Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008081.1

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

18270 .. 20408

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008081.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ctgtctgatcactcaagtccctcccgttcggcgtcaagatcgctaccatgctcgacggccactctctcaaggtaccttccggctgaacgcctcctctcgctcaacaactcggcggctctaatttacgctgacgagtcgttgatcatctcaacaccagcaggttcttcgaccgggataaggactgcttcttcctccaccgctagcgaaatcgtggaggctcgaggccacatactaaaggccaccggccggaagaaccgccacagcaaggtctacaacaagaaaggccccagggaccaccgcgtccggctcgccactcacacaaccattcaattctacgacttgcaagaccggctcagatacgaccggcccagcatggcagtcgattggctcatcaagaaatccaaggccgcaatcgacgagctgtcgtcgtggaacccgaactcaatttctgttcagacaacatcttctctgacggtactgatatccgccacgcaggacaagcagaacgcgaacctccatttctcgatggtggaggcttcgagttctttgtttgctaatcggcgaggagcaatggtgggcagcagcgaagtggcggagttggtgaatcagaacagctccaattttctgcaagtgaggatggtgtggaggccgaagttaatgttaatctttgtctgcctacaattgcctctgatggaagttgggctagaggccgaagttgtcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

241

Amino Acids

26.53

Weight (kDa)

9.61

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	149
Acc65I	GGTACC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	72
AccI	GTMKAC	2 cut(s)	270, 720
AccII	CGCG	2 cut(s)	300, 509
AciI	CCGC	7 cut(s)	113, 198, 256, 298, 408, 486, 593
AcoI	YGGCCR	2 cut(s)	57, 244
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	2 cut(s)	74, 477
AfiI	CCNNNNNNNGG	3 cut(s)	177, 246, 265
AgsI	TTSAA	1 cut(s)	329
AhdI	GACNNNNNGTC	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	421, 615
AluI	AGCT	2 cut(s)	421, 615
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	9 cut(s)	57, 223, 237, 244, 283, 365, 405, 647, 708
ApeKI	GCWGC	2 cut(s)	579, 582
Asp718I	GGTACC	1 cut(s)	72
AspS9I	GGNCC	3 cut(s)	284, 292, 366
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	613
AsuNHI	GCTAGC	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	591, 594
BccI	CCATC	3 cut(s)	520, 631, 685
BceAI	ACGGC	1 cut(s)	72
BcgI	CGANNNNNNTGC	4 cut(s)	147, 181, 361, 395
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	2 cut(s)	7, 141
BcnI	CCSGG	1 cut(s)	172
BfaI	CTAG	3 cut(s)	201, 704, 724
BfuAI	ACCTGC	1 cut(s)	149
BisI	GCNGC	4 cut(s)	114, 408, 580, 583
BlsI	GCNGC	4 cut(s)	115, 409, 581, 584
Bme1390I	CCNGG	2 cut(s)	172, 289
Bme18I	GGWCC	1 cut(s)	292
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	3 cut(s)	284, 292, 366
BmiI	GGNNCC	4 cut(s)	74, 286, 293, 434
BmrFI	CCNGG	2 cut(s)	172, 289
BmtI	GCTAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	287, 288, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 246, 265
Bse118I	RCCGGY	3 cut(s)	242, 348, 363
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	3 cut(s)	287, 288, 402
BseGI	GGATG	1 cut(s)	642
BseLI	CCNNNNNNNGG	3 cut(s)	177, 246, 265
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	367
BseRI	GAGGAG	2 cut(s)	83, 579
BseX3I	CGGCCG	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	591, 594
BseYI	CCCAGC	1 cut(s)	368
Bsh1236I	CGCG	2 cut(s)	300, 509
Bsh1285I	CGRYCG	3 cut(s)	171, 247, 364
BshFI	GGCC	9 cut(s)	59, 225, 239, 246, 285, 367, 407, 649, 710
BshNI	GGYRCC	1 cut(s)	72
BsiEI	CGRYCG	3 cut(s)	171, 247, 364
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	7 cut(s)	80, 171, 243, 247, 304, 349, 364
BslFI	GGGAC	2 cut(s)	3, 305
BslI	CCNNNNNNNGG	3 cut(s)	177, 246, 265
BsmFI	GGGAC	2 cut(s)	3, 305
BsnI	GGCC	9 cut(s)	59, 225, 239, 246, 285, 367, 407, 649, 710
BsoBI	CYCGRG	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	7, 38, 141
BspACI	CCGC	7 cut(s)	113, 198, 256, 298, 408, 486, 593
BspANI	GGCC	9 cut(s)	59, 225, 239, 246, 285, 367, 407, 649, 710
BspCNI	CTCAG	1 cut(s)	366
BspFNI	CGCG	2 cut(s)	300, 509
BspLI	GGNNCC	4 cut(s)	74, 286, 293, 434
BspMI	ACCTGC	1 cut(s)	149
BspOI	GCTAGC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	576
BsrFI	RCCGGY	3 cut(s)	242, 348, 363
BssAI	RCCGGY	3 cut(s)	242, 348, 363
BssECI	CCNNGG	3 cut(s)	287, 288, 402
BssMI	GATC	3 cut(s)	7, 38, 141
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	475
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	202, 309
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	642
BstFNI	CGCG	2 cut(s)	300, 509
BstKTI	GATC	3 cut(s)	10, 41, 144
BstMBI	GATC	3 cut(s)	7, 38, 141
BstMCI	CGRYCG	3 cut(s)	171, 247, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 499
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	170, 287
BstUI	CGCG	2 cut(s)	300, 509
BstV1I	GCAGC	2 cut(s)	591, 594
BstZI	CGGCCG	1 cut(s)	244
BsuRI	GGCC	9 cut(s)	59, 225, 239, 246, 285, 367, 407, 649, 710
BtsCI	GGATG	1 cut(s)	642
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	202, 309
Cfr10I	RCCGGY	3 cut(s)	242, 348, 363
Cfr13I	GGNCC	3 cut(s)	284, 292, 366
CseI	GACGC	2 cut(s)	21, 289
Csp6I	GTAC	2 cut(s)	73, 476
CviAII	CATG	2 cut(s)	48, 373
CviQI	GTAC	2 cut(s)	73, 476
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	3 cut(s)	9, 40, 143
DpnII	GATC	3 cut(s)	7, 38, 141
DrdI	GACNNNNNNGTC	1 cut(s)	299
DriI	GACNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	2 cut(s)	57, 244
EagI	CGGCCG	1 cut(s)	244
Eam1105I	GACNNNNNGTC	1 cut(s)	421
EciI	GGCGGA	2 cut(s)	475, 608
EclXI	CGGCCG	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	292
Eco52I	CGGCCG	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	51, 376
FaiI	YATR	3 cut(s)	49, 230, 374
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FaqI	GGGAC	2 cut(s)	3, 305
FatI	CATG	2 cut(s)	47, 372
FbaI	TGATCA	2 cut(s)	7, 141
FblI	GTMKAC	2 cut(s)	270, 720
Fnu4HI	GCNGC	4 cut(s)	114, 408, 580, 583
FokI	GGATG	1 cut(s)	649
Fsp4HI	GCNGC	4 cut(s)	114, 408, 580, 583
FspBI	CTAG	3 cut(s)	201, 704, 724
GluI	GCNGC	4 cut(s)	114, 408, 580, 583
GsaI	CCCAGC	1 cut(s)	372
HaeIII	GGCC	9 cut(s)	59, 225, 239, 246, 285, 367, 407, 649, 710
HapII	CCGG	7 cut(s)	80, 171, 243, 247, 304, 349, 364
HgaI	GACGC	2 cut(s)	21, 289
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	51, 376
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	2 cut(s)	134, 604
HpaII	CCGG	7 cut(s)	80, 171, 243, 247, 304, 349, 364
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	2 cut(s)	271, 721
Hpy188I	TCNGA	6 cut(s)	7, 356, 456, 471, 609, 690
Hpy188III	TCNNGA	3 cut(s)	36, 394, 523
Hpy8I	GTNNAC	2 cut(s)	271, 721
Hpy99I	CGWCG	3 cut(s)	58, 419, 430
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	2 cut(s)	343, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 499
HpyF3I	CTNAG	1 cut(s)	353
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	51, 376
KpnI	GGTACC	1 cut(s)	76
Ksp22I	TGATCA	2 cut(s)	7, 141
Kzo9I	GATC	3 cut(s)	7, 38, 141
LmnI	GCTCC	2 cut(s)	566, 620
Lsp1109I	GCAGC	2 cut(s)	591, 594
MaeI	CTAG	3 cut(s)	201, 704, 724
MalI	GATC	3 cut(s)	9, 40, 143
MboI	GATC	3 cut(s)	7, 38, 141
MboII	GAAGA	4 cut(s)	156, 180, 262, 456
MfeI	CAATTG	1 cut(s)	680
MluCI	AATT	5 cut(s)	120, 329, 444, 619, 680
MlyI	GAGTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	656, 662
MspI	CCGG	7 cut(s)	80, 171, 243, 247, 304, 349, 364
MspR9I	CCNGG	2 cut(s)	172, 289
MunI	CAATTG	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	2 cut(s)	300, 509
MwoI	GCNNNNNNNGC	2 cut(s)	349, 499
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	3 cut(s)	7, 38, 141
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	51, 376
NlaIV	GGNNCC	4 cut(s)	74, 286, 293, 434
NmeAIII	GCCGAG	1 cut(s)	89
PaeR7I	CTCGAG	1 cut(s)	219
PasI	CCCWGGG	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	604
PkrI	GCNGC	4 cut(s)	115, 409, 581, 584
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	4 cut(s)	74, 286, 293, 434
PspPI	GGNCC	3 cut(s)	284, 292, 366
PspXI	VCTCGAGB	1 cut(s)	219
RsaI	GTAC	2 cut(s)	74, 477
RsaNI	GTAC	2 cut(s)	73, 476
SalI	GTCGAC	1 cut(s)	719
SaqAI	TTAA	2 cut(s)	656, 662
SatI	GCNGC	4 cut(s)	114, 408, 580, 583
Sau3AI	GATC	3 cut(s)	7, 38, 141
Sau96I	GGNCC	3 cut(s)	284, 292, 366
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	172, 289
SetI	ASST	7 cut(s)	74, 78, 163, 270, 423, 516, 617
Sfr274I	CTCGAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	219
SmlI	CTYRAG	3 cut(s)	13, 67, 219
SmoI	CTYRAG	3 cut(s)	13, 67, 219
Sse9I	AATT	5 cut(s)	120, 329, 444, 619, 680
SsiI	CCGC	7 cut(s)	113, 198, 256, 298, 408, 486, 593
SspMI	CTAG	3 cut(s)	201, 704, 724
StyD4I	CCNGG	2 cut(s)	170, 287
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	8 cut(s)	53, 167, 220, 381, 414, 524, 539, 720
TasI	AATT	5 cut(s)	120, 329, 444, 619, 680
TauI	GCSGC	2 cut(s)	116, 410
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	2 cut(s)	656, 662
Tru9I	TTAA	2 cut(s)	656, 662
TseI	GCWGC	2 cut(s)	579, 582
VpaK11BI	GGWCC	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	219
XmiI	GTMKAC	2 cut(s)	270, 720
XspI	CTAG	3 cut(s)	201, 704, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.