Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

11522512 .. 11524709

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0133600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGGCTTAAGCTTTTTCATCCAATGCGCTTGCTTAGTGTCGTTGCTTGTATCCCTTACCCTAGTTCATGCTCAGAGAAGGGTTTTTGATGTGACAAATTACGGTGCTCGTGGAGATGGAAGAACAGATAACAGCAAGGCCTTCATTAGTGCATGGAATGGAGCTTGTCAGAACATTGGAGGAGGTATGGTGCTGTTTCCAAGAGGCACATTTGTGGTGGCTCCGGTGGTTCTTAAAGGTCGATGCAAGGGACCAATGGAGTTTGAAATTCAGGGTACCCTACAGGCTTCTAAGGAGGTCAAAGATTTCATTGATATTGACCATTGGATCACCATACAATACGTTGACGGCTTGAACATTAGTGGTGGTGGAACCCTAGATGGCCTCGGAGCCGATGGTTGGGGATATAATGACTGCCTAAAAAACCCAGGCCGTTGCAAGCAACTCCCTGCTACACTGCGGTTGGATTTTGTCACCAAAGGTTACATAAGCAACATAACATCGATCAACAGCAAAAACACCCACATCAATCTTTTTGCATGCAAGGACGTACTTATTCGCAACGTCAAGATATCAGCTCCCGATGAGAGTCCCAACACCGATGGAATCCACATTGGCACCTCACAGAACATCTATATCGTAGACTCGCAGATATCCACCGGTGACGATTGTGTCTCCGTCCTCCCCGGATCACAATACATCAATGTCACCGGTGTCCAGTGCGGTCCAGGCCATGGAATTAGCATTGGAAGTCTCGGCAGAGGTGATGGTGACTCCGTTAATGACATGTATGTATCTAACTGCAGATTTGAGAGTACTCAAAATGGTGTGAGAATCAAAACATGGGCTGTGGATTCTAAACCTGGAACTGTATCACGTGTTGCCTTTGAGAACATTGAAATGGATAATGTGGAGAATCCCATCATTATTGATCAAGAATATTGCCCTGGTGGTGGTTGTAATACACAGTCATCCTCCGAAGTTCAGATTAGTGATGTAAAGTTTAATGGCATTAGAGGCACTTCCGCTACAAAGGAAGCAATTATTCTCAAATGCAGCCGAAGTAAACCTTGCCAAAATATCGAGCTGAAGGACATTGACCTAACCTTCCGAGGACCTGGAGGACCGGCGGTTTCATTGTGCAATAATGTAGAAGGCAGAGCTTACGGCCTACAAAAGCCCACATCTAAATTGGATACACCGCGAGTAGCTGCTTACAATGAAATAGAGTATGATAACTTAGAAGGCAGAGCTTATGGTCTACAGAACCCCTCCTGGAATCTAAACACGGTGCAGGTATCCCCTGACGGCGAAATAGAGGATCCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

443

Amino Acids

47.78

Weight (kDa)

5.2

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	29 - 77	5.5e-07	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	56 - 385	7.2e-99	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	671
Acc36I	ACCTGC	1 cut(s)	1285
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	2 cut(s)	275, 617
AccB7I	CCANNNNNTGG	1 cut(s)	734
AccI	GTMKAC	2 cut(s)	642, 1261
AccII	CGCG	1 cut(s)	1204
AciI	CCGC	5 cut(s)	460, 723, 1026, 1130, 1202
AclWI	GGATC	4 cut(s)	335, 697, 1316, 1329
AcsI	RAATTY	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	1109
AcvI	CACGTG	1 cut(s)	878
AfaI	GTAC	3 cut(s)	277, 552, 817
AfiI	CCNNNNNNNGG	3 cut(s)	399, 734, 953
AflII	CTTAAG	1 cut(s)	7
AflIII	ACRYGT	2 cut(s)	786, 877
AgeI	ACCGGT	2 cut(s)	659, 710
AgsI	TTSAA	3 cut(s)	266, 355, 899
AjnI	CCWGG	6 cut(s)	427, 727, 862, 946, 1117, 1274
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	7 cut(s)	12, 164, 578, 1087, 1163, 1211, 1253
AluI	AGCT	7 cut(s)	12, 164, 578, 1087, 1163, 1211, 1253
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	679, 758
AlwI	GGATC	4 cut(s)	335, 697, 1316, 1329
AoxI	GGCC	5 cut(s)	138, 382, 430, 730, 1168
ApeKI	GCWGC	2 cut(s)	1056, 1211
ApoI	RAATTY	1 cut(s)	267
AsiGI	ACCGGT	2 cut(s)	659, 710
Asp718I	GGTACC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	4 cut(s)	251, 725, 1115, 1124
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	6 cut(s)	322, 466, 674, 700, 776, 782
AvaII	GGWCC	4 cut(s)	251, 725, 1115, 1124
BamHI	GGATCC	1 cut(s)	1321
BanI	GGYRCC	2 cut(s)	275, 617
BauI	CACGAG	1 cut(s)	108
BbrPI	CACGTG	1 cut(s)	878
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	1068, 1198
BccI	CCATC	6 cut(s)	110, 374, 389, 596, 761, 929
BceAI	ACGGC	4 cut(s)	364, 417, 1183, 1324
BciT130I	CCWGG	6 cut(s)	429, 729, 864, 948, 1119, 1276
BciVI	GTATCC	3 cut(s)	61, 1189, 1309
BclI	TGATCA	1 cut(s)	931
BcnI	CCSGG	1 cut(s)	687
BcoDI	GTCTC	2 cut(s)	679, 758
BfaI	CTAG	2 cut(s)	62, 377
BfmI	CTRYAG	3 cut(s)	281, 802, 1262
BfrI	CTTAAG	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	1285
BfuI	GTATCC	3 cut(s)	61, 1189, 1309
BisI	GCNGC	2 cut(s)	1057, 1212
BlsI	GCNGC	2 cut(s)	1058, 1213
BmcAI	AGTACT	1 cut(s)	817
Bme1390I	CCNGG	7 cut(s)	429, 687, 729, 864, 948, 1119, 1276
Bme18I	GGWCC	4 cut(s)	251, 725, 1115, 1124
BmgT120I	GGNCC	4 cut(s)	251, 725, 1115, 1124
BmiI	GGNNCC	7 cut(s)	222, 252, 277, 373, 391, 619, 1323
BmrFI	CCNGG	7 cut(s)	429, 687, 729, 864, 948, 1119, 1276
BmsI	GCATC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	1140
BpuMI	CCSGG	1 cut(s)	687
Bsa29I	ATCGAT	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	878
BsaJI	CCNNGG	6 cut(s)	385, 427, 685, 733, 946, 1111
BsaWI	WCCGGW	3 cut(s)	223, 659, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	3 cut(s)	399, 734, 953
Bse118I	RCCGGY	3 cut(s)	659, 710, 1126
Bse1I	ACTGG	1 cut(s)	718
BseBI	CCWGG	6 cut(s)	429, 729, 864, 948, 1119, 1276
BseCI	ATCGAT	1 cut(s)	503
BseDI	CCNNGG	6 cut(s)	385, 427, 685, 733, 946, 1111
BseGI	GGATG	2 cut(s)	18, 971
BseLI	CCNNNNNNNGG	3 cut(s)	399, 734, 953
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	718
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	1068, 1198
BsgI	GTGCAG	1 cut(s)	1313
Bsh1236I	CGCG	1 cut(s)	1204
BshFI	GGCC	5 cut(s)	140, 384, 432, 732, 1170
BshNI	GGYRCC	2 cut(s)	275, 617
BshTI	ACCGGT	2 cut(s)	659, 710
BshVI	ATCGAT	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	5 cut(s)	224, 660, 687, 711, 1127
BslFI	GGGAC	2 cut(s)	264, 576
BslI	CCNNNNNNNGG	3 cut(s)	399, 734, 953
BsmAI	GTCTC	2 cut(s)	679, 758
BsmFI	GGGAC	2 cut(s)	264, 576
BsnI	GGCC	5 cut(s)	140, 384, 432, 732, 1170
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	5 cut(s)	327, 504, 689, 931, 1321
Bsp19I	CCATGG	1 cut(s)	733
BspACI	CCGC	5 cut(s)	460, 723, 1026, 1130, 1202
BspANI	GGCC	5 cut(s)	140, 384, 432, 732, 1170
BspCNI	CTCAG	1 cut(s)	85
BspDI	ATCGAT	1 cut(s)	503
BspFNI	CGCG	1 cut(s)	1204
BspLI	GGNNCC	7 cut(s)	222, 252, 277, 373, 391, 619, 1323
BspMAI	CTGCAG	1 cut(s)	806
BspMI	ACCTGC	1 cut(s)	1285
BspPI	GGATC	4 cut(s)	335, 697, 1316, 1329
BspT107I	GGYRCC	2 cut(s)	275, 617
BspTI	CTTAAG	1 cut(s)	7
BsrFI	RCCGGY	3 cut(s)	659, 710, 1126
BsrI	ACTGG	1 cut(s)	718
BssAI	RCCGGY	3 cut(s)	659, 710, 1126
BssECI	CCNNGG	6 cut(s)	385, 427, 685, 733, 946, 1111
BssMI	GATC	5 cut(s)	327, 504, 689, 931, 1321
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	733
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	6 cut(s)	429, 729, 864, 948, 1119, 1276
Bst4CI	ACNGT	4 cut(s)	104, 871, 969, 1291
BstAFI	CTTAAG	1 cut(s)	7
BstBAI	YACGTR	1 cut(s)	878
BstC8I	GCNNGC	3 cut(s)	31, 440, 541
BstDEI	CTNAG	4 cut(s)	34, 72, 291, 1240
BstDSI	CCRYGG	1 cut(s)	733
BstF5I	GGATG	2 cut(s)	18, 971
BstFNI	CGCG	1 cut(s)	1204
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	5 cut(s)	330, 507, 692, 934, 1324
BstMAI	GTCTC	2 cut(s)	679, 758
BstMBI	GATC	5 cut(s)	327, 504, 689, 931, 1321
BstMWI	GCNNNNNNNGC	2 cut(s)	729, 1017
BstNI	CCWGG	6 cut(s)	429, 729, 864, 948, 1119, 1276
BstNSI	RCATGY	2 cut(s)	543, 790
BstSCI	CCNGG	7 cut(s)	427, 685, 727, 862, 946, 1117, 1274
BstSFI	CTRYAG	3 cut(s)	281, 802, 1262
BstUI	CGCG	1 cut(s)	1204
BstV1I	GCAGC	2 cut(s)	1068, 1198
BstX2I	RGATCY	1 cut(s)	1321
BstYI	RGATCY	1 cut(s)	1321
Bsu15I	ATCGAT	1 cut(s)	503
BsuI	GTATCC	3 cut(s)	61, 1189, 1309
BsuRI	GGCC	5 cut(s)	140, 384, 432, 732, 1170
BsuTUI	ATCGAT	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	2 cut(s)	18, 971
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	2 cut(s)	455, 725
BveI	ACCTGC	1 cut(s)	1285
Cac8I	GCNNGC	3 cut(s)	31, 440, 541
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	3 cut(s)	659, 710, 1126
Cfr13I	GGNCC	4 cut(s)	251, 725, 1115, 1124
ClaI	ATCGAT	1 cut(s)	503
Csp6I	GTAC	3 cut(s)	276, 551, 816
CspAI	ACCGGT	2 cut(s)	659, 710
CviAII	CATG	6 cut(s)	68, 153, 540, 734, 787, 843
CviQI	GTAC	3 cut(s)	276, 551, 816
DdeI	CTNAG	4 cut(s)	34, 72, 291, 1240
DpnI	GATC	5 cut(s)	329, 506, 691, 933, 1323
DpnII	GATC	5 cut(s)	327, 504, 689, 931, 1321
DrdI	GACNNNNNNGTC	1 cut(s)	671
DseDI	GACNNNNNNGTC	1 cut(s)	671
Eco130I	CCWWGG	1 cut(s)	733
Eco147I	AGGCCT	1 cut(s)	140
Eco32I	GATATC	2 cut(s)	573, 654
Eco47I	GGWCC	4 cut(s)	251, 725, 1115, 1124
Eco57I	CTGAAG	1 cut(s)	1109
Eco72I	CACGTG	1 cut(s)	878
EcoO109I	RGGNCCY	1 cut(s)	1115
EcoRII	CCWGG	6 cut(s)	427, 727, 862, 946, 1117, 1274
EcoRV	GATATC	2 cut(s)	573, 654
EcoT14I	CCWWGG	1 cut(s)	733
ErhI	CCWWGG	1 cut(s)	733
FaeI	CATG	6 cut(s)	71, 156, 543, 737, 790, 846
FalI	AAGNNNNNCTT	2 cut(s)	1054, 1086
FaqI	GGGAC	2 cut(s)	264, 576
FatI	CATG	6 cut(s)	67, 152, 539, 733, 786, 842
FbaI	TGATCA	1 cut(s)	931
FblI	GTMKAC	2 cut(s)	642, 1261
Fnu4HI	GCNGC	2 cut(s)	1057, 1212
FokI	GGATG	2 cut(s)	5, 958
Fsp4HI	GCNGC	2 cut(s)	1057, 1212
FspBI	CTAG	2 cut(s)	62, 377
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	1057, 1212
GsuI	CTGGAG	1 cut(s)	1140
HaeIII	GGCC	5 cut(s)	140, 384, 432, 732, 1170
HapII	CCGG	5 cut(s)	224, 660, 687, 711, 1127
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	6 cut(s)	71, 156, 543, 737, 790, 846
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	8 cut(s)	589, 606, 644, 773, 834, 854, 916, 1279
HpaII	CCGG	5 cut(s)	224, 660, 687, 711, 1127
HphI	GGTGA	6 cut(s)	322, 466, 674, 700, 776, 782
Hpy166II	GTNNAC	4 cut(s)	346, 643, 1067, 1262
Hpy188I	TCNGA	6 cut(s)	75, 171, 389, 979, 987, 1112
Hpy188III	TCNNGA	3 cut(s)	568, 581, 935
Hpy8I	GTNNAC	4 cut(s)	346, 643, 1067, 1262
HpyAV	CCTTC	6 cut(s)	72, 151, 1084, 1117, 1148, 1238
HpyCH4III	ACNGT	4 cut(s)	104, 871, 969, 1291
HpyCH4IV	ACGT	4 cut(s)	342, 549, 564, 877
HpyCH4V	TGCA	9 cut(s)	152, 246, 438, 539, 543, 804, 1056, 1143, 1294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	729, 1017
HpyF3I	CTNAG	4 cut(s)	34, 72, 291, 1240
HpySE526I	ACGT	4 cut(s)	342, 549, 564, 877
Hsp92II	CATG	6 cut(s)	71, 156, 543, 737, 790, 846
HspAI	GCGC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	5 cut(s)	327, 504, 689, 931, 1321
LmnI	GCTCC	4 cut(s)	161, 226, 389, 583
Lsp1109I	GCAGC	2 cut(s)	1068, 1198
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	2 cut(s)	62, 377
MaeII	ACGT	4 cut(s)	342, 549, 564, 877
MaeIII	GTNAC	6 cut(s)	91, 472, 482, 662, 706, 770
MalI	GATC	5 cut(s)	329, 506, 691, 933, 1323
MboI	GATC	5 cut(s)	327, 504, 689, 931, 1321
MboII	GAAGA	1 cut(s)	132
MflI	RGATCY	1 cut(s)	1321
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	5 cut(s)	97, 267, 738, 1041, 1190
MlyI	GAGTC	3 cut(s)	598, 638, 767
MmeI	TCCRAC	1 cut(s)	444
MseI	TTAA	4 cut(s)	8, 234, 780, 1005
MslI	CAYNNNNRTG	2 cut(s)	212, 899
MspCI	CTTAAG	1 cut(s)	7
MspI	CCGG	5 cut(s)	224, 660, 687, 711, 1127
MspR9I	CCNGG	7 cut(s)	429, 687, 729, 864, 948, 1119, 1276
MvaI	CCWGG	6 cut(s)	429, 729, 864, 948, 1119, 1276
MvnI	CGCG	1 cut(s)	1204
MwoI	GCNNNNNNNGC	2 cut(s)	729, 1017
NciI	CCSGG	1 cut(s)	687
NcoI	CCATGG	1 cut(s)	733
NdeII	GATC	5 cut(s)	327, 504, 689, 931, 1321
NlaIII	CATG	6 cut(s)	71, 156, 543, 737, 790, 846
NlaIV	GGNNCC	7 cut(s)	222, 252, 277, 373, 391, 619, 1323
NmeAIII	GCCGAG	1 cut(s)	735
NmuCI	GTSAC	5 cut(s)	91, 472, 662, 706, 770
NspI	RCATGY	2 cut(s)	543, 790
OliI	CACNNNNGTG	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	543
PceI	AGGCCT	1 cut(s)	140
PciI	ACATGT	1 cut(s)	786
PfeI	GAWTC	5 cut(s)	606, 834, 854, 916, 1279
PflMI	CCANNNNNTGG	1 cut(s)	734
PfoI	TCCNGGA	1 cut(s)	1274
PinAI	ACCGGT	2 cut(s)	659, 710
PkrI	GCNGC	2 cut(s)	1058, 1213
PleI	GAGTC	3 cut(s)	597, 638, 767
PmaCI	CACGTG	1 cut(s)	878
PmlI	CACGTG	1 cut(s)	878
PpsI	GAGTC	3 cut(s)	597, 638, 767
Ppu21I	YACGTR	1 cut(s)	878
PpuMI	RGGWCCY	1 cut(s)	1115
PscI	ACATGT	1 cut(s)	786
Psp5II	RGGWCCY	1 cut(s)	1115
Psp6I	CCWGG	6 cut(s)	427, 727, 862, 946, 1117, 1274
PspCI	CACGTG	1 cut(s)	878
PspGI	CCWGG	6 cut(s)	427, 727, 862, 946, 1117, 1274
PspN4I	GGNNCC	7 cut(s)	222, 252, 277, 373, 391, 619, 1323
PspPI	GGNCC	4 cut(s)	251, 725, 1115, 1124
PspPPI	RGGWCCY	1 cut(s)	1115
PstI	CTGCAG	1 cut(s)	806
PsuI	RGATCY	1 cut(s)	1321
RsaI	GTAC	3 cut(s)	277, 552, 817
RsaNI	GTAC	3 cut(s)	276, 551, 816
RseI	CAYNNNNRTG	2 cut(s)	212, 899
SaqAI	TTAA	4 cut(s)	8, 234, 780, 1005
SatI	GCNGC	2 cut(s)	1057, 1212
Sau3AI	GATC	5 cut(s)	327, 504, 689, 931, 1321
Sau96I	GGNCC	4 cut(s)	251, 725, 1115, 1124
ScaI	AGTACT	1 cut(s)	817
SchI	GAGTC	3 cut(s)	598, 638, 767
ScrFI	CCNGG	7 cut(s)	429, 687, 729, 864, 948, 1119, 1276
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	3 cut(s)	281, 802, 1262
SgrAI	CRCCGGYG	2 cut(s)	659, 710
SinI	GGWCC	4 cut(s)	251, 725, 1115, 1124
SmiMI	CAYNNNNRTG	2 cut(s)	212, 899
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
SphI	GCATGC	1 cut(s)	543
Sse9I	AATT	5 cut(s)	97, 267, 738, 1041, 1190
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	5 cut(s)	460, 723, 1026, 1130, 1202
SspI	AATATT	1 cut(s)	941
SspMI	CTAG	2 cut(s)	62, 377
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	7 cut(s)	427, 685, 727, 862, 946, 1117, 1274
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	4 cut(s)	104, 871, 969, 1291
TaiI	ACGT	4 cut(s)	345, 552, 567, 880
TaqI	TCGA	3 cut(s)	241, 503, 1083
TasI	AATT	5 cut(s)	97, 267, 738, 1041, 1190
TatI	WGTACW	1 cut(s)	815
TfiI	GAWTC	5 cut(s)	606, 834, 854, 916, 1279
Tru1I	TTAA	4 cut(s)	8, 234, 780, 1005
Tru9I	TTAA	4 cut(s)	8, 234, 780, 1005
TscAI	CASTG	2 cut(s)	462, 725
TseFI	GTSAC	5 cut(s)	91, 472, 662, 706, 770
TseI	GCWGC	2 cut(s)	1056, 1211
Tsp45I	GTSAC	5 cut(s)	91, 472, 662, 706, 770
TspDTI	ATGAA	6 cut(s)	7, 56, 133, 298, 1125, 1236
TspGWI	ACGGA	2 cut(s)	667, 766
TspRI	CASTG	2 cut(s)	462, 725
Van91I	CCANNNNNTGG	1 cut(s)	734
Vha464I	CTTAAG	1 cut(s)	7
VpaK11BI	GGWCC	4 cut(s)	251, 725, 1115, 1124
XapI	RAATTY	1 cut(s)	267
XceI	RCATGY	2 cut(s)	543, 790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1189
XmiI	GTMKAC	2 cut(s)	642, 1261
XspI	CTAG	2 cut(s)	62, 377
ZrmI	AGTACT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.