Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004435.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

21879 .. 23012

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004435.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgacccctacttattttttcatatcaacgttgtacctacgaccaatttcggtcagggagccgttaaattttgcacgtgcgatgcactcctccgctgcttctcgattggctttgggtataaggactgcttcttcctccatcgccagcgaaatcgtggaggctcgaggccatattctaagggccaccaaccggaaggaccgccacagcaaggtctacaccgccaaaggccccagggaccaccgcatctggctcgccgcccacaccgctattcaataccggctaggatacgaccggcccagcaaggttgtcgattgggtcatcaaaaaagccaaggccgcaatcgacgagctgccgccgtggaacccgaactcaatttctgttcagacaacatcttctcagacggtgccgatatccgccgcgcaggacacgcagaacgcaagcctccatttctcgatggtggaggctccgagttctttgtctgctaatcgggggtcggaggaaagaacgagagtggtggtggctaagtcgtcggcggcggcggcggggatgaactcggagcgagcggcgaagcctcagtgcaatttcaatttgttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

198

Amino Acids

21.72

Weight (kDa)

10.35

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	403
AccBSI	CCGCTC	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	419
AclI	AACGTT	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	67
AcvI	CACGTG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	189, 208
AgsI	TTSAA	2 cut(s)	272, 586
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	5 cut(s)	166, 180, 226, 293, 333
ApeKI	GCWGC	2 cut(s)	95, 349
ApoI	RAATTY	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	5 cut(s)	180, 196, 227, 235, 294
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	2 cut(s)	196, 235
BanI	GGYRCC	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	82, 336
BccI	CCATC	2 cut(s)	146, 448
BceAI	ACGGC	2 cut(s)	46, 340
BcgI	CGANNNNNNTGC	4 cut(s)	232, 266, 289, 323
BciT130I	CCWGG	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	2 cut(s)	196, 235
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	5 cut(s)	180, 196, 227, 235, 294
BmiI	GGNNCC	6 cut(s)	60, 229, 236, 362, 405, 465
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	72, 252
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	4 cut(s)	230, 231, 330, 356
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 208
Bse118I	RCCGGY	2 cut(s)	276, 291
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	4 cut(s)	230, 231, 330, 356
BseGI	GGATG	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	189, 208
BseMII	CTCAG	2 cut(s)	410, 587
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	82, 336
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	419
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	5 cut(s)	168, 182, 228, 295, 335
BshNI	GGYRCC	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	190, 277, 292
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	189, 208
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	5 cut(s)	168, 182, 228, 295, 335
BsoBI	CYCGRG	1 cut(s)	162
BspANI	GGCC	5 cut(s)	168, 182, 228, 295, 335
BspCNI	CTCAG	2 cut(s)	409, 586
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	6 cut(s)	60, 229, 236, 362, 405, 465
BspT107I	GGYRCC	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	563
BsrFI	RCCGGY	2 cut(s)	276, 291
BssAI	RCCGGY	2 cut(s)	276, 291
BssECI	CCNNGG	4 cut(s)	230, 231, 330, 356
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	403
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	4 cut(s)	145, 252, 439, 561
BstDEI	CTNAG	4 cut(s)	176, 396, 522, 573
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	552
BstFNI	CGCG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	421
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 335, 427, 539
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	82, 336
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	5 cut(s)	168, 182, 228, 295, 335
BtgI	CCRYGG	1 cut(s)	356
BtgZI	GCGATG	2 cut(s)	95, 124
BtsCI	GGATG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	581
Cac8I	GCNNGC	4 cut(s)	145, 252, 439, 561
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	2 cut(s)	276, 291
Cfr13I	GGNCC	5 cut(s)	180, 196, 227, 235, 294
Csp6I	GTAC	1 cut(s)	34
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	4 cut(s)	176, 396, 522, 573
EciI	GGCGGA	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	196, 235
Eco72I	CACGTG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaiI	YATR	3 cut(s)	23, 119, 171
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FaqI	GGGAC	1 cut(s)	248
FauI	CCCGC	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	213
FokI	GGATG	1 cut(s)	559
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	420
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	5 cut(s)	168, 182, 228, 295, 335
HapII	CCGG	3 cut(s)	190, 277, 292
HhaI	GCGC	1 cut(s)	421
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HpaII	CCGG	3 cut(s)	190, 277, 292
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	5 cut(s)	384, 399, 468, 496, 556
Hpy188III	TCNNGA	2 cut(s)	102, 451
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	2 cut(s)	347, 532
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	29, 76
HpyCH4V	TGCA	3 cut(s)	74, 85, 579
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 335, 427, 539
HpyF3I	CTNAG	4 cut(s)	176, 396, 522, 573
HpySE526I	ACGT	2 cut(s)	29, 76
HspAI	GCGC	1 cut(s)	419
LmnI	GCTCC	3 cut(s)	58, 469, 556
Lsp1109I	GCAGC	2 cut(s)	82, 336
LweI	GCATC	2 cut(s)	72, 252
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	2 cut(s)	29, 76
MbiI	CCGCTC	1 cut(s)	563
MboII	GAAGA	2 cut(s)	123, 384
MluCI	AATT	5 cut(s)	45, 67, 372, 580, 586
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	8 cut(s)	100, 145, 151, 158, 452, 454, 490, 582
MseI	TTAA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	3 cut(s)	190, 277, 292
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	4 cut(s)	263, 335, 427, 539
NlaIV	GGNNCC	6 cut(s)	60, 229, 236, 362, 405, 465
PaeR7I	CTCGAG	1 cut(s)	162
PasI	CCCWGGG	1 cut(s)	231
PmaCI	CACGTG	1 cut(s)	77
PmlI	CACGTG	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	77
Psp1406I	AACGTT	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	230
PspCI	CACGTG	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	6 cut(s)	60, 229, 236, 362, 405, 465
PspPI	GGNCC	5 cut(s)	180, 196, 227, 235, 294
PspXI	VCTCGAGB	1 cut(s)	162
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	65
Sau96I	GGNCC	5 cut(s)	180, 196, 227, 235, 294
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	6 cut(s)	32, 39, 79, 213, 306, 351
SfaNI	GCATC	2 cut(s)	72, 252
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	196, 235
SlaI	CTCGAG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	5 cut(s)	45, 67, 372, 580, 586
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	2 cut(s)	32, 79
TaqI	TCGA	5 cut(s)	103, 163, 309, 342, 452
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	5 cut(s)	45, 67, 372, 580, 586
TauI	GCSGC	8 cut(s)	257, 338, 355, 419, 536, 539, 542, 566
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	581
TseI	GCWGC	2 cut(s)	95, 349
TspDTI	ATGAA	2 cut(s)	10, 563
TspRI	CASTG	1 cut(s)	581
VpaK11BI	GGWCC	2 cut(s)	196, 235
XapI	RAATTY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.