324, 434, 527, 545, 1104
TasI	AATT	6 cut(s)	230, 354, 529, 561, 717, 1303
TauI	GCSGC	9 cut(s)	150, 201, 215, 311, 337, 541, 602, 611, 827
TfiI	GAWTC	5 cut(s)	343, 514, 1203, 1218, 1245
TseFI	GTSAC	1 cut(s)	898
Tsp45I	GTSAC	1 cut(s)	898
TspDTI	ATGAA	1 cut(s)	1082
TspGWI	ACGGA	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	895
VpaK11BI	GGWCC	5 cut(s)	154, 193, 247, 1061, 1123
XapI	RAATTY	1 cut(s)	529
XcmI	CCANNNNNNNNNTGG	2 cut(s)	109, 1195
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	1 cut(s)	254
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.