Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

4799804 .. 4800981

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGACTTCTCATTCCCAAGGTCTGTATCTGCAACTGTCACAGCTGAGAGATTCAAAGAAGCAAGAGGAGGAAGAAAATGAAGTTCCAAATCAGGCAGGAGATGCTCAAGAACAACAAGACTATGAAGCAAGAGTGGAAGCTAAACAACCAAACATGAACGATGGAAGATATGGAAAGATTGTGAAGGTTCAAGGCGGCCACATTGTGAGATCAACTAAGAAAGACAGGCACACCAAGGTATTGACTACCAAGGGTCCAAGAGACAGGAGGTTCCGGCTTGCAGCTCAAACTGCCATAGAGTTCTATGATGTTCAAGACCGTCTTGGCTATGCCAGACCAAGCATGGCCATTGACTGGCTCATTCAGAAGGCCAAAGCCTCCATTGAAGCTCTCGGGAATTCTTCTACTGTACAGCAGCCTCAGCAACACCAAGGAGGCCCTGCCGTGCCAGAAACTGTGGAAATTCACCAGCATTTTAATGAGAGTGCTATGAACAATGTGAGCAAAGAACCTGTTCTTGGCTTTGCTGAAGAAGTTCTCAATTATGCTACCAATTTGTCAGAGGCCGATTTCATGGAGATGGCTATTTCACAAAGTCTGATGGCTTATAATTACTATACAGGTGCTGGTGGTTACAATGCAGGTGATGATGGAGAATGTAGTTCTTTCAATTCATCATATGTTTCATGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

232

Amino Acids

25.83

Weight (kDa)

5.29

Isoelectric Point (pI)

58.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	72 - 142	3.2e-27	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AarI	CACCTGC	1 cut(s)	632
Acc36I	ACCTGC	1 cut(s)	632
AccB7I	CCANNNNNTGG	1 cut(s)	354
AciI	CCGC	1 cut(s)	195
AcoI	YGGCCR	2 cut(s)	196, 345
AcsI	RAATTY	2 cut(s)	397, 462
AcuI	CTGAAG	1 cut(s)	549
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	354, 518
AgsI	TTSAA	5 cut(s)	54, 191, 314, 386, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	4 cut(s)	43, 140, 284, 389
AluI	AGCT	4 cut(s)	43, 140, 284, 389
Alw26I	GTCTC	1 cut(s)	255
AlwNI	CAGNNNCTG	2 cut(s)	455, 626
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	5 cut(s)	196, 345, 369, 436, 564
ApeKI	GCWGC	2 cut(s)	281, 415
ApoI	RAATTY	2 cut(s)	397, 462
Asp700I	GAANNNNTTC	2 cut(s)	513, 534
AspS9I	GGNCC	2 cut(s)	254, 437
AsuHPI	GGTGA	2 cut(s)	458, 656
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	347
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	293, 427
BccI	CCATC	4 cut(s)	155, 574, 595, 644
BceAI	ACGGC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	632
BisI	GCNGC	3 cut(s)	196, 282, 416
BlsI	GCNGC	3 cut(s)	197, 283, 417
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	254, 437
BmiI	GGNNCC	2 cut(s)	255, 272
BmsI	GCATC	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	90
BsaJI	CCNNGG	4 cut(s)	16, 234, 249, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	354, 518
Bse1I	ACTGG	1 cut(s)	359
BseDI	CCNNGG	4 cut(s)	16, 234, 249, 430
BseLI	CCNNNNNNNGG	2 cut(s)	354, 518
BseMII	CTCAG	2 cut(s)	35, 434
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	293, 427
BshFI	GGCC	5 cut(s)	198, 347, 371, 438, 566
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	354, 518
BsmAI	GTCTC	1 cut(s)	255
BsnI	GGCC	5 cut(s)	198, 347, 371, 438, 566
BsoBI	CYCGRG	1 cut(s)	392
Bsp1407I	TGTACA	1 cut(s)	409
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	5 cut(s)	198, 347, 371, 438, 566
BspCNI	CTCAG	2 cut(s)	36, 433
BspLI	GGNNCC	2 cut(s)	255, 272
BspMI	ACCTGC	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	4 cut(s)	16, 234, 249, 430
BssMI	GATC	1 cut(s)	209
BssT1I	CCWWGG	4 cut(s)	16, 234, 249, 430
Bst4CI	ACNGT	4 cut(s)	36, 320, 409, 457
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	44, 216, 420
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 290, 421
BstV1I	GCAGC	2 cut(s)	293, 427
BsuRI	GGCC	5 cut(s)	198, 347, 371, 438, 566
BveI	ACCTGC	1 cut(s)	632
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	2 cut(s)	455, 626
Cfr13I	GGNCC	2 cut(s)	254, 437
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	4 cut(s)	154, 343, 574, 687
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	3 cut(s)	44, 216, 420
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
DraIII	CACNNNGTG	1 cut(s)	205
EaeI	YGGCCR	2 cut(s)	196, 345
Eco130I	CCWWGG	4 cut(s)	16, 234, 249, 430
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	397
EcoT14I	CCWWGG	4 cut(s)	16, 234, 249, 430
ErhI	CCWWGG	4 cut(s)	16, 234, 249, 430
FaeI	CATG	4 cut(s)	157, 346, 577, 690
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	4 cut(s)	153, 342, 573, 686
FauNDI	CATATG	1 cut(s)	679
Fnu4HI	GCNGC	3 cut(s)	196, 282, 416
Fsp4HI	GCNGC	3 cut(s)	196, 282, 416
GluI	GCNGC	3 cut(s)	196, 282, 416
HaeIII	GGCC	5 cut(s)	198, 347, 371, 438, 566
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	4 cut(s)	157, 346, 577, 690
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	2 cut(s)	458, 656
Hpy188I	TCNGA	3 cut(s)	366, 562, 600
Hpy188III	TCNNGA	3 cut(s)	107, 314, 394
HpyAV	CCTTC	2 cut(s)	178, 361
HpyCH4III	ACNGT	4 cut(s)	36, 320, 409, 457
HpyCH4V	TGCA	3 cut(s)	31, 281, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 290, 421
HpyF3I	CTNAG	3 cut(s)	44, 216, 420
Hsp92II	CATG	4 cut(s)	157, 346, 577, 690
Kzo9I	GATC	1 cut(s)	209
Lsp1109I	GCAGC	2 cut(s)	293, 427
LweI	GCATC	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	36, 632
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	4 cut(s)	83, 177, 393, 542
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	7 cut(s)	397, 462, 541, 553, 610, 670, 691
MluNI	TGGCCA	1 cut(s)	347
MnlI	CCTC	7 cut(s)	58, 61, 261, 388, 428, 429, 556
Mox20I	TGGCCA	1 cut(s)	347
MroXI	GAANNNNTTC	2 cut(s)	513, 534
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	2 cut(s)	477, 578
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	3 cut(s)	101, 290, 421
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	4 cut(s)	157, 346, 577, 690
NlaIV	GGNNCC	2 cut(s)	255, 272
NmuCI	GTSAC	1 cut(s)	36
PaqCI	CACCTGC	1 cut(s)	632
PdmI	GAANNNNTTC	2 cut(s)	513, 534
PfeI	GAWTC	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	354
PkrI	GCNGC	3 cut(s)	197, 283, 417
PsiI	TTATAA	1 cut(s)	609
PspN4I	GGNNCC	2 cut(s)	255, 272
PspPI	GGNCC	2 cut(s)	254, 437
PstNI	CAGNNNCTG	2 cut(s)	455, 626
PvuII	CAGCTG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	2 cut(s)	477, 578
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	3 cut(s)	196, 282, 416
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	2 cut(s)	254, 437
SfaNI	GCATC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	477, 578
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	7 cut(s)	397, 462, 541, 553, 610, 670, 691
SsiI	CCGC	1 cut(s)	195
StyI	CCWWGG	4 cut(s)	16, 234, 249, 430
TaaI	ACNGT	4 cut(s)	36, 320, 409, 457
TasI	AATT	7 cut(s)	397, 462, 541, 553, 610, 670, 691
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	2 cut(s)	281, 415
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	7 cut(s)	93, 138, 170, 506, 562, 663, 675
Van91I	CCANNNNNTGG	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	2 cut(s)	397, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmnI	GAANNNNTTC	2 cut(s)	513, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.